Strain Fitness in Pantoea sp. MT58 around IAI47_16995

Experiment: Ying_OrganicAcid7 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep B; time point 1
3,605,835	-		IAI47_16995	0.37	+0.3
3,605,835	-		IAI47_16995	0.37	+1.5
3,605,835	-		IAI47_16995	0.37	+1.6
3,605,835	-		IAI47_16995	0.37	+0.6
3,605,839	-		IAI47_16995	0.44	-0.7
3,605,944	-				-0.9
3,605,944	-				+0.9
3,605,944	-				+0.6
3,605,954	-				+0.1
3,605,965	-				-1.2
3,605,965	-				+1.9
3,605,978	-				+1.3
3,605,978	-				-0.2
3,605,978	-				-1.0
3,605,998	-				-0.4
3,606,044	-				-0.9
3,606,127	-		IAI47_17000	0.17	-0.8
3,606,127	-		IAI47_17000	0.17	-1.5
3,606,127	-		IAI47_17000	0.17	+0.9
3,606,131	-		IAI47_17000	0.18	+0.3
3,606,131	-		IAI47_17000	0.18	+0.9
3,606,134	-		IAI47_17000	0.18	-2.1
3,606,134	-		IAI47_17000	0.18	-1.1
3,606,134	-		IAI47_17000	0.18	-0.5
3,606,134	-		IAI47_17000	0.18	-0.3
3,606,134	-		IAI47_17000	0.18	-0.7
3,606,134	-		IAI47_17000	0.18	-1.5
3,606,134	-		IAI47_17000	0.18	+0.5
3,606,134	-		IAI47_17000	0.18	+0.9
3,606,134	-		IAI47_17000	0.18	-0.1
3,606,134	-		IAI47_17000	0.18	-0.1
3,606,142	-		IAI47_17000	0.19	-1.7
3,606,142	-		IAI47_17000	0.19	-1.7
3,606,146	-		IAI47_17000	0.19	+1.1
3,606,146	-		IAI47_17000	0.19	-2.5
3,606,186	-		IAI47_17000	0.24	-0.9
3,606,186	-		IAI47_17000	0.24	-0.1
3,606,234	-		IAI47_17000	0.29	-0.1
3,606,234	-		IAI47_17000	0.29	-2.1
3,606,234	-		IAI47_17000	0.29	+1.5
3,606,234	-		IAI47_17000	0.29	-0.1
3,606,234	-		IAI47_17000	0.29	-1.5
3,606,234	-		IAI47_17000	0.29	-1.1
3,606,234	-		IAI47_17000	0.29	+0.4
3,606,234	-		IAI47_17000	0.29	+0.9
3,606,245	-		IAI47_17000	0.30	-0.5
3,606,245	-		IAI47_17000	0.30	+1.6
3,606,245	-		IAI47_17000	0.30	-0.5
3,606,245	-		IAI47_17000	0.30	-0.7
3,606,245	-		IAI47_17000	0.30	-0.5
3,606,258	-		IAI47_17000	0.32	-0.8
3,606,258	-		IAI47_17000	0.32	-0.7
3,606,258	-		IAI47_17000	0.32	+0.9
3,606,258	-		IAI47_17000	0.32	-0.0
3,606,258	-		IAI47_17000	0.32	-1.6
3,606,258	-		IAI47_17000	0.32	-1.7
3,606,258	-		IAI47_17000	0.32	+1.3
3,606,258	-		IAI47_17000	0.32	-0.7
3,606,258	-		IAI47_17000	0.32	-1.7
3,606,258	-		IAI47_17000	0.32	-0.9
3,606,350	-		IAI47_17000	0.42	+0.9
3,606,350	-		IAI47_17000	0.42	+0.9
3,606,378	-		IAI47_17000	0.45	+0.7
3,606,425	-		IAI47_17000	0.51	-0.0
