Experiment: butyrate (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01775 and MPMX20_01776 are separated by 121 nucleotides MPMX20_01776 and MPMX20_01777 are separated by 2 nucleotides MPMX20_01777 and MPMX20_01778 overlap by 11 nucleotides MPMX20_01778 and MPMX20_01779 overlap by 4 nucleotides
MPMX20_01775: MPMX20_01775 - 3-oxoacyl-[acyl-carrier-protein] synthase 2, at 1,867,010 to 1,868,251
_01775
MPMX20_01776: MPMX20_01776 - Aminodeoxychorismate lyase, at 1,868,373 to 1,869,182
_01776
MPMX20_01777: MPMX20_01777 - Endolytic murein transglycosylase, at 1,869,185 to 1,870,207
_01777
MPMX20_01778: MPMX20_01778 - Thymidylate kinase, at 1,870,197 to 1,870,838
_01778
MPMX20_01779: MPMX20_01779 - DNA polymerase III subunit delta', at 1,870,835 to 1,871,839
_01779
Position (kb)
1869
1870
1871 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1868.185 kb on + strand at 1868.192 kb on - strand at 1868.194 kb on + strand at 1868.250 kb on + strand at 1868.315 kb on - strand at 1868.352 kb on - strand at 1868.354 kb on - strand at 1868.389 kb on + strand at 1868.389 kb on + strand at 1868.420 kb on - strand at 1868.420 kb on - strand at 1868.455 kb on - strand, within MPMX20_01776 at 1868.511 kb on + strand, within MPMX20_01776 at 1868.514 kb on - strand, within MPMX20_01776 at 1868.688 kb on - strand, within MPMX20_01776 at 1868.719 kb on + strand, within MPMX20_01776 at 1868.719 kb on + strand, within MPMX20_01776 at 1868.719 kb on + strand, within MPMX20_01776 at 1868.727 kb on - strand, within MPMX20_01776 at 1868.727 kb on - strand, within MPMX20_01776 at 1868.771 kb on + strand, within MPMX20_01776 at 1868.793 kb on + strand, within MPMX20_01776 at 1868.793 kb on - strand, within MPMX20_01776 at 1868.803 kb on + strand, within MPMX20_01776 at 1868.803 kb on + strand, within MPMX20_01776 at 1868.803 kb on + strand, within MPMX20_01776 at 1869.009 kb on + strand, within MPMX20_01776 at 1869.058 kb on - strand, within MPMX20_01776 at 1869.114 kb on + strand at 1869.122 kb on - strand at 1869.168 kb on + strand at 1869.277 kb on + strand at 1869.285 kb on - strand at 1869.287 kb on - strand at 1869.287 kb on - strand at 1869.323 kb on + strand, within MPMX20_01777 at 1869.352 kb on + strand, within MPMX20_01777 at 1869.411 kb on + strand, within MPMX20_01777 at 1869.487 kb on + strand, within MPMX20_01777 at 1869.496 kb on + strand, within MPMX20_01777 at 1869.651 kb on - strand, within MPMX20_01777 at 1869.676 kb on + strand, within MPMX20_01777 at 1869.892 kb on + strand, within MPMX20_01777 at 1869.900 kb on - strand, within MPMX20_01777 at 1869.984 kb on + strand, within MPMX20_01777 at 1869.992 kb on - strand, within MPMX20_01777 at 1870.003 kb on - strand, within MPMX20_01777 at 1870.045 kb on + strand, within MPMX20_01777 at 1870.067 kb on + strand, within MPMX20_01777 at 1870.163 kb on + strand at 1870.816 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (N) remove 1,868,185 + +1.2 1,868,192 - +0.6 1,868,194 + -0.7 1,868,250 + +0.2 1,868,315 - -0.1 1,868,352 - +1.2 1,868,354 - -1.7 1,868,389 + -1.6 1,868,389 + +1.0 1,868,420 - +1.8 1,868,420 - -3.3 1,868,455 - MPMX20_01776 0.10 -0.2 1,868,511 + MPMX20_01776 0.17 +1.3 1,868,514 - MPMX20_01776 0.17 -1.1 1,868,688 - MPMX20_01776 0.39 -0.7 1,868,719 + MPMX20_01776 0.43 -2.8 1,868,719 + MPMX20_01776 0.43 +1.8 1,868,719 + MPMX20_01776 0.43 +0.9 1,868,727 - MPMX20_01776 0.44 +1.3 1,868,727 - MPMX20_01776 0.44 -1.3 1,868,771 + MPMX20_01776 0.49 +0.4 1,868,793 + MPMX20_01776 0.52 +1.1 1,868,793 - MPMX20_01776 0.52 +0.0 1,868,803 + MPMX20_01776 0.53 -0.9 1,868,803 + MPMX20_01776 0.53 +1.0 1,868,803 + MPMX20_01776 0.53 -0.1 1,869,009 + MPMX20_01776 0.79 +0.8 1,869,058 - MPMX20_01776 0.85 +0.9 1,869,114 + -0.6 1,869,122 - -0.4 1,869,168 + +1.2 1,869,277 + +0.5 1,869,285 - +2.4 1,869,287 - +0.5 1,869,287 - +0.2 1,869,323 + MPMX20_01777 0.13 -2.9 1,869,352 + MPMX20_01777 0.16 +0.1 1,869,411 + MPMX20_01777 0.22 -0.1 1,869,487 + MPMX20_01777 0.30 -0.3 1,869,496 + MPMX20_01777 0.30 -2.6 1,869,651 - MPMX20_01777 0.46 -1.8 1,869,676 + MPMX20_01777 0.48 +0.8 1,869,892 + MPMX20_01777 0.69 +0.9 1,869,900 - MPMX20_01777 0.70 -2.9 1,869,984 + MPMX20_01777 0.78 +1.1 1,869,992 - MPMX20_01777 0.79 -2.7 1,870,003 - MPMX20_01777 0.80 +0.5 1,870,045 + MPMX20_01777 0.84 -1.1 1,870,067 + MPMX20_01777 0.86 +1.9 1,870,163 + +0.1 1,870,816 + -1.7
Or see this region's nucleotide sequence