Experiment: butyrate (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01554 and MPMX20_01555 are separated by 92 nucleotides MPMX20_01555 and MPMX20_01556 are separated by 211 nucleotides
MPMX20_01554: MPMX20_01554 - Replication-associated recombination protein A, at 1,630,130 to 1,631,473
_01554
MPMX20_01555: MPMX20_01555 - Serine--tRNA ligase, at 1,631,566 to 1,632,858
_01555
MPMX20_01556: MPMX20_01556 - Dimethyl sulfoxide reductase DmsA, at 1,633,070 to 1,635,511
_01556
Position (kb)
1631
1632
1633 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1630.596 kb on - strand, within MPMX20_01554 at 1630.601 kb on + strand, within MPMX20_01554 at 1630.601 kb on + strand, within MPMX20_01554 at 1630.610 kb on - strand, within MPMX20_01554 at 1630.680 kb on + strand, within MPMX20_01554 at 1630.713 kb on - strand, within MPMX20_01554 at 1630.713 kb on - strand, within MPMX20_01554 at 1630.738 kb on + strand, within MPMX20_01554 at 1630.738 kb on + strand, within MPMX20_01554 at 1630.738 kb on + strand, within MPMX20_01554 at 1630.746 kb on - strand, within MPMX20_01554 at 1630.746 kb on - strand, within MPMX20_01554 at 1630.746 kb on - strand, within MPMX20_01554 at 1630.797 kb on + strand, within MPMX20_01554 at 1630.848 kb on - strand, within MPMX20_01554 at 1630.884 kb on - strand, within MPMX20_01554 at 1630.911 kb on - strand, within MPMX20_01554 at 1630.915 kb on + strand, within MPMX20_01554 at 1630.915 kb on + strand, within MPMX20_01554 at 1630.915 kb on + strand, within MPMX20_01554 at 1630.915 kb on + strand, within MPMX20_01554 at 1630.915 kb on + strand, within MPMX20_01554 at 1630.923 kb on - strand, within MPMX20_01554 at 1630.923 kb on - strand, within MPMX20_01554 at 1630.923 kb on - strand, within MPMX20_01554 at 1630.923 kb on - strand, within MPMX20_01554 at 1630.923 kb on - strand, within MPMX20_01554 at 1630.923 kb on - strand, within MPMX20_01554 at 1631.001 kb on - strand, within MPMX20_01554 at 1631.096 kb on - strand, within MPMX20_01554 at 1631.240 kb on + strand, within MPMX20_01554 at 1631.266 kb on + strand, within MPMX20_01554 at 1631.288 kb on - strand, within MPMX20_01554 at 1631.467 kb on + strand at 1632.913 kb on - strand at 1632.945 kb on - strand at 1633.062 kb on - strand at 1633.068 kb on - strand at 1633.091 kb on + strand at 1633.101 kb on - strand at 1633.149 kb on + strand at 1633.170 kb on + strand at 1633.180 kb on + strand at 1633.211 kb on + strand at 1633.212 kb on - strand at 1633.216 kb on + strand at 1633.216 kb on + strand at 1633.216 kb on + strand at 1633.216 kb on + strand at 1633.224 kb on - strand at 1633.224 kb on - strand at 1633.264 kb on + strand at 1633.264 kb on - strand at 1633.285 kb on + strand at 1633.293 kb on - strand at 1633.342 kb on + strand, within MPMX20_01556 at 1633.361 kb on + strand, within MPMX20_01556 at 1633.361 kb on + strand, within MPMX20_01556 at 1633.363 kb on - strand, within MPMX20_01556 at 1633.363 kb on - strand, within MPMX20_01556 at 1633.364 kb on - strand, within MPMX20_01556 at 1633.369 kb on - strand, within MPMX20_01556 at 1633.369 kb on - strand, within MPMX20_01556 at 1633.386 kb on + strand, within MPMX20_01556 at 1633.443 kb on - strand, within MPMX20_01556 at 1633.470 kb on - strand, within MPMX20_01556 at 1633.481 kb on + strand, within MPMX20_01556 at 1633.501 kb on - strand, within MPMX20_01556 at 1633.671 kb on - strand, within MPMX20_01556 at 1633.700 kb on + strand, within MPMX20_01556 at 1633.700 