Experiment: Ying_OrganicAcid7 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_03235 and IAI47_03240 are separated by 6 nucleotides IAI47_03240 and IAI47_03245 are separated by 236 nucleotides
IAI47_03235: IAI47_03235 - tol-pal system-associated acyl-CoA thioesterase, at 671,045 to 671,767
_03235
IAI47_03240: IAI47_03240 - TonB system transport protein ExbD, at 671,774 to 672,196
_03240
IAI47_03245: IAI47_03245 - MFS transporter, at 672,433 to 673,758
_03245
Position (kb) 671
672
673 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 670.795 kb on + strand at 670.795 kb on + strand at 670.795 kb on + strand at 670.795 kb on + strand at 670.796 kb on - strand at 670.796 kb on - strand at 670.796 kb on - strand at 670.796 kb on - strand at 670.796 kb on - strand at 670.796 kb on - strand at 670.977 kb on + strand at 670.977 kb on + strand at 670.980 kb on + strand at 670.981 kb on - strand at 671.075 kb on + strand at 671.075 kb on + strand at 671.075 kb on + strand at 671.075 kb on + strand at 671.075 kb on + strand at 671.075 kb on + strand at 671.075 kb on + strand at 671.075 kb on + strand at 671.075 kb on + strand at 671.075 kb on + strand at 671.075 kb on + strand at 671.075 kb on + strand at 671.076 kb on - strand at 671.076 kb on - strand at 671.090 kb on - strand at 671.162 kb on + strand, within IAI47_03235 at 671.162 kb on + strand, within IAI47_03235 at 671.162 kb on + strand, within IAI47_03235 at 671.163 kb on - strand, within IAI47_03235 at 671.163 kb on - strand, within IAI47_03235 at 671.163 kb on - strand, within IAI47_03235 at 671.163 kb on - strand, within IAI47_03235 at 671.163 kb on - strand, within IAI47_03235 at 671.227 kb on + strand, within IAI47_03235 at 671.233 kb on + strand, within IAI47_03235 at 671.233 kb on + strand, within IAI47_03235 at 671.234 kb on - strand, within IAI47_03235 at 671.234 kb on - strand, within IAI47_03235 at 671.234 kb on - strand, within IAI47_03235 at 671.315 kb on + strand, within IAI47_03235 at 671.338 kb on + strand, within IAI47_03235 at 671.338 kb on + strand, within IAI47_03235 at 671.351 kb on - strand, within IAI47_03235 at 671.351 kb on - strand, within IAI47_03235 at 671.455 kb on + strand, within IAI47_03235 at 671.455 kb on + strand, within IAI47_03235 at 671.612 kb on + strand, within IAI47_03235 at 671.613 kb on - strand, within IAI47_03235 at 671.613 kb on - strand, within IAI47_03235 at 671.639 kb on - strand, within IAI47_03235 at 671.642 kb on + strand, within IAI47_03235 at 671.643 kb on - strand, within IAI47_03235 at 671.643 kb on - strand, within IAI47_03235 at 671.643 kb on - strand, within IAI47_03235 at 671.765 kb on + strand at 671.765 kb on + strand at 671.765 kb on + strand at 671.765 kb on + strand at 671.766 kb on - strand at 671.766 kb on - strand at 671.773 kb on + strand at 671.774 kb on - strand at 671.827 kb on + strand, within IAI47_03240 at 671.827 kb on + strand, within IAI47_03240 at 671.842 kb on + strand, within IAI47_03240 at 671.876 kb on - strand, within IAI47_03240 at 671.876 kb on - strand, within IAI47_03240 at 671.966 kb on + strand, within IAI47_03240 at 671.966 kb on + strand, within IAI47_03240 at 671.967 kb on - strand, within IAI47_03240 at 671.967 kb on - strand, within IAI47_03240 at 671.975 kb on - strand, within IAI47_03240 at 671.975 kb on - strand, within IAI47_03240 at 671.975 kb on - strand, within IAI47_03240 at 671.987 kb on - strand, within IAI47_03240 at 671.996 kb on + strand, within