Strain Fitness in Pantoea sp. MT58 around IAI47_20960

Experiment: Ying_OrganicAcid7 rep B; time point 1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI47_20955 and IAI47_20960 are separated by 335 nucleotidesIAI47_20960 and IAI47_20965 are separated by 123 nucleotidesIAI47_20965 and IAI47_20970 are separated by 105 nucleotides IAI47_20955: IAI47_20955 - M48 family metallopeptidase, at 438,353 to 440,212 _20955 IAI47_20960: IAI47_20960 - LysR family transcriptional regulator, at 440,548 to 441,432 _20960 IAI47_20965: IAI47_20965 - glutathione transferase GstA, at 441,556 to 442,161 _20965 IAI47_20970: IAI47_20970 - alpha/beta hydrolase, at 442,267 to 442,977 _20970 Position (kb) 440 441 442Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 439.555 kb on + strand, within IAI47_20955at 439.555 kb on + strand, within IAI47_20955at 439.555 kb on + strand, within IAI47_20955at 439.556 kb on - strand, within IAI47_20955at 439.556 kb on - strand, within IAI47_20955at 439.556 kb on - strand, within IAI47_20955at 439.556 kb on - strand, within IAI47_20955at 439.562 kb on - strand, within IAI47_20955at 439.603 kb on + strand, within IAI47_20955at 439.604 kb on - strand, within IAI47_20955at 439.604 kb on - strand, within IAI47_20955at 439.685 kb on + strand, within IAI47_20955at 439.706 kb on + strand, within IAI47_20955at 439.706 kb on + strand, within IAI47_20955at 439.707 kb on - strand, within IAI47_20955at 439.707 kb on - strand, within IAI47_20955at 439.796 kb on + strand, within IAI47_20955at 439.796 kb on + strand, within IAI47_20955at 439.797 kb on - strand, within IAI47_20955at 439.904 kb on + strand, within IAI47_20955at 439.913 kb on - strand, within IAI47_20955at 439.992 kb on + strand, within IAI47_20955at 439.993 kb on - strand, within IAI47_20955at 440.015 kb on - strand, within IAI47_20955at 440.036 kb on + strandat 440.036 kb on + strandat 440.036 kb on + strandat 440.037 kb on - strandat 440.037 kb on - strandat 440.037 kb on - strandat 440.040 kb on + strandat 440.040 kb on + strandat 440.040 kb on + strandat 440.040 kb on + strandat 440.041 kb on - strandat 440.041 kb on - strandat 440.068 kb on + strandat 440.122 kb on + strandat 440.122 kb on + strandat 440.128 kb on + strandat 440.172 kb on + strandat 440.173 kb on - strandat 440.210 kb on + strandat 440.267 kb on - strandat 440.295 kb on + strandat 440.295 kb on + strandat 440.295 kb on + strandat 440.295 kb on + strandat 440.296 kb on - strandat 440.296 kb on - strandat 440.296 kb on - strandat 440.296 kb on - strandat 440.296 kb on - strandat 440.296 kb on - strandat 440.296 kb on - strandat 440.317 kb on + strandat 440.387 kb on + strandat 440.387 kb on + strandat 440.436 kb on + strandat 440.436 kb on + strandat 440.437 kb on - strandat 440.468 kb on + strandat 440.470 kb on - strandat 440.470 kb on - strandat 440.470 kb on - strandat 440.470 kb on - strandat 440.596 kb on + strandat 440.597 