Experiment: Ying_OrganicAcid7 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_19320 and IAI47_19325 are separated by 654 nucleotides IAI47_19325 and IAI47_19330 are separated by 506 nucleotides
IAI47_19320: IAI47_19320 - LysE family translocator, at 88,682 to 89,314
_19320
IAI47_19325: IAI47_19325 - transposase, at 89,969 to 90,253
_19325
IAI47_19330: IAI47_19330 - hypothetical protein, at 90,760 to 91,107
_19330
Position (kb) 89
90
91 Strain fitness (log2 ratio) -2
-1
0
1
2 at 88.994 kb on + strand, within IAI47_19320 at 88.994 kb on + strand, within IAI47_19320 at 89.039 kb on - strand, within IAI47_19320 at 89.058 kb on + strand, within IAI47_19320 at 89.061 kb on - strand, within IAI47_19320 at 89.098 kb on - strand, within IAI47_19320 at 89.098 kb on - strand, within IAI47_19320 at 89.104 kb on - strand, within IAI47_19320 at 89.150 kb on + strand, within IAI47_19320 at 89.150 kb on + strand, within IAI47_19320 at 89.151 kb on - strand, within IAI47_19320 at 89.151 kb on - strand, within IAI47_19320 at 89.154 kb on + strand, within IAI47_19320 at 89.155 kb on - strand, within IAI47_19320 at 89.155 kb on - strand, within IAI47_19320 at 89.155 kb on - strand, within IAI47_19320 at 89.156 kb on + strand, within IAI47_19320 at 89.156 kb on + strand, within IAI47_19320 at 89.183 kb on + strand, within IAI47_19320 at 89.184 kb on - strand, within IAI47_19320 at 89.190 kb on - strand, within IAI47_19320 at 89.217 kb on - strand, within IAI47_19320 at 89.236 kb on - strand, within IAI47_19320 at 89.258 kb on + strand at 89.259 kb on - strand at 89.259 kb on - strand at 89.303 kb on - strand at 89.352 kb on - strand at 89.374 kb on + strand at 89.391 kb on - strand at 89.419 kb on - strand at 89.450 kb on + strand at 89.473 kb on - strand at 89.497 kb on + strand at 89.507 kb on - strand at 89.510 kb on + strand at 89.535 kb on - strand at 89.548 kb on + strand at 89.552 kb on - strand at 89.602 kb on + strand at 89.619 kb on - strand at 89.658 kb on - strand at 89.689 kb on + strand at 89.736 kb on - strand at 89.864 kb on + strand at 89.865 kb on - strand at 89.866 kb on + strand at 89.866 kb on + strand at 89.867 kb on - strand at 89.910 kb on + strand at 89.910 kb on + strand at 89.915 kb on - strand at 89.926 kb on - strand at 89.939 kb on + strand at 89.940 kb on - strand at 89.957 kb on + strand at 89.959 kb on + strand at 89.960 kb on - strand at 89.960 kb on - strand at 89.960 kb on - strand at 90.005 kb on + strand, within IAI47_19325 at 90.005 kb on + strand, within IAI47_19325 at 90.049 kb on + strand, within IAI47_19325 at 90.049 kb on + strand, within IAI47_19325 at 90.049 kb on + strand, within IAI47_19325 at 90.049 kb on + strand, within IAI47_19325 at 90.049 kb on + strand, within IAI47_19325 at 90.049 kb on + strand, within IAI47_19325 at 90.050 kb on - strand, within IAI47_19325 at 90.050 kb on - strand, within IAI47_19325 at 90.090 kb on - strand, within IAI47_19325 at 90.142 kb on + strand, within IAI47_19325 at 90.245 kb on + strand at 90.245 kb on + strand at 90.284 kb on + strand