IAI47_03240 at 671.997 kb on - strand, within IAI47_03240 at 671.997 kb on - strand, within IAI47_03240 at 672.107 kb on + strand, within IAI47_03240 at 672.133 kb on + strand, within IAI47_03240 at 672.133 kb on + strand, within IAI47_03240 at 672.134 kb on - strand, within IAI47_03240 at 672.152 kb on + strand, within IAI47_03240 at 672.194 kb on + strand at 672.195 kb on - strand at 672.203 kb on - strand at 672.215 kb on + strand at 672.215 kb on + strand at 672.215 kb on + strand at 672.215 kb on + strand at 672.215 kb on + strand at 672.215 kb on + strand at 672.215 kb on + strand at 672.216 kb on - strand at 672.216 kb on - strand at 672.216 kb on - strand at 672.216 kb on - strand at 672.216 kb on - strand at 672.226 kb on + strand at 672.226 kb on + strand at 672.226 kb on + strand at 672.226 kb on + strand at 672.227 kb on - strand at 672.245 kb on + strand at 672.246 kb on - strand at 672.301 kb on + strand at 672.301 kb on + strand at 672.301 kb on + strand at 672.301 kb on + strand at 672.301 kb on + strand at 672.301 kb on + strand at 672.301 kb on + strand at 672.302 kb on - strand at 672.302 kb on - strand at 672.302 kb on - strand at 672.302 kb on - strand at 672.302 kb on - strand at 672.302 kb on - strand at 672.302 kb on - strand at 672.334 kb on + strand at 672.335 kb on - strand at 672.338 kb on + strand at 672.338 kb on + strand at 672.338 kb on + strand at 672.339 kb on - strand at 672.339 kb on - strand at 672.339 kb on - strand at 672.342 kb on + strand at 672.346 kb on + strand at 672.355 kb on - strand at 672.382 kb on + strand at 672.382 kb on + strand at 672.383 kb on - strand at 672.402 kb on + strand at 672.402 kb on + strand at 672.421 kb on + strand at 672.422 kb on - strand at 672.422 kb on - strand at 672.432 kb on + strand at 672.432 kb on + strand at 672.433 kb on - strand at 672.483 kb on + strand at 672.483 kb on + strand at 672.483 kb on + strand at 672.484 kb on - strand at 672.484 kb on - strand at 672.484 kb on - strand at 672.484 kb on - strand at 672.504 kb on + strand at 672.505 kb on - strand at 672.505 kb on - strand at 672.520 kb on + strand at 672.520 kb on + strand at 672.520 kb on + strand at 672.521 kb on - strand at 672.541 kb on + strand at 672.542 kb on - strand at 672.544 kb on + strand at 672.544 kb on + strand at 672.544 kb on + strand at 672.545 kb on - strand at 672.545 kb on - strand at 672.545 kb on - strand at 672.545 kb on - strand at 672.545 kb on - strand at 672.662 kb on + strand, within IAI47_03245 at 672.670 kb on + strand, within IAI47_03245 at 672.670 kb on + strand, within IAI47_03245 at 672.671 kb on - strand, within IAI47_03245 at 672.671 kb on - strand, within IAI47_03245 at 672.671 kb on - strand, within IAI47_03245 at 672.671 kb on - strand, within IAI47_03245 at 672.671 kb on - strand, within IAI47_03245 at 672.671 kb on - strand, within IAI47_03245 at 672.671 kb on - strand, within IAI47_03245 at 672.693 kb on + strand, within IAI47_03245 at 672.694 kb on - strand, within IAI47_03245 at 672.720 kb on - strand, within IAI47_03245 at 672.732 kb on + strand, within IAI47_03245 at 672.733 kb on - strand, within IAI47_03245 at 672.761 kb on - strand, within IAI47_03245 at 672.761 kb on - strand, within IAI47_03245 at 672.761 kb on - strand, within IAI47_03245 at 672.765 kb on + strand, within IAI47_03245 at 672.765 kb on + strand, within IAI47_03245 at 672.765 kb on + strand, within IAI47_03245 at 672.766 kb on - strand, within