Experiment: Ying_OrganicAcid7 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_03900 and IAI47_03905 are separated by 118 nucleotides IAI47_03905 and IAI47_03910 are separated by 99 nucleotides IAI47_03910 and IAI47_03915 are separated by 684 nucleotides
IAI47_03900: IAI47_03900 - YgdI/YgdR family lipoprotein, at 813,202 to 813,420
_03900
IAI47_03905: IAI47_03905 - TerC family protein, at 813,539 to 814,249
_03905
IAI47_03910: IAI47_03910 - DNA mismatch repair endonuclease MutH, at 814,349 to 815,026
_03910
IAI47_03915: IAI47_03915 - RNA pyrophosphohydrolase, at 815,711 to 816,238
_03915
Position (kb) 814
815
816 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 813.350 kb on + strand, within IAI47_03900 at 813.350 kb on + strand, within IAI47_03900 at 813.350 kb on + strand, within IAI47_03900 at 813.350 kb on + strand, within IAI47_03900 at 813.350 kb on + strand, within IAI47_03900 at 813.350 kb on + strand, within IAI47_03900 at 813.350 kb on + strand, within IAI47_03900 at 813.350 kb on + strand, within IAI47_03900 at 813.351 kb on - strand, within IAI47_03900 at 813.351 kb on - strand, within IAI47_03900 at 813.351 kb on - strand, within IAI47_03900 at 813.370 kb on + strand, within IAI47_03900 at 813.370 kb on + strand, within IAI47_03900 at 813.370 kb on + strand, within IAI47_03900 at 813.371 kb on - strand, within IAI47_03900 at 813.371 kb on - strand, within IAI47_03900 at 813.371 kb on - strand, within IAI47_03900 at 813.371 kb on - strand, within IAI47_03900 at 813.401 kb on - strand at 813.401 kb on - strand at 813.401 kb on - strand at 813.401 kb on - strand at 813.459 kb on + strand at 813.459 kb on + strand at 813.459 kb on + strand at 813.459 kb on + strand at 813.460 kb on - strand at 813.460 kb on - strand at 813.460 kb on - strand at 813.460 kb on - strand at 813.460 kb on - strand at 813.460 kb on - strand at 813.460 kb on - strand at 813.462 kb on + strand at 813.462 kb on + strand at 813.462 kb on + strand at 813.462 kb on + strand at 813.463 kb on - strand at 813.463 kb on - strand at 813.465 kb on + strand at 813.465 kb on + strand at 813.465 kb on + strand at 813.465 kb on + strand at 813.465 kb on + strand at 813.466 kb on - strand at 813.466 kb on - strand at 813.466 kb on - strand at 813.466 kb on - strand at 813.466 kb on - strand at 813.466 kb on - strand at 813.466 kb on - strand at 813.488 kb on - strand at 813.507 kb on + strand at 813.507 kb on + strand at 813.507 kb on + strand at 813.507 kb on + strand at 813.508 kb on - strand at 813.537 kb on + strand at 813.538 kb on - strand at 813.538 kb on - strand at 813.556 kb on + strand at 813.571 kb on + strand at 813.572 kb on - strand at 813.572 kb on - strand at 813.609 kb on + strand at 813.609 kb on + strand at 813.609 kb on + strand at 813.610 kb on - strand, within IAI47_03905 at 813.610 kb on - strand, within IAI47_03905 at 813.615 kb on + strand, within IAI47_03905 at 813.615 kb on + strand, within IAI47_03905 at 813.616 kb on - strand, within IAI47_03905 at 813.626 kb on + strand, within IAI47_03905 at 813.627 kb on - strand, within IAI47_03905 at 813.659 kb on - strand, within IAI47_03905 at 813.659 kb on - strand, within IAI47_03905 at 813.659 kb on - strand, within IAI47_03905 at 813.784 kb on + strand, within IAI47_03905 