at 90.284 kb on + strand at 90.284 kb on + strand at 90.284 kb on + strand at 90.284 kb on + strand at 90.284 kb on + strand at 90.285 kb on - strand at 90.285 kb on - strand at 90.285 kb on - strand at 90.285 kb on - strand at 90.285 kb on - strand at 90.287 kb on + strand at 90.288 kb on - strand at 90.298 kb on - strand at 90.298 kb on - strand at 90.301 kb on + strand at 90.301 kb on + strand at 90.301 kb on + strand at 90.327 kb on + strand at 90.328 kb on - strand at 90.402 kb on + strand at 90.402 kb on + strand at 90.403 kb on - strand at 90.403 kb on - strand at 90.419 kb on + strand at 90.419 kb on + strand at 90.489 kb on + strand at 90.490 kb on - strand at 90.530 kb on - strand at 90.557 kb on + strand at 90.601 kb on + strand at 90.695 kb on + strand at 90.696 kb on - strand at 90.696 kb on - strand at 90.719 kb on + strand at 90.719 kb on + strand at 90.720 kb on - strand at 90.726 kb on + strand at 90.726 kb on + strand at 90.726 kb on + strand at 90.726 kb on + strand at 90.727 kb on - strand at 90.727 kb on - strand at 90.727 kb on - strand at 90.727 kb on - strand at 90.727 kb on - strand at 90.727 kb on - strand at 90.727 kb on - strand at 90.727 kb on - strand at 90.727 kb on - strand at 90.775 kb on - strand at 90.800 kb on + strand, within IAI47_19330 at 90.800 kb on + strand, within IAI47_19330 at 90.801 kb on - strand, within IAI47_19330 at 90.825 kb on + strand, within IAI47_19330 at 90.825 kb on + strand, within IAI47_19330 at 90.826 kb on - strand, within IAI47_19330 at 90.884 kb on + strand, within IAI47_19330 at 90.897 kb on + strand, within IAI47_19330 at 90.898 kb on - strand, within IAI47_19330 at 90.951 kb on + strand, within IAI47_19330 at 90.951 kb on + strand, within IAI47_19330 at 90.952 kb on - strand, within IAI47_19330 at 90.952 kb on - strand, within IAI47_19330 at 90.968 kb on + strand, within IAI47_19330 at 90.969 kb on - strand, within IAI47_19330 at 90.975 kb on + strand, within IAI47_19330 at 90.975 kb on + strand, within IAI47_19330 at 90.976 kb on - strand, within IAI47_19330 at 90.993 kb on + strand, within IAI47_19330 at 90.993 kb on + strand, within IAI47_19330 at 90.993 kb on + strand, within IAI47_19330 at 91.006 kb on + strand, within IAI47_19330 at 91.007 kb on - strand, within IAI47_19330 at 91.007 kb on - strand, within IAI47_19330 at 91.007 kb on - strand, within IAI47_19330 at 91.007 kb on - strand, within IAI47_19330 at 91.032 kb on + strand, within IAI47_19330 at 91.032 kb on + strand, within IAI47_19330 at 91.043 kb on + strand, within IAI47_19330 at 91.052 kb on - strand, within IAI47_19330 at 91.106 kb on - strand at 91.126 kb on + strand at 91.217 kb on - strand at 91.225 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 1 remove 88,994 + IAI47_19320 0.49 -0.1 88,994 + IAI47_19320 0.49 +0.4 89,039 - IAI47_19320 0.56 -1.9 89,058 + IAI47_19320 0.59 +0.5 89,061 - IAI47_19320 0.60 +0.9 89,098 - IAI47_19320 0.66 -0.3 89,098 - IAI47_19320 0.66 -0.9 89,104 - IAI47_19320 0.67 +2.2 89,150 + IAI47_19320 0.74 -0.1 89,150 + IAI47_19320 0.74 +1.1 