Experiment: Ying_OrganicAcid7 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_19530 and IAI47_19535 overlap by 35 nucleotides IAI47_19535 and IAI47_19540 are separated by 380 nucleotides
IAI47_19530: IAI47_19530 - hypothetical protein, at 136,066 to 136,263
_19530
IAI47_19535: IAI47_19535 - DUF4113 domain-containing protein, at 136,229 to 136,480
_19535
IAI47_19540: IAI47_19540 - nitroreductase family protein, at 136,861 to 137,601
_19540
Position (kb) 136
137 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 135.108 kb on + strand at 135.298 kb on + strand at 135.314 kb on + strand at 135.314 kb on + strand at 135.317 kb on + strand at 135.317 kb on + strand at 135.337 kb on + strand at 135.338 kb on - strand at 135.338 kb on - strand at 135.427 kb on + strand at 135.427 kb on + strand at 135.427 kb on + strand at 135.427 kb on + strand at 135.428 kb on - strand at 135.428 kb on - strand at 135.428 kb on - strand at 135.428 kb on - strand at 135.434 kb on + strand at 135.434 kb on + strand at 135.435 kb on - strand at 135.435 kb on - strand at 135.435 kb on - strand at 135.455 kb on + strand at 135.489 kb on + strand at 135.490 kb on - strand at 135.490 kb on - strand at 135.535 kb on + strand at 135.536 kb on - strand at 135.546 kb on + strand at 135.567 kb on - strand at 135.567 kb on - strand at 135.605 kb on - strand at 135.610 kb on - strand at 135.639 kb on + strand at 135.640 kb on - strand at 135.647 kb on + strand at 135.648 kb on - strand at 135.650 kb on + strand at 135.667 kb on + strand at 135.672 kb on - strand at 135.672 kb on - strand at 135.672 kb on - strand at 135.687 kb on + strand at 135.688 kb on - strand at 135.688 kb on - strand at 135.688 kb on - strand at 135.692 kb on - strand at 135.718 kb on + strand at 135.718 kb on + strand at 135.718 kb on + strand at 135.719 kb on - strand at 135.719 kb on - strand at 135.719 kb on - strand at 135.723 kb on + strand at 135.723 kb on + strand at 135.723 kb on + strand at 135.724 kb on - strand at 135.724 kb on - strand at 135.724 kb on - strand at 135.779 kb on + strand at 135.780 kb on - strand at 135.807 kb on + strand at 135.807 kb on + strand at 135.807 kb on + strand at 135.808 kb on - strand at 135.808 kb on - strand at 135.808 kb on - strand at 135.808 kb on - strand at 135.824 kb on - strand at 135.824 kb on - strand at 135.835 kb on + strand at 135.835 kb on + strand at 135.835 kb on + strand at 135.835 kb on + strand at 135.835 kb on + strand at 135.836 kb on - strand at 135.836 kb on - strand at 135.841 kb on + strand at 135.841 kb on + strand at 135.842 kb on - strand at 135.842 kb on - strand at 135.842 kb on - strand at 135.842 kb on - strand at 135.851 kb on - strand at 135.861 kb on - strand at 135.914 kb on - strand at 135.914 kb on - strand at 135.924 kb on + strand at 135.924 kb on + strand at 135.924 kb on + strand at 135.977 kb on + strand at 135.977 kb on + strand at 135.978 kb on - strand at 135.990 kb on + strand at 135.990 kb on + strand at 135.991 kb on - strand at 136.025 kb on + strand at 136.047 kb on - strand at 136.062 kb on + strand at 136.062 kb on + strand at 136.062 kb on + strand at 136.062 kb on + strand at 136.062 kb on + strand at 136.063 kb on - strand