IAI47_03245 at 672.766 kb on - strand, within IAI47_03245 at 672.770 kb on + strand, within IAI47_03245 at 672.770 kb on + strand, within IAI47_03245 at 672.771 kb on - strand, within IAI47_03245 at 672.771 kb on - strand, within IAI47_03245 at 672.771 kb on - strand, within IAI47_03245 at 672.848 kb on + strand, within IAI47_03245 at 672.856 kb on + strand, within IAI47_03245 at 672.856 kb on + strand, within IAI47_03245 at 672.856 kb on + strand, within IAI47_03245 at 672.857 kb on - strand, within IAI47_03245 at 673.051 kb on + strand, within IAI47_03245 at 673.051 kb on + strand, within IAI47_03245 at 673.051 kb on + strand, within IAI47_03245 at 673.051 kb on + strand, within IAI47_03245 at 673.051 kb on + strand, within IAI47_03245 at 673.052 kb on - strand, within IAI47_03245 at 673.052 kb on - strand, within IAI47_03245 at 673.052 kb on - strand, within IAI47_03245 at 673.052 kb on - strand, within IAI47_03245 at 673.052 kb on - strand, within IAI47_03245 at 673.052 kb on - strand, within IAI47_03245 at 673.052 kb on - strand, within IAI47_03245 at 673.052 kb on - strand, within IAI47_03245 at 673.052 kb on - strand, within IAI47_03245 at 673.052 kb on - strand, within IAI47_03245 at 673.053 kb on + strand, within IAI47_03245 at 673.054 kb on - strand, within IAI47_03245 at 673.089 kb on + strand, within IAI47_03245 at 673.095 kb on + strand, within IAI47_03245 at 673.095 kb on + strand, within IAI47_03245 at 673.096 kb on - strand, within IAI47_03245 at 673.096 kb on - strand, within IAI47_03245 at 673.096 kb on - strand, within IAI47_03245 at 673.096 kb on - strand, within IAI47_03245
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 1 remove 670,795 + +0.3 670,795 + +0.9 670,795 + +2.4 670,795 + +0.2 670,796 - +1.4 670,796 - +0.7 670,796 - -0.6 670,796 - -0.1 670,796 - -2.3 670,796 - +0.9 670,977 + -0.4 670,977 + -2.5 670,980 + -0.1 670,981 - -0.8 671,075 + +0.1 671,075 + +0.7 671,075 + +0.9 671,075 + -0.7 671,075 + +0.9 671,075 + +0.9 671,075 + +2.2 671,075 + -1.3 671,075 + -2.5 671,075 + -0.6 671,075 + -1.0 671,075 + +1.3 671,076 - +0.9 671,076 - +0.2 671,090 - -1.1 671,162 + IAI47_03235 0.16 +1.3 671,162 + IAI47_03235 0.16 +0.0 671,162 + IAI47_03235 0.16 -1.7 671,163 - IAI47_03235 0.16 -0.1 671,163 - IAI47_03235 0.16 +0.0 671,163 - IAI47_03235 0.16 +1.5 671,163 - IAI47_03235 0.16 -0.3 671,163 - IAI47_03235 0.16 -0.1 671,227 + IAI47_03235 0.25 +0.0 671,233 + IAI47_03235 0.26 +0.4 671,233 + IAI47_03235 0.26 +1.6 671,234 - IAI47_03235 0.26 -1.7 671,234 - IAI47_03235 0.26 -0.5 671,234 - IAI47_03235 0.26 -0.6 671,315 + IAI47_03235 0.37 -1.5 671,338 + IAI47_03235 0.41 +0.9 671,338 + IAI47_03235 0.41 -0.7 671,351 - IAI47_03235 0.42 +1.7 671,351 - IAI47_03235 0.42 -0.7 671,455 + IAI47_03235 0.57 +1.3 671,455 + IAI47_03235 0.57 +1.4 671,612 + IAI47_03235 0.78 +0.3 671,613 - IAI47_03235 0.79 -0.1 671,613 - IAI47_03235 0.79 -1.5 671,639 - IAI47_03235 0.82 -0.7 671,642 + IAI47_03235 0.83 +0.9 671,643 - IAI47_03235 0.83 +0.7 671,643 - IAI47_03235 0.83 -0.5 671,643 - IAI47_03235 0.83 +1.9 671,765 + -0.1 671,765 + -0.7 671,765 + +0.6 671,765 + +0.6 671,766 - +1.4 671,766 - -1.5 671,773 + -1.1 671,774 - -1.7 671,827 + IAI47_03240 0.13 -1.1 671,827 + IAI47_03240 0.13 +1.2 671,842 + IAI47_03240 0.16 +1.3 671,876 - IAI47_03240 0.24 -0.1 671,876 - IAI47_03240 0.24 -1.7 671,966 + IAI47_03240 0.45 -0.1 671,966 + IAI47_03240 0.45 +0.9 671,967 - IAI47_03240 0.46 +0.3 671,967 - IAI47_03240 0.46 -0.3 671,975 - IAI47_03240 0.48 -0.7 671,975 - IAI47_03240 0.48 +0.4 671,975 - IAI47_03240 0.48 +1.4 671,987 - IAI47_03240 0.50 -0.7 671,996 + IAI47_03240 0.52 -0.1 671,997 - IAI47_03240 0.53 +0.3 671,997 - IAI47_03240 0.53 -1.8 672,107 + IAI47_03240 0.79 -0.1 672,133 + IAI47_03240 0.85 +0.9 672,133 + IAI47_03240 0.85 -0.7 672,134 - IAI47_03240 0.85 -0.5 672,152 + IAI47_03240 0.89 -1.1 672,194 + +0.6 672,195 - -0.7 672,203 - +0.0 672,215 + +1.1 672,215 + +1.7 672,215 + -0.7 672,215 + -0.5 672,215 + +0.4 672,215 + -0.3 672,215 + -0.3 672,216 - -1.0 672,216 - -2.1 672,216 - -0.1 672,216 - -0.2 672,216 - +0.4 672,226 + +1.2 672,226 + -1.1 672,226 + +0.9 672,226 + -1.3 672,227 - +0.7 672,245 + +0.1 672,246 - -1.1 672,301 + -2.1 672,301 + +1.9 672,301 + -0.3 672,301 + +1.1 672,301 + +0.9 672,301 + -0.0 672,301 + +0.2 672,302 - -1.5 672,302 - -0.8 672,302 - -0.3 672,302 - -0.9 672,302 - -1.5 672,302 - +1.0 672,302 - +0.7 672,334 + +1.1 672,335 - +1.2 672,338 + +0.9 672,338 + +0.3 672,338 + +0.1 672,339 - -0.0 672,339 - +2.2 672,339 - -1.7 672,342 + +0.3 672,346 + +0.3 672,355 - -0.6 672,382 + +0.5 672,382 + +0.2 672,383 - +0.3 672,402 + +0.3 672,402 + -1.5 672,421 + -0.3 672,422 - -1.5 672,422 - +2.3 672,432 + -1.1 672,432 + +1.2 672,433 - -1.6 672,483 + -0.3 672,483 + +1.1 672,483 + -0.3 672,484 - +0.2 672,484 - +0.0 672,484 - -1.6 672,484 - -1.2 672,504 + -0.5 672,505 - -0.7 672,505 - -0.0 672,520 + -0.9 672,520 + +0.4 672,520 + +2.1 672,521 - -0.1 672,541 + +0.9 672,542 - +1.4 672,544 + +0.4 672,544 + -0.4 672,544 + -1.5 672,545 - -0.6 672,545 - -2.0 672,545 - +1.0 672,545 - -0.6 672,545 - +0.0 672,662 + IAI47_03245 0.17 +0.7 672,670 + IAI47_03245 0.18 -0.6 672,670 + IAI47_03245 0.18 -0.1 672,671 - IAI47_03245 0.18 +0.2 672,671 - IAI47_03245 0.18 +0.1 672,671 - IAI47_03245 0.18 -1.1 672,671 - IAI47_03245 0.18 +1.3 672,671 - IAI47_03245 0.18 +0.2 672,671 - IAI47_03245 0.18 -0.7 672,671 - IAI47_03245 0.18 +0.3 672,693 + IAI47_03245 0.20 +1.0 672,694 - IAI47_03245 0.20 -1.3 672,720 - IAI47_03245 0.22 -0.4 672,732 + IAI47_03245 0.23 +0.4 672,733 - IAI47_03245 0.23 +0.1 672,761 - IAI47_03245 0.25 +0.9 672,761 - IAI47_03245 0.25 +1.5 672,761 - IAI47_03245 0.25 -0.1 672,765 + IAI47_03245 0.25 +0.0 672,765 + IAI47_03245 0.25 +0.9 672,765 + IAI47_03245 0.25 -0.2 672,766 - IAI47_03245 0.25 -0.1 672,766 - IAI47_03245 0.25 -0.5 672,770 + IAI47_03245 0.25 -0.5 672,770 + IAI47_03245 0.25 +0.2 672,771 - IAI47_03245 0.25 -0.3 672,771 - IAI47_03245 0.25 -0.3 672,771 - IAI47_03245 0.25 -1.7 672,848 + IAI47_03245 0.31 -0.6 672,856 + IAI47_03245 0.32 -2.8 672,856 + IAI47_03245 0.32 +0.7 672,856 + IAI47_03245 0.32 +0.0 672,857 - IAI47_03245 0.32 +0.0 673,051 + IAI47_03245 0.47 -0.6 673,051 + IAI47_03245 0.47 -0.3 673,051 + IAI47_03245 0.47 +0.5 673,051 + IAI47_03245 0.47 +3.0 673,051 + IAI47_03245 0.47 -0.1 673,052 - IAI47_03245 0.47 -1.1 673,052 - IAI47_03245 0.47 +1.3 673,052 - IAI47_03245 0.47 -0.1 673,052 - IAI47_03245 0.47 -0.0 673,052 - IAI47_03245 0.47 -0.1 673,052 - IAI47_03245 0.47 -0.1 673,052 - IAI47_03245 0.47 -0.8 673,052 - IAI47_03245 0.47 +0.1 673,052 - IAI47_03245 0.47 +0.7 673,052 - IAI47_03245 0.47 -0.5 673,053 + IAI47_03245 0.47 -0.4 673,054 - IAI47_03245 0.47 +1.0 673,089 + IAI47_03245 0.49 +1.4 673,095 + IAI47_03245 0.50 -0.9 673,095 + IAI47_03245 0.50 +0.9 673,096 - IAI47_03245 0.50 +0.9 673,096 - IAI47_03245 0.50 +0.5 673,096 - IAI47_03245 0.50 +1.4 673,096 - IAI47_03245 0.50 -0.1
Or see this region's nucleotide sequence