Experiment: butyrate (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04263 and MPMX20_04264 are separated by 30 nucleotides MPMX20_04264 and MPMX20_04265 overlap by 11 nucleotides MPMX20_04265 and MPMX20_04266 are separated by 107 nucleotides MPMX20_04266 and MPMX20_04267 are separated by 278 nucleotides
MPMX20_04263: MPMX20_04263 - Aminodeoxychorismate synthase component 2, at 4,446,084 to 4,446,647
_04263
MPMX20_04264: MPMX20_04264 - putative protein adenylyltransferase Fic, at 4,446,678 to 4,447,280
_04264
MPMX20_04265: MPMX20_04265 - putative protein YhfG, at 4,447,270 to 4,447,437
_04265
MPMX20_04266: MPMX20_04266 - Peptidyl-prolyl cis-trans isomerase A, at 4,447,545 to 4,448,117
_04266
MPMX20_04267: MPMX20_04267 - Protein TsgA, at 4,448,396 to 4,449,580
_04267
Position (kb)
4447
4448
4449 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 4446.572 kb on + strand, within MPMX20_04263 at 4446.605 kb on + strand at 4446.605 kb on + strand at 4446.606 kb on - strand at 4446.683 kb on - strand at 4446.748 kb on + strand, within MPMX20_04264 at 4446.791 kb on + strand, within MPMX20_04264 at 4446.848 kb on + strand, within MPMX20_04264 at 4446.874 kb on + strand, within MPMX20_04264 at 4446.940 kb on + strand, within MPMX20_04264 at 4446.959 kb on - strand, within MPMX20_04264 at 4447.029 kb on - strand, within MPMX20_04264 at 4447.031 kb on + strand, within MPMX20_04264 at 4447.039 kb on - strand, within MPMX20_04264 at 4447.107 kb on - strand, within MPMX20_04264 at 4447.130 kb on + strand, within MPMX20_04264 at 4447.130 kb on + strand, within MPMX20_04264 at 4447.130 kb on + strand, within MPMX20_04264 at 4447.130 kb on + strand, within MPMX20_04264 at 4447.130 kb on + strand, within MPMX20_04264 at 4447.138 kb on - strand, within MPMX20_04264 at 4447.138 kb on - strand, within MPMX20_04264 at 4447.138 kb on - strand, within MPMX20_04264 at 4447.138 kb on - strand, within MPMX20_04264 at 4447.296 kb on + strand, within MPMX20_04265 at 4447.526 kb on - strand at 4447.543 kb on + strand at 4447.543 kb on + strand at 4447.551 kb on - strand at 4447.604 kb on + strand, within MPMX20_04266 at 4447.604 kb on + strand, within MPMX20_04266 at 4447.642 kb on + strand, within MPMX20_04266 at 4447.654 kb on - strand, within MPMX20_04266 at 4447.705 kb on - strand, within MPMX20_04266 at 4447.737 kb on + strand, within MPMX20_04266 at 4447.737 kb on + strand, within MPMX20_04266 at 4447.755 kb on + strand, within MPMX20_04266 at 4447.755 kb on + strand, within MPMX20_04266 at 4447.755 kb on + strand, within MPMX20_04266 at 4447.755 kb on + strand, within MPMX20_04266 at 4447.763 kb on - strand, within MPMX20_04266 at 4447.763 kb on - strand, within MPMX20_04266 at 4447.775 kb on + strand, within MPMX20_04266 at 4447.775 kb on + strand, within MPMX20_04266 at 4447.795 kb on + strand, within MPMX20_04266 at 4447.803 kb on - strand, within MPMX20_04266 at 4447.842 kb on - strand, within MPMX20_04266 at 4447.883 kb on - strand, within MPMX20_04266 at 4447.905 kb on + strand, within MPMX20_04266 at 4447.913 kb on - strand, within MPMX20_04266 at 4448.164 kb on + strand at 4448.180 kb on + strand at 4448.388 kb on + strand at 4448.388 kb on + strand at 4448.396 kb on - strand at 4448.396 kb on - strand at 4448.396 kb on - strand at 4448.396 kb on - strand at 4448.473 kb on - strand at 4448.482 kb on + strand at 4448.505 kb on + strand at 4448.513 kb on - strand at 4448.513 kb on - strand at 4448.513 kb on - strand at 4448.513 kb on - strand at 4448.530 kb on + strand, within MPMX20_04267 at 4448.530 kb on + strand, within MPMX20_04267 at 4448.538 kb on - strand, within MPMX20_04267 at 4448.544 kb on - strand, within MPMX20_04267 at 4448.546 kb on - strand, within MPMX20_04267 at 4448.546 kb on - strand, within MPMX20_04267 at 4448.601 kb on - strand, within MPMX20_04267 at 4448.684 kb on + strand, within MPMX20_04267 at 4448.684 kb on + strand, within MPMX20_04267 at 4448.692 kb on - strand, within MPMX20_04267 