Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01555

Experiment: butyrate (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01554 and MPMX20_01555 are separated by 92 nucleotidesMPMX20_01555 and MPMX20_01556 are separated by 211 nucleotides MPMX20_01554: MPMX20_01554 - Replication-associated recombination protein A, at 1,630,130 to 1,631,473 _01554 MPMX20_01555: MPMX20_01555 - Serine--tRNA ligase, at 1,631,566 to 1,632,858 _01555 MPMX20_01556: MPMX20_01556 - Dimethyl sulfoxide reductase DmsA, at 1,633,070 to 1,635,511 _01556 Position (kb) 1631 1632 1633Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1630.596 kb on - strand, within MPMX20_01554at 1630.601 kb on + strand, within MPMX20_01554at 1630.601 kb on + strand, within MPMX20_01554at 1630.610 kb on - strand, within MPMX20_01554at 1630.680 kb on + strand, within MPMX20_01554at 1630.713 kb on - strand, within MPMX20_01554at 1630.713 kb on - strand, within MPMX20_01554at 1630.738 kb on + strand, within MPMX20_01554at 1630.738 kb on + strand, within MPMX20_01554at 1630.738 kb on + strand, within MPMX20_01554at 1630.746 kb on - strand, within MPMX20_01554at 1630.746 kb on - strand, within MPMX20_01554at 1630.746 kb on - strand, within MPMX20_01554at 1630.797 kb on + strand, within MPMX20_01554at 1630.848 kb on - strand, within MPMX20_01554at 1630.884 kb on - strand, within MPMX20_01554at 1630.911 kb on - strand, within MPMX20_01554at 1630.915 kb on + strand, within MPMX20_01554at 1630.915 kb on + strand, within MPMX20_01554at 1630.915 kb on + strand, within MPMX20_01554at 1630.915 kb on + strand, within MPMX20_01554at 1630.915 kb on + strand, within MPMX20_01554at 1630.923 kb on - strand, within MPMX20_01554at 1630.923 kb on - strand, within MPMX20_01554at 1630.923 kb on - strand, within MPMX20_01554at 1630.923 kb on - strand, within MPMX20_01554at 1630.923 kb on - strand, within MPMX20_01554at 1630.923 kb on - strand, within MPMX20_01554at 1631.001 kb on - strand, within MPMX20_01554at 1631.096 kb on - strand, within MPMX20_01554at 1631.240 kb on + strand, within MPMX20_01554at 1631.266 kb on + strand, within MPMX20_01554at 1631.288 kb on - strand, within MPMX20_01554at 1631.467 kb on + strandat 1632.913 kb on - strandat 1632.945 kb on - strandat 1633.062 kb on - strandat 1633.068 kb on - strandat 1633.091 kb on + strandat 1633.101 kb on - strandat 1633.149 kb on + strandat 1633.170 kb on + strandat 1633.180 kb on + strandat 1633.211 kb on + strandat 1633.212 kb on - strandat 1633.216 kb on + strandat 1633.216 kb on + strandat 1633.216 kb on + strandat 1633.216 kb on + strandat 1633.224 kb on - strandat 1633.224 kb on - strandat 1633.264 kb on + strandat 1633.264 kb on - strandat 1633.285 kb on + strandat 1633.293 kb on - strandat 1633.342 kb on + strand, within MPMX20_01556at 1633.361 kb on + strand, within MPMX20_01556at 1633.361 kb on + strand, within MPMX20_01556at 1633.363 kb on - strand, within MPMX20_01556at 1633.363 kb on - strand, within MPMX20_01556at 1633.364 kb on - strand, within MPMX20_01556at 1633.369 kb on - strand, within MPMX20_01556at 1633.369 kb on - strand, within MPMX20_01556at 1633.386 kb on + strand, within MPMX20_01556at 1633.443 kb on - strand, within MPMX20_01556at 1633.470 kb on - strand, within MPMX20_01556at 1633.481 kb on + strand, within MPMX20_01556at 1633.501 kb on - strand, within MPMX20_01556at 1633.671 kb on - strand, within MPMX20_01556at 1633.700 kb on + strand, within MPMX20_01556at 1633.700 kb on + strand, within MPMX20_01556at 1633.700 kb on + strand, within MPMX20_01556at 1633.700 kb on + strand, within MPMX20_01556at 1633.708 kb on - strand, within MPMX20_01556at 1633.708 kb on - strand, within MPMX20_01556at 1633.713 kb on - strand, within MPMX20_01556at 1633.730 kb on + strand, within MPMX20_01556at 1633.738 kb on - strand, within MPMX20_01556at 1633.738 kb on - strand, within MPMX20_01556at 1633.759 kb on + strand, within MPMX20_01556at 1633.767 kb on - strand, within MPMX20_01556at 1633.767 kb on - strand, within MPMX20_01556at 1633.818 kb on + strand, within MPMX20_01556at 1633.825 kb on + strand, within MPMX20_01556at 1633.826 kb on - strand, within MPMX20_01556at 1633.831 kb on - strand, within MPMX20_01556