kb on - strandat 440.597 kb on - strandat 440.657 kb on - strand, within IAI47_20960at 440.956 kb on + strand, within IAI47_20960at 440.956 kb on + strand, within IAI47_20960at 440.957 kb on - strand, within IAI47_20960at 440.959 kb on + strand, within IAI47_20960at 440.959 kb on + strand, within IAI47_20960at 440.959 kb on + strand, within IAI47_20960at 440.959 kb on + strand, within IAI47_20960at 440.959 kb on + strand, within IAI47_20960at 441.090 kb on + strand, within IAI47_20960at 441.120 kb on + strand, within IAI47_20960at 441.153 kb on + strand, within IAI47_20960at 441.153 kb on + strand, within IAI47_20960at 441.167 kb on - strand, within IAI47_20960at 441.198 kb on + strand, within IAI47_20960at 441.199 kb on - strand, within IAI47_20960at 441.199 kb on - strand, within IAI47_20960at 441.262 kb on - strand, within IAI47_20960at 441.262 kb on - strand, within IAI47_20960at 441.313 kb on + strand, within IAI47_20960at 441.313 kb on + strand, within IAI47_20960at 441.313 kb on + strand, within IAI47_20960at 441.314 kb on - strand, within IAI47_20960at 441.314 kb on - strand, within IAI47_20960at 441.381 kb on + strandat 441.382 kb on - strandat 441.382 kb on - strandat 441.382 kb on - strandat 441.382 kb on - strandat 441.432 kb on + strandat 441.432 kb on + strandat 441.463 kb on + strandat 441.466 kb on + strandat 441.507 kb on + strandat 441.507 kb on + strandat 441.507 kb on + strandat 441.508 kb on - strandat 441.508 kb on - strandat 441.508 kb on - strandat 441.508 kb on - strandat 441.537 kb on + strandat 441.537 kb on + strandat 441.538 kb on - strandat 441.538 kb on - strandat 441.565 kb on + strandat 441.565 kb on + strandat 441.623 kb on + strand, within IAI47_20965at 441.624 kb on - strand, within IAI47_20965at 441.639 kb on + strand, within IAI47_20965at 441.706 kb on + strand, within IAI47_20965at 441.706 kb on + strand, within IAI47_20965at 441.706 kb on + strand, within IAI47_20965at 441.706 kb on + strand, within IAI47_20965at 441.707 kb on - strand, within IAI47_20965at 441.707 kb on - strand, within IAI47_20965at 441.707 kb on - strand, within IAI47_20965at 441.707 kb on - strand, within IAI47_20965at 441.740 kb on + strand, within IAI47_20965at 441.741 kb on - strand, within IAI47_20965at 441.741 kb on - strand, within IAI47_20965at 441.741 kb on - strand, within IAI47_20965at 441.769 kb on + strand, within IAI47_20965at 441.769 kb on + strand, within IAI47_20965at 441.770 kb on - strand, within IAI47_20965at 441.770 kb on - strand, within IAI47_20965at 441.849 kb on + strand, within IAI47_20965at 441.849 kb on + strand, within IAI47_20965at 441.850 kb on - strand, within IAI47_20965at 441.850 kb on - strand, within IAI47_20965at 441.850 kb on - strand, within IAI47_20965at 441.855 kb on + strand, within IAI47_20965at 441.855 kb on + strand, within IAI47_20965at 441.856 kb on - strand, within IAI47_20965at 441.859 kb on - strand, within