at 813.784 kb on + strand, within IAI47_03905 at 813.784 kb on + strand, within IAI47_03905 at 813.784 kb on + strand, within IAI47_03905 at 813.785 kb on - strand, within IAI47_03905 at 813.785 kb on - strand, within IAI47_03905 at 813.820 kb on + strand, within IAI47_03905 at 813.820 kb on + strand, within IAI47_03905 at 813.821 kb on - strand, within IAI47_03905 at 813.821 kb on - strand, within IAI47_03905 at 813.841 kb on + strand, within IAI47_03905 at 813.842 kb on - strand, within IAI47_03905 at 813.856 kb on + strand, within IAI47_03905 at 813.856 kb on + strand, within IAI47_03905 at 813.856 kb on + strand, within IAI47_03905 at 813.856 kb on + strand, within IAI47_03905 at 813.856 kb on + strand, within IAI47_03905 at 813.857 kb on - strand, within IAI47_03905 at 813.857 kb on - strand, within IAI47_03905 at 813.857 kb on - strand, within IAI47_03905 at 813.857 kb on - strand, within IAI47_03905 at 813.857 kb on - strand, within IAI47_03905 at 813.863 kb on + strand, within IAI47_03905 at 813.863 kb on + strand, within IAI47_03905 at 813.864 kb on - strand, within IAI47_03905 at 813.898 kb on + strand, within IAI47_03905 at 813.898 kb on + strand, within IAI47_03905 at 813.898 kb on + strand, within IAI47_03905 at 813.898 kb on + strand, within IAI47_03905 at 813.898 kb on + strand, within IAI47_03905 at 813.898 kb on + strand, within IAI47_03905 at 813.899 kb on - strand, within IAI47_03905 at 813.899 kb on - strand, within IAI47_03905 at 813.899 kb on - strand, within IAI47_03905 at 813.899 kb on - strand, within IAI47_03905 at 813.899 kb on - strand, within IAI47_03905 at 813.899 kb on - strand, within IAI47_03905 at 813.899 kb on - strand, within IAI47_03905 at 813.899 kb on - strand, within IAI47_03905 at 813.899 kb on - strand, within IAI47_03905 at 813.899 kb on - strand, within IAI47_03905 at 814.019 kb on - strand, within IAI47_03905 at 814.030 kb on + strand, within IAI47_03905 at 814.030 kb on + strand, within IAI47_03905 at 814.030 kb on + strand, within IAI47_03905 at 814.030 kb on + strand, within IAI47_03905 at 814.054 kb on + strand, within IAI47_03905 at 814.055 kb on - strand, within IAI47_03905 at 814.138 kb on + strand, within IAI47_03905 at 814.138 kb on + strand, within IAI47_03905 at 814.139 kb on - strand, within IAI47_03905 at 814.139 kb on - strand, within IAI47_03905 at 814.139 kb on - strand, within IAI47_03905 at 814.139 kb on - strand, within IAI47_03905 at 814.168 kb on + strand, within IAI47_03905 at 814.168 kb on + strand, within IAI47_03905 at 814.168 kb on + strand, within IAI47_03905 at 814.168 kb on + strand, within IAI47_03905 at 814.168 kb on + strand, within IAI47_03905 at 814.168 kb on + strand, within IAI47_03905 at 814.168 kb on + strand, within IAI47_03905 at 814.169 kb on - strand, within IAI47_03905 at 814.169 kb on - strand, within IAI47_03905 at 814.169 kb on - strand, within IAI47_03905 at 814.174 kb on + strand, within IAI47_03905 at 814.175 kb on - strand, within IAI47_03905 at 814.175 kb on - strand, within IAI47_03905 at 814.289 kb on + strand at 814.289 kb on + strand at 814.290 kb on - strand at 814.290 kb on - strand at 814.290 kb on - strand at 814.401 kb on + strand at 814.401 kb on + strand at 814.402 kb on - strand at 814.402 kb on - strand at 814.402 kb on - strand at 814.423 kb on + strand, within IAI47_03910 at 814.423 kb on + strand, within IAI47_03910 at 814.423 kb on + strand, within IAI47_03910 at 814.424 kb on - strand, within IAI47_03910 at 814.424 kb on - strand, within IAI47_03910 at 814.424 kb on - strand, within IAI47_03910 at 814.424 kb on - strand, within IAI47_03910 at 814.447 kb on + strand, within IAI47_03910 at 814.447 kb on + strand, within IAI47_03910 at 814.447 kb on + strand, within IAI47_03910 at 814.447 kb on + strand, within IAI47_03910 at 814.448 kb on - strand, within IAI47_03910 at 814.448 kb on - strand, within IAI47_03910 at 814.448 kb on - strand, within IAI47_03910 at 814.448 kb on - strand, within IAI47_03910 at 814.448 kb on - strand, within IAI47_03910 at 814.465 kb on + strand, within IAI47_03910 at 814.516 kb on + strand, within IAI47_03910 at 814.517 kb on - strand, within IAI47_03910 at 814.538 kb on + strand, within IAI47_03910 at 814.538 kb on + strand, within IAI47_03910 at 814.538 kb on + strand, within IAI47_03910 at 814.538 kb on + strand, within IAI47_03910 at 814.538 kb on + strand, within IAI47_03910 at 814.539 kb on - strand, within IAI47_03910 at 814.539 kb on - strand, within IAI47_03910 at 814.546 kb on + strand, within IAI47_03910 at 814.546 kb on + strand, within IAI47_03910 at 814.546 kb on + strand, within IAI47_03910 at 814.546 kb on + strand, within IAI47_03910 at 814.547 kb on - strand, within IAI47_03910 at 814.547 kb on - strand, within IAI47_03910 at 814.677 kb on - strand, within IAI47_03910 at 814.865 kb on + strand, within IAI47_03910 at 814.865 kb on + strand, within IAI47_03910 at 814.865 kb on + strand, within IAI47_03910 at 814.866 kb on - strand, within IAI47_03910 at 814.866 kb on - strand, within IAI47_03910 at 814.866 kb on - strand, within IAI47_03910 at 814.866 kb on - strand, within IAI47_03910 at 814.894 kb on + strand, within IAI47_03910 at 814.894 kb on + strand, within IAI47_03910 at 814.894 kb on + strand, within IAI47_03910 at 814.895 kb on - strand, within IAI47_03910 at 814.903 kb on + strand, within IAI47_03910 at 814.955 kb on + strand, within IAI47_03910 at 814.955 kb on + strand, within IAI47_03910 at 814.956 kb on - strand, within IAI47_03910 at 815.019 kb on + strand at 815.020 kb on - strand at 815.020 kb on - strand at 815.032 kb on + strand at 815.032 kb on + strand at 815.032 kb on + strand at 815.032 kb on + strand at 815.033 kb on - strand at 815.109 kb on + strand at 815.110 kb on - strand at 815.112 kb on + strand at 815.112 kb on + strand at 815.112 kb on + strand at 815.112 kb on + strand at 815.112 kb on + strand at 815.112 kb on + strand at 815.113 kb on - strand at 815.113 kb on - strand at 815.120 kb on + strand at 815.120 kb on + strand at 815.121 kb on - strand at 815.121 kb on - strand at 815.121 kb on - strand at 815.175 kb on + strand at 815.175 kb on + strand at 815.185 kb on + strand at 815.248 kb on - strand at 815.271 kb on + strand at 815.271 kb on + strand at 815.271 kb on + strand at 815.271 kb on + strand at 815.272 kb on - strand at 815.272 kb on - strand at 815.272 kb on - strand at 815.272 kb on - strand at 815.272 kb on - strand at 815.272 kb on - strand at 815.300 kb on + strand at 815.320 kb on - strand at 815.334 kb on - strand at 815.366 kb on + strand at 