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Per-strain Table

Position Strand Gene LocusTag Fraction butyrate (N)
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1,630,596 - MPMX20_01554 0.35 +0.1
1,630,601 + MPMX20_01554 0.35 -2.3
1,630,601 + MPMX20_01554 0.35 +0.9
1,630,610 - MPMX20_01554 0.36 +0.9
1,630,680 + MPMX20_01554 0.41 -2.9
1,630,713 - MPMX20_01554 0.43 -0.6
1,630,713 - MPMX20_01554 0.43 +0.5
1,630,738 + MPMX20_01554 0.45 -0.9
1,630,738 + MPMX20_01554 0.45 -3.6
1,630,738 + MPMX20_01554 0.45 -0.8
1,630,746 - MPMX20_01554 0.46 +2.8
1,630,746 - MPMX20_01554 0.46 -3.0
1,630,746 - MPMX20_01554 0.46 -1.1
1,630,797 + MPMX20_01554 0.50 +1.0
1,630,848 - MPMX20_01554 0.53 +1.2
1,630,884 - MPMX20_01554 0.56 -2.7
1,630,911 - MPMX20_01554 0.58 -2.4
1,630,915 + MPMX20_01554 0.58 -0.9
1,630,915 + MPMX20_01554 0.58 -1.4
1,630,915 + MPMX20_01554 0.58 -1.2
1,630,915 + MPMX20_01554 0.58 -2.3
1,630,915 + MPMX20_01554 0.58 +0.2
1,630,923 - MPMX20_01554 0.59 +0.1
1,630,923 - MPMX20_01554 0.59 +0.0
1,630,923 - MPMX20_01554 0.59 -3.5
1,630,923 - MPMX20_01554 0.59 -0.4
1,630,923 - MPMX20_01554 0.59 -1.4
1,630,923 - MPMX20_01554 0.59 -0.9
1,631,001 - MPMX20_01554 0.65 +1.2
1,631,096 - MPMX20_01554 0.72 -3.7
1,631,240 + MPMX20_01554 0.83 -2.1
1,631,266 + MPMX20_01554 0.85 -1.0
1,631,288 - MPMX20_01554 0.86 +0.6
1,631,467 + +1.3
1,632,913 - +0.8
1,632,945 - -0.5
1,633,062 - +0.5
1,633,068 - +1.1
1,633,091 + -3.3
1,633,101 - +2.5
1,633,149 + +0.4
1,633,170 + -1.2
1,633,180 + -0.5
1,633,211 + -0.3
1,633,212 - -1.7
1,633,216 + -0.3
1,633,216 + +1.0
1,633,216 + +1.1
1,633,216 + -0.5
1,633,224 - -0.6
1,633,224 - +0.9
1,633,264 + +1.5
1,633,264 - -2.1
1,633,285 + -1.4
1,633,293 - -3.0
1,633,342 + MPMX20_01556 0.11 -1.0
1,633,361 + MPMX20_01556 0.12 +1.7
1,633,361 + MPMX20_01556 0.12 -0.7
1,633,363 - MPMX20_01556 0.12 +1.2
1,633,363 - MPMX20_01556 0.12 +1.5
1,633,364 - MPMX20_01556 0.12 -0.8
1,633,369 - MPMX20_01556 0.12 -1.2
1,633,369 - MPMX20_01556 0.12 -0.2
1,633,386 + MPMX20_01556 0.13 +1.2
1,633,443 - MPMX20_01556 0.15 -1.4
1,633,470 - MPMX20_01556 0.16 -2.1
1,633,481 + MPMX20_01556 0.17 +0.1
1,633,501 - MPMX20_01556 0.18 -0.7
1,633,671 - MPMX20_01556 0.25 +1.4
1,633,700 + MPMX20_01556 0.26 +0.8
1,633,700 + MPMX20_01556 0.26 -0.5
1,633,700 + MPMX20_01556 0.26 -0.3
1,633,700 + MPMX20_01556 0.26 -0.3
1,633,708 - MPMX20_01556 0.26 +0.1
1,633,708 - MPMX20_01556 0.26 -1.2
1,633,713 - MPMX20_01556 0.26 -2.1
1,633,730 + MPMX20_01556 0.27 -2.8
1,633,738 - MPMX20_01556 0.27 +1.0
1,633,738 - MPMX20_01556 0.27 +2.4
1,633,759 + MPMX20_01556 0.28 -1.2
1,633,767 - MPMX20_01556 0.29 -3.0
1,633,767 - MPMX20_01556 0.29 +2.1
1,633,818 + MPMX20_01556 0.31 +0.4
1,633,825 + MPMX20_01556 0.31 -2.6
1,633,826 - MPMX20_01556 0.31 -0.7
1,633,831 - MPMX20_01556 0.31 +0.3

Or see this region's nucleotide sequence