IAI47_20965at 441.894 kb on + strand, within IAI47_20965at 441.894 kb on + strand, within IAI47_20965at 441.895 kb on - strand, within IAI47_20965at 441.959 kb on - strand, within IAI47_20965at 441.959 kb on - strand, within IAI47_20965at 441.959 kb on - strand, within IAI47_20965at 441.982 kb on - strand, within IAI47_20965at 442.024 kb on + strand, within IAI47_20965at 442.025 kb on - strand, within IAI47_20965at 442.025 kb on - strand, within IAI47_20965at 442.025 kb on - strand, within IAI47_20965at 442.025 kb on - strand, within IAI47_20965at 442.025 kb on - strand, within IAI47_20965at 442.030 kb on + strand, within IAI47_20965at 442.030 kb on + strand, within IAI47_20965at 442.030 kb on + strand, within IAI47_20965at 442.030 kb on + strand, within IAI47_20965at 442.030 kb on + strand, within IAI47_20965at 442.031 kb on - strand, within IAI47_20965at 442.031 kb on - strand, within IAI47_20965at 442.031 kb on - strand, within IAI47_20965at 442.139 kb on + strandat 442.140 kb on - strandat 442.159 kb on + strandat 442.227 kb on + strandat 442.227 kb on + strandat 442.227 kb on + strandat 442.227 kb on + strandat 442.228 kb on - strandat 442.228 kb on - strandat 442.228 kb on - strandat 442.267 kb on - strandat 442.334 kb on + strandat 442.334 kb on + strandat 442.334 kb on + strandat 442.335 kb on - strandat 442.335 kb on - strandat 442.337 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 1
remove
439,555 + IAI47_20955 0.65 -0.2
439,555 + IAI47_20955 0.65 -0.2
439,555 + IAI47_20955 0.65 +0.8
439,556 - IAI47_20955 0.65 -1.8
439,556 - IAI47_20955 0.65 +0.3
439,556 - IAI47_20955 0.65 +0.1
439,556 - IAI47_20955 0.65 +0.0
439,562 - IAI47_20955 0.65 -0.7
439,603 + IAI47_20955 0.67 -2.0
439,604 - IAI47_20955 0.67 -0.2
439,604 - IAI47_20955 0.67 -0.4
439,685 + IAI47_20955 0.72 -1.6
439,706 + IAI47_20955 0.73 -1.0
439,706 + IAI47_20955 0.73 +0.2
439,707 - IAI47_20955 0.73 -0.5
439,707 - IAI47_20955 0.73 -0.4
439,796 + IAI47_20955 0.78 +0.1
439,796 + IAI47_20955 0.78 +0.1
439,797 - IAI47_20955 0.78 +0.8
439,904 + IAI47_20955 0.83 +1.4
439,913 - IAI47_20955 0.84 +0.5
439,992 + IAI47_20955 0.88 -0.4
439,993 - IAI47_20955 0.88 +0.5
440,015 - IAI47_20955 0.89 -1.0
440,036 + -1.5
440,036 + +1.4
440,036 + -0.8
440,037 - -0.4
440,037 - +0.8
440,037 - -0.8
440,040 + -0.6
440,040 + -0.9
440,040 + +0.5
440,040 + -0.2
440,041 - -0.6
440,041 - -0.1
440,068 + -0.3
440,122 + +2.4
440,122 + -0.9
440,128 + -1.3
440,172 + +0.5
440,173 - +0.8
440,210 + +0.8
440,267 - +0.5
440,295 + +0.3
440,295 + +0.1
440,295 + -1.0
440,295 + +0.1
440,296 - -0.3
440,296 - +0.2
440,296 - -2.2
440,296 - +1.1
440,296 - +1.4
440,296 - -0.2
440,296 - -1.5
440,317 + -0.3
440,387 + -0.1
440,387 + -2.8
440,436 + +0.5
440,436 + +1.0
440,437 - -0.9
440,468 + -1.3
440,470 - +0.1
440,470 - -0.7
440,470 - -0.6
440,470 - +0.8
440,596 + -0.5
440,597 - -2.5
440,597 - -0.8
440,657 - IAI47_20960 0.12 +0.6