at 136.063 kb on - strand at 136.079 kb on - strand at 136.079 kb on - strand at 136.079 kb on - strand at 136.157 kb on + strand, within IAI47_19530 at 136.158 kb on - strand, within IAI47_19530 at 136.186 kb on + strand, within IAI47_19530 at 136.186 kb on + strand, within IAI47_19530 at 136.186 kb on + strand, within IAI47_19530 at 136.186 kb on + strand, within IAI47_19530 at 136.186 kb on + strand, within IAI47_19530 at 136.186 kb on + strand, within IAI47_19530 at 136.187 kb on - strand, within IAI47_19530 at 136.187 kb on - strand, within IAI47_19530 at 136.194 kb on + strand, within IAI47_19530 at 136.194 kb on + strand, within IAI47_19530 at 136.195 kb on - strand, within IAI47_19530 at 136.195 kb on - strand, within IAI47_19530 at 136.195 kb on - strand, within IAI47_19530 at 136.195 kb on - strand, within IAI47_19530 at 136.195 kb on - strand, within IAI47_19530 at 136.195 kb on - strand, within IAI47_19530 at 136.206 kb on + strand, within IAI47_19530 at 136.207 kb on - strand, within IAI47_19530 at 136.207 kb on - strand, within IAI47_19530 at 136.237 kb on + strand at 136.237 kb on + strand at 136.237 kb on + strand at 136.237 kb on + strand at 136.237 kb on + strand at 136.290 kb on + strand, within IAI47_19535 at 136.290 kb on + strand, within IAI47_19535 at 136.290 kb on + strand, within IAI47_19535 at 136.290 kb on + strand, within IAI47_19535 at 136.291 kb on - strand, within IAI47_19535 at 136.291 kb on - strand, within IAI47_19535 at 136.291 kb on - strand, within IAI47_19535 at 136.291 kb on - strand, within IAI47_19535 at 136.291 kb on - strand, within IAI47_19535 at 136.291 kb on - strand, within IAI47_19535 at 136.307 kb on + strand, within IAI47_19535 at 136.307 kb on + strand, within IAI47_19535 at 136.429 kb on + strand, within IAI47_19535 at 136.445 kb on + strand, within IAI47_19535 at 136.445 kb on + strand, within IAI47_19535 at 136.445 kb on + strand, within IAI47_19535 at 136.445 kb on + strand, within IAI47_19535 at 136.446 kb on - strand, within IAI47_19535 at 136.446 kb on - strand, within IAI47_19535 at 136.446 kb on - strand, within IAI47_19535 at 136.446 kb on - strand, within IAI47_19535 at 136.446 kb on - strand, within IAI47_19535 at 136.446 kb on - strand, within IAI47_19535 at 136.446 kb on - strand, within IAI47_19535 at 136.446 kb on - strand, within IAI47_19535 at 136.447 kb on + strand, within IAI47_19535 at 136.447 kb on + strand, within IAI47_19535 at 136.447 kb on + strand, within IAI47_19535 at 136.447 kb on + strand, within IAI47_19535 at 136.447 kb on + strand, within IAI47_19535 at 136.447 kb on + strand, within IAI47_19535 at 136.448 kb on - strand, within IAI47_19535 at 136.448 kb on - strand, within IAI47_19535 at 136.448 kb on - strand, within IAI47_19535 at 136.448 kb on - strand, within IAI47_19535 at 136.448 kb on - strand, within IAI47_19535 at 136.448 kb on - strand, within IAI47_19535 at 136.448 kb on - strand, within IAI47_19535 at 136.448 kb on - strand, within IAI47_19535 at 136.448 kb on - strand, within IAI47_19535 at 136.485 kb on + strand at 136.518 kb on + strand at 136.518 kb on + strand at 136.518 kb on + strand at 136.518 kb on + strand at 136.518 kb on + strand at 136.518 kb on + strand