815.392 kb on + strand at 815.443 kb on + strand at 815.447 kb on + strand at 815.453 kb on - strand at 815.554 kb on + strand at 815.584 kb on - strand at 815.660 kb on + strand at 815.660 kb on + strand at 815.660 kb on + strand at 815.660 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 1 remove 813,350 + IAI47_03900 0.68 +0.4 813,350 + IAI47_03900 0.68 +0.1 813,350 + IAI47_03900 0.68 +0.1 813,350 + IAI47_03900 0.68 -0.7 813,350 + IAI47_03900 0.68 +0.4 813,350 + IAI47_03900 0.68 +0.7 813,350 + IAI47_03900 0.68 +0.8 813,350 + IAI47_03900 0.68 -0.9 813,351 - IAI47_03900 0.68 +1.3 813,351 - IAI47_03900 0.68 -0.5 813,351 - IAI47_03900 0.68 -0.9 813,370 + IAI47_03900 0.77 -0.3 813,370 + IAI47_03900 0.77 -0.2 813,370 + IAI47_03900 0.77 -0.6 813,371 - IAI47_03900 0.77 -0.2 813,371 - IAI47_03900 0.77 -0.0 813,371 - IAI47_03900 0.77 -0.2 813,371 - IAI47_03900 0.77 -0.8 813,401 - +0.8 813,401 - -0.5 813,401 - -0.7 813,401 - +1.8 813,459 + +0.8 813,459 + +0.4 813,459 + +0.1 813,459 + -0.3 813,460 - -0.0 813,460 - -0.3 813,460 - +1.3 813,460 - +1.6 813,460 - -0.7 813,460 - +0.7 813,460 - +0.6 813,462 + -0.7 813,462 + +1.1 813,462 + +0.4 813,462 + -0.7 813,463 - +1.0 813,463 - +0.1 813,465 + -0.5 813,465 + -1.6 813,465 + +0.7 813,465 + -0.5 813,465 + -0.0 813,466 - +1.3 813,466 - -0.7 813,466 - -0.5 813,466 - -0.5 813,466 - +0.5 813,466 - +0.1 813,466 - +1.3 813,488 - +0.3 813,507 + +0.5 813,507 + +0.2 813,507 + +0.3 813,507 + -0.2 813,508 - -0.7 813,537 + +0.4 813,538 - +1.8 813,538 - +0.4 813,556 + -0.2 813,571 + +0.8 813,572 - +0.3 813,572 - -1.5 813,609 + -0.2 813,609 + -1.2 813,609 + -0.2 813,610 - IAI47_03905 0.10 -0.2 813,610 - IAI47_03905 0.10 -0.0 813,615 + IAI47_03905 0.11 -0.7 813,615 + IAI47_03905 0.11 -2.2 813,616 - IAI47_03905 0.11 -1.3 813,626 + IAI47_03905 0.12 -1.4 813,627 - IAI47_03905 0.12 -1.2 813,659 - IAI47_03905 0.17 -2.2 813,659 - IAI47_03905 0.17 -2.5 813,659 - IAI47_03905 0.17 -2.2 813,784 + IAI47_03905 0.34 -3.1 813,784 + IAI47_03905 0.34 +1.8 813,784 + IAI47_03905 0.34 -0.7 813,784 + IAI47_03905 0.34 -0.7 813,785 - IAI47_03905 0.35 -0.5 813,785 - IAI47_03905 0.35 -1.3 813,820 + IAI47_03905 0.40 -0.2 813,820 + IAI47_03905 0.40 +1.8 813,821 - IAI47_03905 0.40 -0.8 813,821 - IAI47_03905 0.40 -0.2 813,841 + IAI47_03905 0.42 -2.2 813,842 - IAI47_03905 0.43 -1.3 813,856 + IAI47_03905 0.45 -0.9 813,856 + IAI47_03905 0.45 -2.1 813,856 + IAI47_03905 0.45 -0.3 813,856 + IAI47_03905 0.45 -0.0 813,856 + IAI47_03905 0.45 -0.7 813,857 - IAI47_03905 0.45 -0.4 813,857 - IAI47_03905 0.45 -0.7 813,857 - IAI47_03905 0.45 -0.7 813,857 - IAI47_03905 0.45 +0.8 813,857 - IAI47_03905 0.45 -0.6 813,863 + IAI47_03905 0.46 -2.6 813,863 + IAI47_03905 0.46 -1.2 813,864 - IAI47_03905 0.46 +0.5 813,898 + IAI47_03905 0.50 -1.2 813,898 + IAI47_03905 0.50 -1.2 813,898 + IAI47_03905 0.50 -1.6 813,898 + IAI47_03905 0.50 -0.1 813,898 + IAI47_03905 0.50 -1.2 813,898 + IAI47_03905 0.50 -0.2 813,899 - IAI47_03905 0.51 +0.1 813,899 - IAI47_03905 0.51 -1.6 813,899 - IAI47_03905 0.51 -0.2 813,899 - IAI47_03905 0.51 +0.3 813,899 - IAI47_03905 0.51 -1.3 813,899 - IAI47_03905 0.51 +2.2 813,899 - IAI47_03905 0.51 -2.2 813,899 - IAI47_03905 0.51 +0.3 813,899 - IAI47_03905 0.51 -1.6 813,899 - IAI47_03905 0.51 +0.8 814,019 - IAI47_03905 0.68 -2.3 814,030 + IAI47_03905 0.69 -2.6 814,030 + IAI47_03905 0.69 -1.7 814,030 + IAI47_03905 0.69 -0.4 814,030 + IAI47_03905 0.69 -2.5 814,054 + IAI47_03905 0.72 -0.2 814,055 - IAI47_03905 0.73 -0.2 814,138 + IAI47_03905 0.84 -0.2 814,138 + IAI47_03905 0.84 +0.0 814,139 - IAI47_03905 0.84 -0.2 814,139 - IAI47_03905 0.84 +0.3 814,139 - IAI47_03905 0.84 -2.5 814,139 - IAI47_03905 0.84 -2.6 814,168 + IAI47_03905 0.88 -1.5 814,168 + IAI47_03905 0.88 -1.8 814,168 + IAI47_03905 0.88 +1.2 814,168 + IAI47_03905 0.88 -2.6 814,168 + IAI47_03905 0.88 -1.3 814,168 + IAI47_03905 0.88 +1.8 814,168 + IAI47_03905 0.88 +0.4 814,169 - IAI47_03905 0.89 +0.2 814,169 - IAI47_03905 0.89 -1.2 814,169 - IAI47_03905 0.89 -0.2 814,174 + IAI47_03905 0.89 -1.3 814,175 - IAI47_03905 0.89 +0.1 814,175 - IAI47_03905 0.89 -0.7 814,289 + -0.5 814,289 + -0.2 814,290 - +0.4 814,290 - -1.6 814,290 - -1.5 814,401 + +0.5 814,401 + +0.8 814,402 - -0.0 814,402 - -0.9 814,402 - -0.5 814,423 + IAI47_03910 0.11 +0.7 814,423 + IAI47_03910 0.11 -1.0 814,423 + IAI47_03910 0.11 -0.1 814,424 - IAI47_03910 0.11 -1.1 814,424 - IAI47_03910 0.11 -2.6 814,424 - IAI47_03910 0.11 +1.5 814,424 - IAI47_03910 0.11 +0.3 814,447 + IAI47_03910 0.14 -0.4 814,447 + IAI47_03910 0.14 +0.4 814,447 + IAI47_03910 0.14 +0.1 814,447 + IAI47_03910 0.14 +0.5 814,448 - IAI47_03910 0.15 -0.2 814,448 - IAI47_03910 0.15 +0.8 814,448 - IAI47_03910 0.15 +0.6 814,448 - IAI47_03910 0.15 -0.6 814,448 - IAI47_03910 0.15 +0.8 814,465 + IAI47_03910 0.17 +1.1 814,516 + IAI47_03910 0.25 +0.5 814,517 - IAI47_03910 0.25 -0.2 814,538 + IAI47_03910 0.28 +0.6 814,538 + IAI47_03910 0.28 +1.3 814,538 + IAI47_03910 0.28 +0.8 814,538 + IAI47_03910 0.28 +1.4 814,538 + IAI47_03910 0.28 +1.8 814,539 - IAI47_03910 0.28 +0.8 814,539 - IAI47_03910 0.28 -1.7 814,546 + IAI47_03910 0.29 -0.6 814,546 + IAI47_03910 0.29 -1.5 814,546 + IAI47_03910 0.29 +0.8 814,546 + IAI47_03910 0.29 -1.0 814,547 - IAI47_03910 0.29 -0.2 814,547 - IAI47_03910 0.29 +0.6 814,677 - IAI47_03910 0.48 -0.7 814,865 + IAI47_03910 0.76 -1.3 814,865 + IAI47_03910 0.76 +1.0 814,865 + IAI47_03910 0.76 -0.3 814,866 - IAI47_03910 0.76 +0.0 814,866 - IAI47_03910 0.76 +0.8 814,866 - IAI47_03910 0.76 -0.0 814,866 - IAI47_03910 0.76 +0.0 814,894 + IAI47_03910 0.80 +0.0 814,894 + IAI47_03910 0.80 +0.4 814,894 + IAI47_03910 0.80 +1.6 814,895 - IAI47_03910 0.81 -0.7 814,903 + IAI47_03910 0.82 -2.3 814,955 + IAI47_03910 0.89 +0.8 814,955 + IAI47_03910 0.89 +0.3 814,956 - IAI47_03910 0.90 -0.8 815,019 + -0.7 815,020 - +0.6 815,020 - -0.9 815,032 + -0.5 815,032 + +0.4 815,032 + +0.1 815,032 + +0.7 815,033 - +0.6 815,109 + +0.5 815,110 - +1.3 815,112 + -0.3 815,112 + +0.1 815,112 + -0.5 815,112 + +0.0 815,112 + +1.4 815,112 + -2.3 815,113 - +0.7 815,113 - -0.2 815,120 + +0.3 815,120 + +0.4 815,121 - +0.3 815,121 - -0.8 815,121 - +0.0 815,175 + +0.1 815,175 + -0.7 815,185 + -1.0 815,248 - -1.4 815,271 + +0.1 815,271 + -0.3 815,271 + +0.8 815,271 + +0.7 815,272 - +0.8 815,272 - -0.5 815,272 - +1.0 815,272 - -0.1 815,272 - +0.0 815,272 - -0.3 815,300 + +0.0 815,320 - -0.4 815,334 - +0.7 815,366 + +0.8 815,392 + +0.1 815,443 + -0.0 815,447 + -1.4 815,453 - +0.4 815,554 + +1.3 815,584 - +0.4 815,660 + +0.1 815,660 + +0.1 815,660 + -1.5 815,660 + +0.4
Or see this region's nucleotide sequence