Experiment: butyrate (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01556 and MPMX20_01557 are separated by 10 nucleotides MPMX20_01557 and MPMX20_01558 are separated by 1 nucleotides
MPMX20_01556: MPMX20_01556 - Dimethyl sulfoxide reductase DmsA, at 1,633,070 to 1,635,511
_01556
MPMX20_01557: MPMX20_01557 - Anaerobic dimethyl sulfoxide reductase chain B, at 1,635,522 to 1,636,139
_01557
MPMX20_01558: MPMX20_01558 - Anaerobic dimethyl sulfoxide reductase chain C, at 1,636,141 to 1,637,004
_01558
Position (kb)
1635
1636
1637 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 1634.645 kb on + strand, within MPMX20_01556 at 1634.650 kb on + strand, within MPMX20_01556 at 1634.658 kb on - strand, within MPMX20_01556 at 1634.661 kb on + strand, within MPMX20_01556 at 1634.661 kb on + strand, within MPMX20_01556 at 1634.669 kb on - strand, within MPMX20_01556 at 1634.775 kb on + strand, within MPMX20_01556 at 1634.775 kb on + strand, within MPMX20_01556 at 1634.783 kb on - strand, within MPMX20_01556 at 1634.837 kb on + strand, within MPMX20_01556 at 1634.927 kb on - strand, within MPMX20_01556 at 1634.956 kb on + strand, within MPMX20_01556 at 1634.964 kb on - strand, within MPMX20_01556 at 1634.995 kb on + strand, within MPMX20_01556 at 1634.995 kb on + strand, within MPMX20_01556 at 1635.177 kb on - strand, within MPMX20_01556 at 1635.191 kb on + strand, within MPMX20_01556 at 1635.191 kb on + strand, within MPMX20_01556 at 1635.199 kb on - strand, within MPMX20_01556 at 1635.199 kb on - strand, within MPMX20_01556 at 1635.199 kb on - strand, within MPMX20_01556 at 1635.219 kb on - strand, within MPMX20_01556 at 1635.305 kb on - strand at 1635.330 kb on - strand at 1635.333 kb on + strand at 1635.370 kb on + strand at 1635.405 kb on + strand at 1635.460 kb on + strand at 1635.513 kb on - strand at 1635.513 kb on - strand at 1636.100 kb on + strand at 1636.141 kb on - strand at 1636.202 kb on - strand at 1636.216 kb on - strand at 1636.233 kb on + strand, within MPMX20_01558 at 1636.233 kb on + strand, within MPMX20_01558 at 1636.241 kb on - strand, within MPMX20_01558 at 1636.273 kb on + strand, within MPMX20_01558 at 1636.275 kb on - strand, within MPMX20_01558 at 1636.283 kb on + strand, within MPMX20_01558 at 1636.291 kb on - strand, within MPMX20_01558 at 1636.297 kb on - strand, within MPMX20_01558 at 1636.327 kb on + strand, within MPMX20_01558 at 1636.364 kb on + strand, within MPMX20_01558 at 1636.381 kb on - strand, within MPMX20_01558 at 1636.384 kb on + strand, within MPMX20_01558 at 1636.440 kb on + strand, within MPMX20_01558 at 1636.443 kb on - strand, within MPMX20_01558 at 1636.477 kb on + strand, within MPMX20_01558 at 1636.485 kb on - strand, within MPMX20_01558 at 1636.487 kb on + strand, within MPMX20_01558 at 1636.495 kb on - strand, within MPMX20_01558 at 1636.495 kb on - strand, within MPMX20_01558 at 1636.515 kb on - strand, within MPMX20_01558 at 1636.516 kb on + strand, within MPMX20_01558 at 1636.518 kb on - strand, within MPMX20_01558 at 1636.546 kb on + strand, within MPMX20_01558 at 1636.567 kb on + strand, within MPMX20_01558 at 1636.615 kb on - strand, within MPMX20_01558 at 1636.617 kb on + strand, within MPMX20_01558 at 1636.625 kb on - strand, within MPMX20_01558 at 1636.625 kb on - strand, within MPMX20_01558 at 1636.633 kb on + strand, within MPMX20_01558 at 1636.788 kb on - strand, within MPMX20_01558 at 