at 136.519 kb on - strand at 136.519 kb on - strand at 136.525 kb on + strand at 136.525 kb on + strand at 136.526 kb on - strand at 136.526 kb on - strand at 136.526 kb on - strand at 136.531 kb on - strand at 136.531 kb on - strand at 136.531 kb on - strand at 136.531 kb on - strand at 136.531 kb on - strand at 136.533 kb on + strand at 136.534 kb on - strand at 136.605 kb on + strand at 136.605 kb on + strand at 136.605 kb on + strand at 136.641 kb on + strand at 136.669 kb on - strand at 136.695 kb on + strand at 136.695 kb on + strand at 136.699 kb on + strand at 136.699 kb on + strand at 136.699 kb on + strand at 136.699 kb on + strand at 136.700 kb on - strand at 136.700 kb on - strand at 136.706 kb on + strand at 136.707 kb on - strand at 136.707 kb on - strand at 136.713 kb on + strand at 136.713 kb on + strand at 136.748 kb on + strand at 136.748 kb on + strand at 136.749 kb on - strand at 136.752 kb on + strand at 136.752 kb on + strand at 136.752 kb on + strand at 136.752 kb on + strand at 136.752 kb on + strand at 136.752 kb on + strand at 136.752 kb on + strand at 136.752 kb on + strand at 136.753 kb on - strand at 136.753 kb on - strand at 136.753 kb on - strand at 136.753 kb on - strand at 136.753 kb on - strand at 136.753 kb on - strand at 136.753 kb on - strand at 136.760 kb on + strand at 136.760 kb on + strand at 136.760 kb on + strand at 136.760 kb on + strand at 136.761 kb on - strand at 136.761 kb on - strand at 136.818 kb on + strand at 136.819 kb on - strand at 136.819 kb on - strand at 136.833 kb on + strand at 136.833 kb on + strand at 136.833 kb on + strand at 136.834 kb on - strand at 136.835 kb on + strand at 136.835 kb on + strand at 136.835 kb on + strand at 136.835 kb on + strand at 136.836 kb on - strand at 136.836 kb on - strand at 136.836 kb on - strand at 136.847 kb on - strand at 136.847 kb on - strand at 136.847 kb on - strand at 136.849 kb on - strand at 136.849 kb on - strand at 136.879 kb on - strand at 136.885 kb on - strand at 136.937 kb on + strand, within IAI47_19540 at 136.947 kb on + strand, within IAI47_19540 at 136.947 kb on + strand, within IAI47_19540 at 136.949 kb on + strand, within IAI47_19540 at 136.950 kb on - strand, within IAI47_19540 at 136.950 kb on - strand, within IAI47_19540 at 136.953 kb on + strand, within IAI47_19540 at 136.953 kb on + strand, within IAI47_19540 at 136.953 kb on + strand, within IAI47_19540 at 136.953 kb on + strand, within IAI47_19540 at 136.953 kb on + strand, within IAI47_19540 at 136.954 kb on - strand, within IAI47_19540 at 136.954 kb on - strand, within IAI47_19540 at 136.954 kb on - strand, within IAI47_19540 at 136.954 kb on - strand, within IAI47_19540 at 137.089 kb on - strand, within IAI47_19540 at 137.106 kb on + strand, within IAI47_19540 at 137.106 kb on + strand, within IAI47_19540 at 137.112 kb on + strand, within IAI47_19540 at 137.112 kb on + strand, within IAI47_19540 at 137.112 kb on + strand, within IAI47_19540 at 137.112 kb on + strand, within IAI47_19540 at 137.112 kb on + strand, within IAI47_19540 at 137.113 kb on - strand, within IAI47_19540 at 137.113 kb on - strand, within IAI47_19540 at 137.113 kb on - strand, within IAI47_19540 at 137.113 kb on - strand, within IAI47_19540 at 137.113 kb on - strand, within IAI47_19540 at 137.113 kb on - strand, within IAI47_19540 at 137.166 kb on + strand, within IAI47_19540 at 137.166 kb on + strand, within IAI47_19540 at 137.167 kb on - strand, within IAI47_19540 at 137.167 kb on - strand, within IAI47_19540 at 137.176 kb on - strand, within IAI47_19540