89,151 - IAI47_19320 0.74 +0.7 89,151 - IAI47_19320 0.74 +1.3 89,154 + IAI47_19320 0.75 +0.5 89,155 - IAI47_19320 0.75 +0.6 89,155 - IAI47_19320 0.75 +1.0 89,155 - IAI47_19320 0.75 +0.0 89,156 + IAI47_19320 0.75 -0.0 89,156 + IAI47_19320 0.75 -0.7 89,183 + IAI47_19320 0.79 -1.1 89,184 - IAI47_19320 0.79 +0.1 89,190 - IAI47_19320 0.80 -2.3 89,217 - IAI47_19320 0.85 -0.7 89,236 - IAI47_19320 0.88 +0.0 89,258 + +0.5 89,259 - -0.9 89,259 - -0.1 89,303 - -0.8 89,352 - +0.1 89,374 + -2.1 89,391 - -0.6 89,419 - -1.2 89,450 + +0.9 89,473 - +0.9 89,497 + +1.4 89,507 - -0.9 89,510 + -2.3 89,535 - +1.2 89,548 + +0.9 89,552 - +0.7 89,602 + +0.6 89,619 - +0.5 89,658 - +0.7 89,689 + -0.1 89,736 - +0.2 89,864 + -0.5 89,865 - +2.1 89,866 + +0.2 89,866 + -0.5 89,867 - +2.5 89,910 + +0.1 89,910 + +2.2 89,915 - -1.1 89,926 - +1.5 89,939 + +0.9 89,940 - +0.3 89,957 + -0.2 89,959 + -1.0 89,960 - +0.9 89,960 - -0.1 89,960 - -0.5 90,005 + IAI47_19325 0.13 -0.5 90,005 + IAI47_19325 0.13 -0.2 90,049 + IAI47_19325 0.28 -0.3 90,049 + IAI47_19325 0.28 +1.7 90,049 + IAI47_19325 0.28 -0.1 90,049 + IAI47_19325 0.28 +0.1 90,049 + IAI47_19325 0.28 -1.9 90,049 + IAI47_19325 0.28 +0.1 90,050 - IAI47_19325 0.28 +2.5 90,050 - IAI47_19325 0.28 -0.1 90,090 - IAI47_19325 0.42 +0.9 90,142 + IAI47_19325 0.61 -0.9 90,245 + +0.9 90,245 + -0.7 90,284 + +0.1 90,284 + +1.9 90,284 + -0.3 90,284 + -0.9 90,284 + -0.9 90,284 + +0.5 90,285 - +0.5 90,285 - -0.6 90,285 - +0.3 90,285 - +0.3 90,285 - +1.1 90,287 + +1.1 90,288 - -0.3 90,298 - +0.4 90,298 - +0.4 90,301 + +1.1 90,301 + +0.1 90,301 + -1.7 90,327 + -0.6 90,328 - +0.3 90,402 + +0.9 90,402 + +0.0 90,403 - +0.5 90,403 - -0.5 90,419 + -1.0 90,419 + -0.9 90,489 + -0.5 90,490 - -1.1 90,530 - -0.4 90,557 + +1.4 90,601 + +0.3 90,695 + -0.4 90,696 - +0.7 90,696 - -0.0 90,719 + -0.3 90,719 + -0.1 90,720 - -1.5 90,726 + -0.1 90,726 + +0.5 90,726 + +0.2 90,726 + -0.0 90,727 - +0.0 90,727 - -1.5 90,727 - -0.3 90,727 - +0.1 90,727 - +0.1 90,727 - +1.2 90,727 - -0.1 90,727 - -0.6 90,727 - -0.1 90,775 - +0.4 90,800 + IAI47_19330 0.11 +0.5 90,800 + IAI47_19330 0.11 -0.9 90,801 - IAI47_19330 0.12 -1.9 90,825 + IAI47_19330 0.19 -0.2 90,825 + IAI47_19330 0.19 -1.4 90,826 - IAI47_19330 0.19 -1.3 90,884 + IAI47_19330 0.36 -0.7 90,897 + IAI47_19330 0.39 -0.5 90,898 - IAI47_19330 0.40 +0.1 90,951 + IAI47_19330 0.55 -1.9 90,951 + IAI47_19330 0.55 -1.7 90,952 - IAI47_19330 0.55 -0.5 90,952 - IAI47_19330 0.55 -0.2 90,968 + IAI47_19330 0.60 -0.5 90,969 - IAI47_19330 0.60 +1.1 90,975 + IAI47_19330 0.62 -0.4 90,975 + IAI47_19330 0.62 +1.7 90,976 - IAI47_19330 0.62 +0.6 90,993 + IAI47_19330 0.67 +0.7 90,993 + IAI47_19330 0.67 +0.9 90,993 + IAI47_19330 0.67 -1.0 91,006 + IAI47_19330 0.71 +1.0 91,007 - IAI47_19330 0.71 +0.2 91,007 - IAI47_19330 0.71 +0.2 91,007 - IAI47_19330 0.71 +0.2 91,007 - IAI47_19330 0.71 +1.0 91,032 + IAI47_19330 0.78 -0.6 91,032 + IAI47_19330 0.78 +0.6 91,043 + IAI47_19330 0.81 +0.5 91,052 - IAI47_19330 0.84 -0.5 91,106 - +0.5 91,126 + +0.3 91,217 - +1.5 91,225 + +0.4
Or see this region's nucleotide sequence