Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01557

Experiment: butyrate (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01556 and MPMX20_01557 are separated by 10 nucleotidesMPMX20_01557 and MPMX20_01558 are separated by 1 nucleotides MPMX20_01556: MPMX20_01556 - Dimethyl sulfoxide reductase DmsA, at 1,633,070 to 1,635,511 _01556 MPMX20_01557: MPMX20_01557 - Anaerobic dimethyl sulfoxide reductase chain B, at 1,635,522 to 1,636,139 _01557 MPMX20_01558: MPMX20_01558 - Anaerobic dimethyl sulfoxide reductase chain C, at 1,636,141 to 1,637,004 _01558 Position (kb) 1635 1636 1637Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1634.645 kb on + strand, within MPMX20_01556at 1634.650 kb on + strand, within MPMX20_01556at 1634.658 kb on - strand, within MPMX20_01556at 1634.661 kb on + strand, within MPMX20_01556at 1634.661 kb on + strand, within MPMX20_01556at 1634.669 kb on - strand, within MPMX20_01556at 1634.775 kb on + strand, within MPMX20_01556at 1634.775 kb on + strand, within MPMX20_01556at 1634.783 kb on - strand, within MPMX20_01556at 1634.837 kb on + strand, within MPMX20_01556at 1634.927 kb on - strand, within MPMX20_01556at 1634.956 kb on + strand, within MPMX20_01556at 1634.964 kb on - strand, within MPMX20_01556at 1634.995 kb on + strand, within MPMX20_01556at 1634.995 kb on + strand, within MPMX20_01556at 1635.177 kb on - strand, within MPMX20_01556at 1635.191 kb on + strand, within MPMX20_01556at 1635.191 kb on + strand, within MPMX20_01556at 1635.199 kb on - strand, within MPMX20_01556at 1635.199 kb on - strand, within MPMX20_01556at 1635.199 kb on - strand, within MPMX20_01556at 1635.219 kb on - strand, within MPMX20_01556at 1635.305 kb on - strandat 1635.330 kb on - strandat 1635.333 kb on + strandat 1635.370 kb on + strandat 1635.405 kb on + strandat 1635.460 kb on + strandat 1635.513 kb on - strandat 1635.513 kb on - strandat 1636.100 kb on + strandat 1636.141 kb on - strandat 1636.202 kb on - strandat 1636.216 kb on - strandat 1636.233 kb on + strand, within MPMX20_01558at 1636.233 kb on + strand, within MPMX20_01558at 1636.241 kb on - strand, within MPMX20_01558at 1636.273 kb on + strand, within MPMX20_01558at 1636.275 kb on - strand, within MPMX20_01558at 1636.283 kb on + strand, within MPMX20_01558at 1636.291 kb on - strand, within MPMX20_01558at 1636.297 kb on - strand, within MPMX20_01558at 1636.327 kb on + strand, within MPMX20_01558at 1636.364 kb on + strand, within MPMX20_01558at 1636.381 kb on - strand, within MPMX20_01558at 1636.384 kb on + strand, within MPMX20_01558at 1636.440 kb on + strand, within MPMX20_01558at 1636.443 kb on - strand, within MPMX20_01558at 1636.477 kb on + strand, within MPMX20_01558at 1636.485 kb on - strand, within MPMX20_01558at 1636.487 kb on + strand, within MPMX20_01558at 1636.495 kb on - strand, within MPMX20_01558at 1636.495 kb on - strand, within MPMX20_01558at 1636.515 kb on - strand, within MPMX20_01558at 1636.516 kb on + strand, within MPMX20_01558at 1636.518 kb on - strand, within MPMX20_01558at 1636.546 kb on + strand, within MPMX20_01558at 1636.567 kb on + strand, within MPMX20_01558at 1636.615 kb on - strand, within MPMX20_01558at 1636.617 kb on + strand, within MPMX20_01558at 1636.625 kb on - strand, within MPMX20_01558at 1636.625 kb on - strand, within MPMX20_01558at 1636.633 kb on + strand, within MPMX20_01558at 1636.788 kb on - strand, within MPMX20_01558at 1636.795 kb on - strand, within MPMX20_01558at 1636.883 kb on - strand, within MPMX20_01558at 1636.884 kb on + strand, within MPMX20_01558at 1636.892 kb on - strand, within MPMX20_01558at 1636.957 kb on - strandat 1636.959 kb on + strandat 1636.959 kb on + strandat 1636.959 kb on + strandat 1636.959 kb on + strandat 1636.959 kb on + strandat 1636.959 kb on + strandat 1636.967 kb on - strandat 1636.967 kb on - strandat 1636.975 kb on - strandat 1636.984 kb on + strandat 1636.984 kb on + strandat 1636.985 kb on + strandat 1636.985 kb on - strandat 1636.990 kb on + strandat 1636.992 kb on - strandat 1636.997 kb on + strandat 1637.004 kb on + strandat 1637.020 kb on + strandat 1637.025 kb on + strandat 1637.027 kb on - strandat 1637.027 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction butyrate (N)
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1,634,645 + MPMX20_01556 0.64 -0.8
1,634,650 + MPMX20_01556 0.65 -1.0
1,634,658 - MPMX20_01556 0.65 -2.0
1,634,661 + MPMX20_01556 0.65 -0.0
1,634,661 + MPMX20_01556 0.65 -1.5
1,634,669 - MPMX20_01556 0.65 +1.1
1,634,775 + MPMX20_01556 0.70 +0.4
1,634,775 + MPMX20_01556 0.70 +0.2
1,634,783 - MPMX20_01556 0.70 +1.1
1,634,837 + MPMX20_01556 0.72 +0.1
1,634,927 - MPMX20_01556 0.76 -1.2
1,634,956 + MPMX20_01556 0.77 -3.1
1,634,964 - MPMX20_01556 0.78 -2.1
1,634,995 + MPMX20_01556 0.79 +0.3
1,634,995 + MPMX20_01556 0.79 +0.8
1,635,177 - MPMX20_01556 0.86 +1.1
1,635,191 + MPMX20_01556 0.87 +0.6
1,635,191 + MPMX20_01556 0.87 -1.2
1,635,199 - MPMX20_01556 0.87 +0.1
1,635,199 - MPMX20_01556 0.87 -0.1
1,635,199 - MPMX20_01556 0.87 +0.5
1,635,219 - MPMX20_01556 0.88 +0.9
1,635,305 - +1.1
1,635,330 - +1.4
1,635,333 + -1.7
1,635,370 + +0.4
1,635,405 + +1.9
1,635,460 + +2.8
1,635,513 - -2.3
1,635,513 - +1.0
1,636,100 + -1.2
1,636,141 - -0.5
1,636,202 - -0.2
1,636,216 - +0.5
1,636,233 + MPMX20_01558 0.11 +0.4
1,636,233 + MPMX20_01558 0.11 -0.2
1,636,241 - MPMX20_01558 0.12 -1.3
1,636,273 + MPMX20_01558 0.15 -1.0
1,636,275 - MPMX20_01558 0.16 +1.0
1,636,283 + MPMX20_01558 0.16 -3.8
1,636,291 - MPMX20_01558 0.17 +0.5
1,636,297 - MPMX20_01558 0.18 +0.5
1,636,327 + MPMX20_01558 0.22 -1.5
1,636,364 + MPMX20_01558 0.26 -2.8
1,636,381 - MPMX20_01558 0.28 +0.7
1,636,384 + MPMX20_01558 0.28 +0.8
1,636,440 + MPMX20_01558 0.35 +0.8
1,636,443 - MPMX20_01558 0.35 -3.2
1,636,477 + MPMX20_01558 0.39 +1.0
1,636,485 - MPMX20_01558 0.40 -1.9
1,636,487 + MPMX20_01558 0.40 -0.5
1,636,495 - MPMX20_01558 0.41 +0.1
1,636,495 - MPMX20_01558 0.41 +0.1
1,636,515 - MPMX20_01558 0.43 -1.4
1,636,516 + MPMX20_01558 0.43 -1.4
1,636,518 - MPMX20_01558 0.44 +0.6
1,636,546 + MPMX20_01558 0.47 -0.2
1,636,567 + MPMX20_01558 0.49 +0.3
1,636,615 - MPMX20_01558 0.55 -2.1
1,636,617 + MPMX20_01558 0.55 +1.2
1,636,625 - MPMX20_01558 0.56 +1.1
1,636,625 - MPMX20_01558 0.56 +0.9
1,636,633 + MPMX20_01558 0.57 +1.8
1,636,788 - MPMX20_01558 0.75 -1.6
1,636,795 - MPMX20_01558 0.76 +0.1
1,636,883 - MPMX20_01558 0.86 +2.6
1,636,884 + MPMX20_01558 0.86 -0.6
1,636,892 - MPMX20_01558 0.87 +1.1
1,636,957 - +0.2
1,636,959 + -0.3
1,636,959 + -0.5
1,636,959 + +0.6
1,636,959 + +0.0
1,636,959 + -3.6
1,636,959 + +0.3
1,636,967 - -0.5
1,636,967 - -0.1
1,636,975 - +0.1
1,636,984 + -2.5
1,636,984 + +0.7
1,636,985 + -1.1
1,636,985 - +0.5
1,636,990 + +0.7
1,636,992 - +0.5
1,636,997 + +0.0
1,637,004 + +0.8
1,637,020 + +3.7
1,637,025 + -3.0
1,637,027 - -2.1
1,637,027 - -1.8

Or see this region's nucleotide sequence