440,956 + IAI47_20960 0.46 -1.0
440,956 + IAI47_20960 0.46 -0.5
440,957 - IAI47_20960 0.46 +1.1
440,959 + IAI47_20960 0.46 -0.2
440,959 + IAI47_20960 0.46 -0.5
440,959 + IAI47_20960 0.46 -0.4
440,959 + IAI47_20960 0.46 +0.3
440,959 + IAI47_20960 0.46 +0.8
441,090 + IAI47_20960 0.61 -0.4
441,120 + IAI47_20960 0.65 -0.8
441,153 + IAI47_20960 0.68 -0.1
441,153 + IAI47_20960 0.68 +0.4
441,167 - IAI47_20960 0.70 +0.4
441,198 + IAI47_20960 0.73 -0.9
441,199 - IAI47_20960 0.74 -0.8
441,199 - IAI47_20960 0.74 +2.0
441,262 - IAI47_20960 0.81 -0.5
441,262 - IAI47_20960 0.81 -0.3
441,313 + IAI47_20960 0.86 -2.1
441,313 + IAI47_20960 0.86 -0.9
441,313 + IAI47_20960 0.86 +1.3
441,314 - IAI47_20960 0.87 +0.3
441,314 - IAI47_20960 0.87 +0.2
441,381 + +2.2
441,382 - -0.0
441,382 - +0.5
441,382 - -0.0
441,382 - -2.5
441,432 + +0.0
441,432 + +1.6
441,463 + +0.4
441,466 + -1.2
441,507 + +0.4
441,507 + -1.0
441,507 + +0.8
441,508 - -1.1
441,508 - -0.2
441,508 - -2.6
441,508 - -0.3
441,537 + -0.3
441,537 + +0.8
441,538 - +0.5
441,538 - +0.5
441,565 + -0.2
441,565 + +0.2
441,623 + IAI47_20965 0.11 -1.1
441,624 - IAI47_20965 0.11 -2.0
441,639 + IAI47_20965 0.14 +0.5
441,706 + IAI47_20965 0.25 -1.4
441,706 + IAI47_20965 0.25 +1.0
441,706 + IAI47_20965 0.25 -1.0
441,706 + IAI47_20965 0.25 -1.5
441,707 - IAI47_20965 0.25 +1.6
441,707 - IAI47_20965 0.25 -0.6
441,707 - IAI47_20965 0.25 -0.6
441,707 - IAI47_20965 0.25 +1.0
441,740 + IAI47_20965 0.30 -1.3
441,741 - IAI47_20965 0.31 -0.8
441,741 - IAI47_20965 0.31 -1.1
441,741 - IAI47_20965 0.31 +0.1
441,769 + IAI47_20965 0.35 +0.2
441,769 + IAI47_20965 0.35 -0.2
441,770 - IAI47_20965 0.35 -0.3
441,770 - IAI47_20965 0.35 +1.1
441,849 + IAI47_20965 0.48 -0.3
441,849 + IAI47_20965 0.48 -0.4
441,850 - IAI47_20965 0.49 -0.4
441,850 - IAI47_20965 0.49 -0.8
441,850 - IAI47_20965 0.49 -0.2
441,855 + IAI47_20965 0.49 -0.2
441,855 + IAI47_20965 0.49 +1.0
441,856 - IAI47_20965 0.50 -0.3
441,859 - IAI47_20965 0.50 +0.2
441,894 + IAI47_20965 0.56 -0.4
441,894 + IAI47_20965 0.56 +0.8
441,895 - IAI47_20965 0.56 +0.7
441,959 - IAI47_20965 0.67 +0.0
441,959 - IAI47_20965 0.67 -1.5
441,959 - IAI47_20965 0.67 -0.6
441,982 - IAI47_20965 0.70 +0.2
442,024 + IAI47_20965 0.77 -0.2
442,025 - IAI47_20965 0.77 +0.4
442,025 - IAI47_20965 0.77 -0.5
442,025 - IAI47_20965 0.77 -0.2
442,025 - IAI47_20965 0.77 +1.1
442,025 - IAI47_20965 0.77 -0.9
442,030 + IAI47_20965 0.78 -0.2
442,030 + IAI47_20965 0.78 -0.5
442,030 + IAI47_20965 0.78 +0.5
442,030 + IAI47_20965 0.78 +0.1
442,030 + IAI47_20965 0.78 -0.2
442,031 - IAI47_20965 0.78 -1.0
442,031 - IAI47_20965 0.78 -1.2
442,031 - IAI47_20965 0.78 +0.5
442,139 + +1.4
442,140 - -0.2
442,159 + -1.2
442,227 + -0.5
442,227 + +0.8
442,227 + +0.2
442,227 + -0.4
442,228 - +1.2
442,228 - -0.9
442,228 - +0.7
442,267 - -0.3
442,334 + -0.2
442,334 + -0.4
442,334 + -0.0
442,335 - +0.0
442,335 - +0.8
442,337 + +0.0

Or see this region's nucleotide sequence