at 4448.727 kb on + strand, within MPMX20_04267 at 4448.735 kb on - strand, within MPMX20_04267 at 4448.735 kb on - strand, within MPMX20_04267 at 4448.800 kb on - strand, within MPMX20_04267 at 4448.879 kb on - strand, within MPMX20_04267 at 4448.879 kb on - strand, within MPMX20_04267 at 4448.888 kb on + strand, within MPMX20_04267 at 4448.903 kb on + strand, within MPMX20_04267 at 4448.927 kb on + strand, within MPMX20_04267 at 4448.974 kb on + strand, within MPMX20_04267 at 4448.984 kb on - strand, within MPMX20_04267 at 4449.022 kb on + strand, within MPMX20_04267 at 4449.022 kb on + strand, within MPMX20_04267 at 4449.043 kb on + strand, within MPMX20_04267 at 4449.051 kb on - strand, within MPMX20_04267 at 4449.051 kb on - strand, within MPMX20_04267 at 4449.051 kb on - strand, within MPMX20_04267 at 4449.061 kb on + strand, within MPMX20_04267 at 4449.106 kb on - strand, within MPMX20_04267 at 4449.111 kb on - strand, within MPMX20_04267
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (N) remove 4,446,572 + MPMX20_04263 0.87 -0.6 4,446,605 + +2.3 4,446,605 + -3.5 4,446,606 - -0.2 4,446,683 - -0.1 4,446,748 + MPMX20_04264 0.12 +1.2 4,446,791 + MPMX20_04264 0.19 -1.1 4,446,848 + MPMX20_04264 0.28 -0.0 4,446,874 + MPMX20_04264 0.33 -1.9 4,446,940 + MPMX20_04264 0.43 +0.9 4,446,959 - MPMX20_04264 0.47 -0.0 4,447,029 - MPMX20_04264 0.58 +1.2 4,447,031 + MPMX20_04264 0.59 -1.2 4,447,039 - MPMX20_04264 0.60 +2.9 4,447,107 - MPMX20_04264 0.71 -0.7 4,447,130 + MPMX20_04264 0.75 +0.2 4,447,130 + MPMX20_04264 0.75 -1.6 4,447,130 + MPMX20_04264 0.75 +1.8 4,447,130 + MPMX20_04264 0.75 -0.9 4,447,130 + MPMX20_04264 0.75 +0.6 4,447,138 - MPMX20_04264 0.76 +0.2 4,447,138 - MPMX20_04264 0.76 -0.4 4,447,138 - MPMX20_04264 0.76 -0.1 4,447,138 - MPMX20_04264 0.76 +0.2 4,447,296 + MPMX20_04265 0.15 -2.1 4,447,526 - -1.7 4,447,543 + +0.2 4,447,543 + +1.4 4,447,551 - -1.0 4,447,604 + MPMX20_04266 0.10 +1.8 4,447,604 + MPMX20_04266 0.10 +1.3 4,447,642 + MPMX20_04266 0.17 -1.2 4,447,654 - MPMX20_04266 0.19 -2.6 4,447,705 - MPMX20_04266 0.28 +2.4 4,447,737 + MPMX20_04266 0.34 -0.2 4,447,737 + MPMX20_04266 0.34 -1.0 4,447,755 + MPMX20_04266 0.37 +0.2 4,447,755 + MPMX20_04266 0.37 -1.4 4,447,755 + MPMX20_04266 0.37 -1.2 4,447,755 + MPMX20_04266 0.37 -2.1 4,447,763 - MPMX20_04266 0.38 +2.5 4,447,763 - MPMX20_04266 0.38 +0.5 4,447,775 + MPMX20_04266 0.40 +2.4 4,447,775 + MPMX20_04266 0.40 +1.5 4,447,795 + MPMX20_04266 0.44 +1.6 4,447,803 - MPMX20_04266 0.45 -0.5 4,447,842 - MPMX20_04266 0.52 +0.9 4,447,883 - MPMX20_04266 0.59 +0.9 4,447,905 + MPMX20_04266 0.63 +2.0 4,447,913 - MPMX20_04266 0.64 -3.4 4,448,164 + -0.4 4,448,180 + -2.0 4,448,388 + -2.1 4,448,388 + -3.3 4,448,396 - -0.1 4,448,396 - -1.9 4,448,396 - -3.5 4,448,396 - +0.3 4,448,473 - -1.5 4,448,482 + -2.1 4,448,505 + -1.0 4,448,513 - -0.0 4,448,513 - -0.7 4,448,513 - +2.1 4,448,513 - +0.8 4,448,530 + MPMX20_04267 0.11 +0.7 4,448,530 + MPMX20_04267 0.11 +2.6 4,448,538 - MPMX20_04267 0.12 +0.3 4,448,544 - MPMX20_04267 0.12 -2.9 4,448,546 - MPMX20_04267 0.13 -1.6 4,448,546 - MPMX20_04267 0.13 +2.4 4,448,601 - MPMX20_04267 0.17 -1.6 4,448,684 + MPMX20_04267 0.24 -2.5 4,448,684 + MPMX20_04267 0.24 -0.8 4,448,692 - MPMX20_04267 0.25 -0.3 4,448,727 + MPMX20_04267 0.28 -0.0 4,448,735 - MPMX20_04267 0.29 -1.2 4,448,735 - MPMX20_04267 0.29 -0.0 4,448,800 - MPMX20_04267 0.34 +0.1 4,448,879 - MPMX20_04267 0.41 -0.3 4,448,879 - MPMX20_04267 0.41 -3.4 4,448,888 + MPMX20_04267 0.42 -0.5 4,448,903 + MPMX20_04267 0.43 -2.9 4,448,927 + MPMX20_04267 0.45 +1.1 4,448,974 + MPMX20_04267 0.49 +0.8 4,448,984 - MPMX20_04267 0.50 +1.2 4,449,022 + MPMX20_04267 0.53 -2.2 4,449,022 + MPMX20_04267 0.53 +2.0 4,449,043 + MPMX20_04267 0.55 +1.4 4,449,051 - MPMX20_04267 0.55 +0.5 4,449,051 - MPMX20_04267 0.55 -3.0 4,449,051 - MPMX20_04267 0.55 -2.3 4,449,061 + MPMX20_04267 0.56 +1.3 4,449,106 - MPMX20_04267 0.60 +0.5 4,449,111 - MPMX20_04267 0.60 -0.4
Or see this region's nucleotide sequence