Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01777

Experiment: butyrate (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01775 and MPMX20_01776 are separated by 121 nucleotidesMPMX20_01776 and MPMX20_01777 are separated by 2 nucleotidesMPMX20_01777 and MPMX20_01778 overlap by 11 nucleotidesMPMX20_01778 and MPMX20_01779 overlap by 4 nucleotides MPMX20_01775: MPMX20_01775 - 3-oxoacyl-[acyl-carrier-protein] synthase 2, at 1,867,010 to 1,868,251 _01775 MPMX20_01776: MPMX20_01776 - Aminodeoxychorismate lyase, at 1,868,373 to 1,869,182 _01776 MPMX20_01777: MPMX20_01777 - Endolytic murein transglycosylase, at 1,869,185 to 1,870,207 _01777 MPMX20_01778: MPMX20_01778 - Thymidylate kinase, at 1,870,197 to 1,870,838 _01778 MPMX20_01779: MPMX20_01779 - DNA polymerase III subunit delta', at 1,870,835 to 1,871,839 _01779 Position (kb) 1869 1870 1871Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1868.185 kb on + strandat 1868.192 kb on - strandat 1868.194 kb on + strandat 1868.250 kb on + strandat 1868.315 kb on - strandat 1868.352 kb on - strandat 1868.354 kb on - strandat 1868.389 kb on + strandat 1868.389 kb on + strandat 1868.420 kb on - strandat 1868.420 kb on - strandat 1868.455 kb on - strand, within MPMX20_01776at 1868.511 kb on + strand, within MPMX20_01776at 1868.514 kb on - strand, within MPMX20_01776at 1868.688 kb on - strand, within MPMX20_01776at 1868.719 kb on + strand, within MPMX20_01776at 1868.719 kb on + strand, within MPMX20_01776at 1868.719 kb on + strand, within MPMX20_01776at 1868.727 kb on - strand, within MPMX20_01776at 1868.727 kb on - strand, within MPMX20_01776at 1868.771 kb on + strand, within MPMX20_01776at 1868.793 kb on + strand, within MPMX20_01776at 1868.793 kb on - strand, within MPMX20_01776at 1868.803 kb on + strand, within MPMX20_01776at 1868.803 kb on + strand, within MPMX20_01776at 1868.803 kb on + strand, within MPMX20_01776at 1869.009 kb on + strand, within MPMX20_01776at 1869.058 kb on - strand, within MPMX20_01776at 1869.114 kb on + strandat 1869.122 kb on - strandat 1869.168 kb on + strandat 1869.277 kb on + strandat 1869.285 kb on - strandat 1869.287 kb on - strandat 1869.287 kb on - strandat 1869.323 kb on + strand, within MPMX20_01777at 1869.352 kb on + strand, within MPMX20_01777at 1869.411 kb on + strand, within MPMX20_01777at 1869.487 kb on + strand, within MPMX20_01777at 1869.496 kb on + strand, within MPMX20_01777at 1869.651 kb on - strand, within MPMX20_01777at 1869.676 kb on + strand, within MPMX20_01777at 1869.892 kb on + strand, within MPMX20_01777at 1869.900 kb on - strand, within MPMX20_01777at 1869.984 kb on + strand, within MPMX20_01777at 1869.992 kb on - strand, within MPMX20_01777at 1870.003 kb on - strand, within MPMX20_01777at 1870.045 kb on + strand, within MPMX20_01777at 1870.067 kb on + strand, within MPMX20_01777at 1870.163 kb on + strandat 1870.816 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction butyrate (N)
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1,868,185 + +1.2
1,868,192 - +0.6
1,868,194 + -0.7
1,868,250 + +0.2
1,868,315 - -0.1
1,868,352 - +1.2
1,868,354 - -1.7
1,868,389 + -1.6
1,868,389 + +1.0
1,868,420 - +1.8
1,868,420 - -3.3
1,868,455 - MPMX20_01776 0.10 -0.2
1,868,511 + MPMX20_01776 0.17 +1.3
1,868,514 - MPMX20_01776 0.17 -1.1
1,868,688 - MPMX20_01776 0.39 -0.7
1,868,719 + MPMX20_01776 0.43 -2.8
1,868,719 + MPMX20_01776 0.43 +1.8
1,868,719 + MPMX20_01776 0.43 +0.9
1,868,727 - MPMX20_01776 0.44 +1.3
1,868,727 - MPMX20_01776 0.44 -1.3
1,868,771 + MPMX20_01776 0.49 +0.4
1,868,793 + MPMX20_01776 0.52 +1.1
1,868,793 - MPMX20_01776 0.52 +0.0
1,868,803 + MPMX20_01776 0.53 -0.9
1,868,803 + MPMX20_01776 0.53 +1.0
1,868,803 + MPMX20_01776 0.53 -0.1
1,869,009 + MPMX20_01776 0.79 +0.8
1,869,058 - MPMX20_01776 0.85 +0.9
1,869,114 + -0.6
1,869,122 - -0.4
1,869,168 + +1.2
1,869,277 + +0.5
1,869,285 - +2.4
1,869,287 - +0.5
1,869,287 - +0.2
1,869,323 + MPMX20_01777 0.13 -2.9
1,869,352 + MPMX20_01777 0.16 +0.1
1,869,411 + MPMX20_01777 0.22 -0.1
1,869,487 + MPMX20_01777 0.30 -0.3
1,869,496 + MPMX20_01777 0.30 -2.6
1,869,651 - MPMX20_01777 0.46 -1.8
1,869,676 + MPMX20_01777 0.48 +0.8
1,869,892 + MPMX20_01777 0.69 +0.9
1,869,900 - MPMX20_01777 0.70 -2.9
1,869,984 + MPMX20_01777 0.78 +1.1
1,869,992 - MPMX20_01777 0.79 -2.7
1,870,003 - MPMX20_01777 0.80 +0.5
1,870,045 + MPMX20_01777 0.84 -1.1
1,870,067 + MPMX20_01777 0.86 +1.9
1,870,163 + +0.1
1,870,816 + -1.7

Or see this region's nucleotide sequence