kb on + strand, within MPMX20_01556 at 1633.700 kb on + strand, within MPMX20_01556 at 1633.700 kb on + strand, within MPMX20_01556 at 1633.708 kb on - strand, within MPMX20_01556 at 1633.708 kb on - strand, within MPMX20_01556 at 1633.713 kb on - strand, within MPMX20_01556 at 1633.730 kb on + strand, within MPMX20_01556 at 1633.738 kb on - strand, within MPMX20_01556 at 1633.738 kb on - strand, within MPMX20_01556 at 1633.759 kb on + strand, within MPMX20_01556 at 1633.767 kb on - strand, within MPMX20_01556 at 1633.767 kb on - strand, within MPMX20_01556 at 1633.818 kb on + strand, within MPMX20_01556 at 1633.825 kb on + strand, within MPMX20_01556 at 1633.826 kb on - strand, within MPMX20_01556 at 1633.831 kb on - strand, within MPMX20_01556
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (N) remove 1,630,596 - MPMX20_01554 0.35 +0.1 1,630,601 + MPMX20_01554 0.35 -2.3 1,630,601 + MPMX20_01554 0.35 +0.9 1,630,610 - MPMX20_01554 0.36 +0.9 1,630,680 + MPMX20_01554 0.41 -2.9 1,630,713 - MPMX20_01554 0.43 -0.6 1,630,713 - MPMX20_01554 0.43 +0.5 1,630,738 + MPMX20_01554 0.45 -0.9 1,630,738 + MPMX20_01554 0.45 -3.6 1,630,738 + MPMX20_01554 0.45 -0.8 1,630,746 - MPMX20_01554 0.46 +2.8 1,630,746 - MPMX20_01554 0.46 -3.0 1,630,746 - MPMX20_01554 0.46 -1.1 1,630,797 + MPMX20_01554 0.50 +1.0 1,630,848 - MPMX20_01554 0.53 +1.2 1,630,884 - MPMX20_01554 0.56 -2.7 1,630,911 - MPMX20_01554 0.58 -2.4 1,630,915 + MPMX20_01554 0.58 -0.9 1,630,915 + MPMX20_01554 0.58 -1.4 1,630,915 + MPMX20_01554 0.58 -1.2 1,630,915 + MPMX20_01554 0.58 -2.3 1,630,915 + MPMX20_01554 0.58 +0.2 1,630,923 - MPMX20_01554 0.59 +0.1 1,630,923 - MPMX20_01554 0.59 +0.0 1,630,923 - MPMX20_01554 0.59 -3.5 1,630,923 - MPMX20_01554 0.59 -0.4 1,630,923 - MPMX20_01554 0.59 -1.4 1,630,923 - MPMX20_01554 0.59 -0.9 1,631,001 - MPMX20_01554 0.65 +1.2 1,631,096 - MPMX20_01554 0.72 -3.7 1,631,240 + MPMX20_01554 0.83 -2.1 1,631,266 + MPMX20_01554 0.85 -1.0 1,631,288 - MPMX20_01554 0.86 +0.6 1,631,467 + +1.3 1,632,913 - +0.8 1,632,945 - -0.5 1,633,062 - +0.5 1,633,068 - +1.1 1,633,091 + -3.3 1,633,101 - +2.5 1,633,149 + +0.4 1,633,170 + -1.2 1,633,180 + -0.5 1,633,211 + -0.3 1,633,212 - -1.7 1,633,216 + -0.3 1,633,216 + +1.0 1,633,216 + +1.1 1,633,216 + -0.5 1,633,224 - -0.6 1,633,224 - +0.9 1,633,264 + +1.5 1,633,264 - -2.1 1,633,285 + -1.4 1,633,293 - -3.0 1,633,342 + MPMX20_01556 0.11 -1.0 1,633,361 + MPMX20_01556 0.12 +1.7 1,633,361 + MPMX20_01556 0.12 -0.7 1,633,363 - MPMX20_01556 0.12 +1.2 1,633,363 - MPMX20_01556 0.12 +1.5 1,633,364 - MPMX20_01556 0.12 -0.8 1,633,369 - MPMX20_01556 0.12 -1.2 1,633,369 - MPMX20_01556 0.12 -0.2 1,633,386 + MPMX20_01556 0.13 +1.2 1,633,443 - MPMX20_01556 0.15 -1.4 1,633,470 - MPMX20_01556 0.16 -2.1 1,633,481 + MPMX20_01556 0.17 +0.1 1,633,501 - MPMX20_01556 0.18 -0.7 1,633,671 - MPMX20_01556 0.25 +1.4 1,633,700 + MPMX20_01556 0.26 +0.8 1,633,700 + MPMX20_01556 0.26 -0.5 1,633,700 + MPMX20_01556 0.26 -0.3 1,633,700 + MPMX20_01556 0.26 -0.3 1,633,708 - MPMX20_01556 0.26 +0.1 1,633,708 - MPMX20_01556 0.26 -1.2 1,633,713 - MPMX20_01556 0.26 -2.1 1,633,730 + MPMX20_01556 0.27 -2.8 1,633,738 - MPMX20_01556 0.27 +1.0 1,633,738 - MPMX20_01556 0.27 +2.4 1,633,759 + MPMX20_01556 0.28 -1.2 1,633,767 - MPMX20_01556 0.29 -3.0 1,633,767 - MPMX20_01556 0.29 +2.1 1,633,818 + MPMX20_01556 0.31 +0.4 1,633,825 + MPMX20_01556 0.31 -2.6 1,633,826 - MPMX20_01556 0.31 -0.7 1,633,831 - MPMX20_01556 0.31 +0.3
Or see this region's nucleotide sequence