1636.795 kb on - strand, within MPMX20_01558 at 1636.883 kb on - strand, within MPMX20_01558 at 1636.884 kb on + strand, within MPMX20_01558 at 1636.892 kb on - strand, within MPMX20_01558 at 1636.957 kb on - strand at 1636.959 kb on + strand at 1636.959 kb on + strand at 1636.959 kb on + strand at 1636.959 kb on + strand at 1636.959 kb on + strand at 1636.959 kb on + strand at 1636.967 kb on - strand at 1636.967 kb on - strand at 1636.975 kb on - strand at 1636.984 kb on + strand at 1636.984 kb on + strand at 1636.985 kb on + strand at 1636.985 kb on - strand at 1636.990 kb on + strand at 1636.992 kb on - strand at 1636.997 kb on + strand at 1637.004 kb on + strand at 1637.020 kb on + strand at 1637.025 kb on + strand at 1637.027 kb on - strand at 1637.027 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (N) remove 1,634,645 + MPMX20_01556 0.64 -0.8 1,634,650 + MPMX20_01556 0.65 -1.0 1,634,658 - MPMX20_01556 0.65 -2.0 1,634,661 + MPMX20_01556 0.65 -0.0 1,634,661 + MPMX20_01556 0.65 -1.5 1,634,669 - MPMX20_01556 0.65 +1.1 1,634,775 + MPMX20_01556 0.70 +0.4 1,634,775 + MPMX20_01556 0.70 +0.2 1,634,783 - MPMX20_01556 0.70 +1.1 1,634,837 + MPMX20_01556 0.72 +0.1 1,634,927 - MPMX20_01556 0.76 -1.2 1,634,956 + MPMX20_01556 0.77 -3.1 1,634,964 - MPMX20_01556 0.78 -2.1 1,634,995 + MPMX20_01556 0.79 +0.3 1,634,995 + MPMX20_01556 0.79 +0.8 1,635,177 - MPMX20_01556 0.86 +1.1 1,635,191 + MPMX20_01556 0.87 +0.6 1,635,191 + MPMX20_01556 0.87 -1.2 1,635,199 - MPMX20_01556 0.87 +0.1 1,635,199 - MPMX20_01556 0.87 -0.1 1,635,199 - MPMX20_01556 0.87 +0.5 1,635,219 - MPMX20_01556 0.88 +0.9 1,635,305 - +1.1 1,635,330 - +1.4 1,635,333 + -1.7 1,635,370 + +0.4 1,635,405 + +1.9 1,635,460 + +2.8 1,635,513 - -2.3 1,635,513 - +1.0 1,636,100 + -1.2 1,636,141 - -0.5 1,636,202 - -0.2 1,636,216 - +0.5 1,636,233 + MPMX20_01558 0.11 +0.4 1,636,233 + MPMX20_01558 0.11 -0.2 1,636,241 - MPMX20_01558 0.12 -1.3 1,636,273 + MPMX20_01558 0.15 -1.0 1,636,275 - MPMX20_01558 0.16 +1.0 1,636,283 + MPMX20_01558 0.16 -3.8 1,636,291 - MPMX20_01558 0.17 +0.5 1,636,297 - MPMX20_01558 0.18 +0.5 1,636,327 + MPMX20_01558 0.22 -1.5 1,636,364 + MPMX20_01558 0.26 -2.8 1,636,381 - MPMX20_01558 0.28 +0.7 1,636,384 + MPMX20_01558 0.28 +0.8 1,636,440 + MPMX20_01558 0.35 +0.8 1,636,443 - MPMX20_01558 0.35 -3.2 1,636,477 + MPMX20_01558 0.39 +1.0 1,636,485 - MPMX20_01558 0.40 -1.9 1,636,487 + MPMX20_01558 0.40 -0.5 1,636,495 - MPMX20_01558 0.41 +0.1 1,636,495 - MPMX20_01558 0.41 +0.1 1,636,515 - MPMX20_01558 0.43 -1.4 1,636,516 + MPMX20_01558 0.43 -1.4 1,636,518 - MPMX20_01558 0.44 +0.6 1,636,546 + MPMX20_01558 0.47 -0.2 1,636,567 + MPMX20_01558 0.49 +0.3 1,636,615 - MPMX20_01558 0.55 -2.1 1,636,617 + MPMX20_01558 0.55 +1.2 1,636,625 - MPMX20_01558 0.56 +1.1 1,636,625 - MPMX20_01558 0.56 +0.9 1,636,633 + MPMX20_01558 0.57 +1.8 1,636,788 - MPMX20_01558 0.75 -1.6 1,636,795 - MPMX20_01558 0.76 +0.1 1,636,883 - MPMX20_01558 0.86 +2.6 1,636,884 + MPMX20_01558 0.86 -0.6 1,636,892 - MPMX20_01558 0.87 +1.1 1,636,957 - +0.2 1,636,959 + -0.3 1,636,959 + -0.5 1,636,959 + +0.6 1,636,959 + +0.0 1,636,959 + -3.6 1,636,959 + +0.3 1,636,967 - -0.5 1,636,967 - -0.1 1,636,975 - +0.1 1,636,984 + -2.5 1,636,984 + +0.7 1,636,985 + -1.1 1,636,985 - +0.5 1,636,990 + +0.7 1,636,992 - +0.5 1,636,997 + +0.0 1,637,004 + +0.8 1,637,020 + +3.7 1,637,025 + -3.0 1,637,027 - -2.1 1,637,027 - -1.8
Or see this region's nucleotide sequence