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 1 remove 135,108 + -0.8 135,298 + -1.5 135,314 + +0.1 135,314 + +1.2 135,317 + -0.2 135,317 + +0.5 135,337 + -0.6 135,338 - -0.6 135,338 - -1.5 135,427 + +0.8 135,427 + -0.0 135,427 + +0.1 135,427 + -2.0 135,428 - +0.2 135,428 - -0.3 135,428 - +1.8 135,428 - +0.1 135,434 + -0.2 135,434 + +1.6 135,435 - +0.3 135,435 - -0.1 135,435 - -0.2 135,455 + +0.4 135,489 + -0.9 135,490 - +0.2 135,490 - +0.5 135,535 + -1.2 135,536 - -0.2 135,546 + +2.4 135,567 - +0.8 135,567 - +0.6 135,605 - +0.1 135,610 - -0.6 135,639 + +0.8 135,640 - +0.6 135,647 + -1.8 135,648 - +0.3 135,650 + -0.3 135,667 + +1.7 135,672 - -0.2 135,672 - +0.4 135,672 - -0.8 135,687 + -0.8 135,688 - -0.8 135,688 - +1.3 135,688 - +0.8 135,692 - -1.3 135,718 + +0.1 135,718 + -0.8 135,718 + -2.2 135,719 - +1.1 135,719 - +0.4 135,719 - -0.2 135,723 + +0.3 135,723 + -0.5 135,723 + +0.1 135,724 - -0.6 135,724 - -0.1 135,724 - -1.8 135,779 + +1.4 135,780 - +0.2 135,807 + -0.6 135,807 + -2.6 135,807 + +0.6 135,808 - -0.4 135,808 - +0.6 135,808 - +0.8 135,808 - +0.2 135,824 - -0.2 135,824 - +0.2 135,835 + +0.5 135,835 + -0.2 135,835 + -0.0 135,835 + +0.5 135,835 + -0.3 135,836 - -0.6 135,836 - -0.2 135,841 + +0.5 135,841 + -1.6 135,842 - -0.5 135,842 - -1.6 135,842 - -0.3 135,842 - +1.1 135,851 - +0.4 135,861 - -0.5 135,914 - +0.8 135,914 - +2.2 135,924 + -0.9 135,924 + -0.4 135,924 + -0.8 135,977 + -0.3 135,977 + +0.7 135,978 - +0.4 135,990 + +1.8 135,990 + +0.4 135,991 - +0.4 136,025 + -2.3 136,047 - +0.0 136,062 + +0.2 136,062 + -1.0 136,062 + -0.2 136,062 + +1.2 136,062 + -0.2 136,063 - -0.7 136,063 - -0.6 136,079 - +0.6 136,079 - -1.2 136,079 - +0.6 136,157 + IAI47_19530 0.46 +0.1 136,158 - IAI47_19530 0.46 +1.0 136,186 + IAI47_19530 0.61 +0.4 136,186 + IAI47_19530 0.61 +1.1 136,186 + IAI47_19530 0.61 -0.2 136,186 + IAI47_19530 0.61 +0.2 136,186 + IAI47_19530 0.61 -0.8 136,186 + IAI47_19530 0.61 -0.3 136,187 - IAI47_19530 0.61 +0.2 136,187 - IAI47_19530 0.61 -1.0 136,194 + IAI47_19530 0.65 -0.2 136,194 + IAI47_19530 0.65 +0.2 136,195 - IAI47_19530 0.65 -0.5 136,195 - IAI47_19530 0.65 +0.1 136,195 - IAI47_19530 0.65 -0.3 136,195 - IAI47_19530 0.65 +0.6 136,195 - IAI47_19530 0.65 -0.5 136,195 - IAI47_19530 0.65 -0.4 136,206 + IAI47_19530 0.71 +0.2 136,207 - IAI47_19530 0.71 +0.8 136,207 - IAI47_19530 0.71 +1.1 136,237 + -0.2 136,237 + +0.1 136,237 + -0.1 136,237 + -0.3 136,237 + -0.2 136,290 + IAI47_19535 0.24 +0.1 136,290 + IAI47_19535 0.24 +0.8 136,290 + IAI47_19535 0.24 -0.2 136,290 + IAI47_19535 0.24 -0.2 136,291 - IAI47_19535 0.25 +0.8 136,291 - IAI47_19535 0.25 -0.1 136,291 - IAI47_19535 0.25 -0.4 136,291 - IAI47_19535 0.25 +1.0 136,291 - IAI47_19535 0.25 +0.0 136,291 - IAI47_19535 0.25 +0.0 136,307 + IAI47_19535 0.31 +0.2 136,307 + IAI47_19535 0.31 -1.9 136,429 + IAI47_19535 0.79 -1.5 136,445 + IAI47_19535 0.86 -2.5 