3,606,425	-		IAI47_17000	0.51	+0.1
3,606,425	-		IAI47_17000	0.51	-0.7
3,606,440	-		IAI47_17000	0.52	+0.3
3,606,460	-		IAI47_17000	0.55	-0.1
3,606,470	-		IAI47_17000	0.56	-2.8
3,606,470	-		IAI47_17000	0.56	-2.1
3,606,470	-		IAI47_17000	0.56	-0.3
3,606,470	-		IAI47_17000	0.56	-1.7
3,606,470	-		IAI47_17000	0.56	-0.1
3,606,470	-		IAI47_17000	0.56	+0.1
3,606,470	-		IAI47_17000	0.56	-2.0
3,606,470	-		IAI47_17000	0.56	+0.3
3,606,470	-		IAI47_17000	0.56	-1.7
3,606,470	-		IAI47_17000	0.56	-1.6
3,606,476	-		IAI47_17000	0.56	-1.2
3,606,476	-		IAI47_17000	0.56	-1.1
3,606,476	-		IAI47_17000	0.56	-2.2
3,606,476	-		IAI47_17000	0.56	-0.2
3,606,496	-		IAI47_17000	0.59	+1.9
3,606,515	-		IAI47_17000	0.61	-0.7
3,606,515	-		IAI47_17000	0.61	-1.3
3,606,544	-		IAI47_17000	0.64	+0.1
3,606,548	-		IAI47_17000	0.65	+0.6
3,606,548	-		IAI47_17000	0.65	-1.3
3,606,548	-		IAI47_17000	0.65	-0.4
3,606,548	-		IAI47_17000	0.65	-1.0
3,606,548	-		IAI47_17000	0.65	-0.7
3,606,550	-		IAI47_17000	0.65	+1.1
3,606,550	-		IAI47_17000	0.65	+1.5
3,606,550	-		IAI47_17000	0.65	-0.9
3,606,550	-		IAI47_17000	0.65	+0.2
3,606,550	-		IAI47_17000	0.65	-0.5
3,606,556	-		IAI47_17000	0.66	+0.5
3,606,556	-		IAI47_17000	0.66	-1.8
3,606,560	-		IAI47_17000	0.66	-0.9
3,606,560	-		IAI47_17000	0.66	-1.9
3,606,564	-		IAI47_17000	0.66	-1.0
3,606,564	-		IAI47_17000	0.66	-0.7
3,606,579	-		IAI47_17000	0.68	-0.5
3,606,579	-		IAI47_17000	0.68	-0.9
3,606,579	-		IAI47_17000	0.68	-0.6
3,606,579	-		IAI47_17000	0.68	-0.7
3,606,591	-		IAI47_17000	0.69	+0.0
3,606,642	-		IAI47_17000	0.75	+0.5
3,606,642	-		IAI47_17000	0.75	-0.1
3,606,642	-		IAI47_17000	0.75	-0.4
3,606,646	+		IAI47_17000	0.76	-0.8
3,606,646	+		IAI47_17000	0.76	-1.0
3,606,647	-		IAI47_17000	0.76	-0.9
3,606,664	+		IAI47_17000	0.78	+1.9
3,606,665	-		IAI47_17000	0.78	+0.1
3,606,665	-		IAI47_17000	0.78	-0.1
3,606,667	-		IAI47_17000	0.78	+0.2
3,606,667	-		IAI47_17000	0.78	+0.9
3,606,667	-		IAI47_17000	0.78	-0.5
3,606,667	-		IAI47_17000	0.78	-0.1
3,606,733	-		IAI47_17000	0.86	-1.1
3,606,759	+		IAI47_17000	0.88	-2.5
3,606,759	+		IAI47_17000	0.88	-0.5
3,606,760	-		IAI47_17000	0.89	-2.8
3,606,785	+				-0.9
3,606,785	+				-0.8
3,606,786	-				-1.3
3,606,786	-				-1.3
3,606,786	-				+0.3
3,606,862	+				-0.9