136,445 + IAI47_19535 0.86 -0.1 136,445 + IAI47_19535 0.86 +0.4 136,445 + IAI47_19535 0.86 +0.3 136,446 - IAI47_19535 0.86 -0.8 136,446 - IAI47_19535 0.86 -2.0 136,446 - IAI47_19535 0.86 +2.1 136,446 - IAI47_19535 0.86 -1.1 136,446 - IAI47_19535 0.86 -0.0 136,446 - IAI47_19535 0.86 -0.6 136,446 - IAI47_19535 0.86 +1.8 136,446 - IAI47_19535 0.86 -0.4 136,447 + IAI47_19535 0.87 +1.3 136,447 + IAI47_19535 0.87 -0.3 136,447 + IAI47_19535 0.87 -0.8 136,447 + IAI47_19535 0.87 -1.6 136,447 + IAI47_19535 0.87 +1.2 136,447 + IAI47_19535 0.87 +0.8 136,448 - IAI47_19535 0.87 +1.0 136,448 - IAI47_19535 0.87 +1.8 136,448 - IAI47_19535 0.87 -0.2 136,448 - IAI47_19535 0.87 +0.8 136,448 - IAI47_19535 0.87 +0.8 136,448 - IAI47_19535 0.87 +1.1 136,448 - IAI47_19535 0.87 -0.2 136,448 - IAI47_19535 0.87 +0.1 136,448 - IAI47_19535 0.87 +0.5 136,485 + +0.3 136,518 + +3.2 136,518 + +0.2 136,518 + +0.1 136,518 + -0.6 136,518 + -0.4 136,518 + -0.1 136,519 - +0.2 136,519 - +1.2 136,525 + -0.8 136,525 + -1.6 136,526 - +1.4 136,526 - -0.9 136,526 - +0.8 136,531 - +0.8 136,531 - -0.3 136,531 - +0.5 136,531 - -0.0 136,531 - +0.5 136,533 + -0.7 136,534 - -1.8 136,605 + -0.2 136,605 + -0.5 136,605 + +0.3 136,641 + +0.7 136,669 - -0.8 136,695 + -0.8 136,695 + -0.2 136,699 + -0.7 136,699 + -0.8 136,699 + -0.3 136,699 + +0.3 136,700 - +0.4 136,700 - +0.5 136,706 + +0.2 136,707 - +0.4 136,707 - +0.2 136,713 + +0.5 136,713 + -0.8 136,748 + +0.7 136,748 + -0.2 136,749 - -1.0 136,752 + -2.9 136,752 + +0.2 136,752 + +0.8 136,752 + -0.2 136,752 + +0.8 136,752 + -0.6 136,752 + +1.2 136,752 + -0.2 136,753 - -0.9 136,753 - +1.8 136,753 - -0.2 136,753 - -1.0 136,753 - -1.5 136,753 - -1.1 136,753 - -0.6 136,760 + -0.9 136,760 + -0.2 136,760 + -1.8 136,760 + -0.8 136,761 - +0.8 136,761 - -0.4 136,818 + -1.3 136,819 - -0.2 136,819 - +1.0 136,833 + -1.5 136,833 + -0.7 136,833 + +0.5 136,834 - +0.7 136,835 + +0.1 136,835 + +1.2 136,835 + -0.5 136,835 + +0.8 136,836 - +0.3 136,836 - -0.6 136,836 - -0.9 136,847 - +2.2 136,847 - +0.7 136,847 - -0.4 136,849 - +1.3 136,849 - +0.4 136,879 - +1.5 136,885 - -0.2 136,937 + IAI47_19540 0.10 +0.2 136,947 + IAI47_19540 0.12 +0.1 136,947 + IAI47_19540 0.12 -0.2 136,949 + IAI47_19540 0.12 +0.6 136,950 - IAI47_19540 0.12 +1.8 136,950 - IAI47_19540 0.12 +0.1 136,953 + IAI47_19540 0.12 +1.2 136,953 + IAI47_19540 0.12 -0.5 136,953 + IAI47_19540 0.12 -0.6 136,953 + IAI47_19540 0.12 -1.0 136,953 + IAI47_19540 0.12 +0.2 136,954 - IAI47_19540 0.13 -0.2 136,954 - IAI47_19540 0.13 +0.8 136,954 - IAI47_19540 0.13 +0.1 136,954 - IAI47_19540 0.13 -0.2 137,089 - IAI47_19540 0.31 +1.0 137,106 + IAI47_19540 0.33 +0.3 137,106 + IAI47_19540 0.33 +1.2 137,112 + IAI47_19540 0.34 +2.4 137,112 + IAI47_19540 0.34 -0.6 137,112 + IAI47_19540 0.34 +0.2 137,112 + IAI47_19540 0.34 -0.2 137,112 + IAI47_19540 0.34 -2.9 137,113 - IAI47_19540 0.34 +1.2 137,113 - IAI47_19540 0.34 -0.1 137,113 - IAI47_19540 0.34 +0.1 137,113 - IAI47_19540 0.34 -1.0 137,113 - IAI47_19540 0.34 -0.1 137,113 - IAI47_19540 0.34 +0.8 137,166 + IAI47_19540 0.41 +0.2 137,166 + IAI47_19540 0.41 +0.8 137,167 - IAI47_19540 0.41 +0.2 137,167 - IAI47_19540 0.41 -0.5 137,176 - IAI47_19540 0.43 +0.1
Or see this region's nucleotide sequence