Strain Fitness in Pantoea sp. MT58 around IAI47_09220

Experiment: Ying_OrganicAcid7 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep A; time point 1
1,941,112	+		IAI47_09210	0.62	+1.4
1,941,112	+		IAI47_09210	0.62	-0.8
1,941,112	+		IAI47_09210	0.62	+0.0
1,941,112	+		IAI47_09210	0.62	-0.7
1,941,112	+		IAI47_09210	0.62	+0.0
1,941,113	-		IAI47_09210	0.62	-0.8
1,941,114	+		IAI47_09210	0.62	-1.0
1,941,114	+		IAI47_09210	0.62	-0.5
1,941,115	-		IAI47_09210	0.62	+0.8
1,941,115	-		IAI47_09210	0.62	-0.3
1,941,138	+		IAI47_09210	0.65	-2.5
1,941,138	+		IAI47_09210	0.65	-0.8
1,941,139	-		IAI47_09210	0.65	+0.2
1,941,149	+		IAI47_09210	0.66	-1.4
1,941,150	-		IAI47_09210	0.66	+1.5
1,941,150	-		IAI47_09210	0.66	-0.6
1,941,222	-		IAI47_09210	0.74	+0.8
1,941,277	+		IAI47_09210	0.80	-0.2
1,941,278	-		IAI47_09210	0.80	-0.7
1,941,278	-		IAI47_09210	0.80	+0.0
1,941,278	-		IAI47_09210	0.80	-0.2
1,941,285	+		IAI47_09210	0.81	-0.2
1,941,318	+		IAI47_09210	0.85	-1.8
1,941,318	+		IAI47_09210	0.85	-0.3
1,941,318	+		IAI47_09210	0.85	+0.2
1,941,348	+		IAI47_09210	0.88	+0.1
1,941,348	+		IAI47_09210	0.88	+2.3
1,941,349	-		IAI47_09210	0.88	+1.2
1,941,390	+				+0.5
1,941,390	+				+1.8
1,941,390	+				+0.4
1,941,390	+				-0.4
1,941,391	-				-0.2
1,941,441	+				+0.1
1,941,441	+				-0.6
1,941,441	+				+0.8
1,941,442	-				+0.2
1,941,442	-				-2.4
1,941,451	+				-0.8
1,941,454	+				+0.4
1,941,454	+				+1.5
1,941,454	+				-0.2
1,941,454	+				+0.2
1,941,454	+				-0.0
1,941,455	-				-0.8
1,941,455	-				+0.2
1,941,535	+				-0.6
1,941,535	+				+0.3
1,941,536	-				+0.1
1,941,536	-				-0.5
1,941,536	-				-0.4
1,941,536	-				-1.4
1,941,538	-				-2.2
1,941,538	-				+0.2
1,941,582	+		IAI47_09215	0.13	+0.5
1,941,582	+		IAI47_09215	0.13	-0.9
1,941,582	+		IAI47_09215	0.13	+0.5
1,941,583	-		IAI47_09215	0.13	-1.0
1,941,583	-		IAI47_09215	0.13	-1.3
1,941,627	+		IAI47_09215	0.20	-0.2
1,941,627	+		IAI47_09215	0.20	-0.2
1,941,689	+		IAI47_09215	0.31	+0.9
1,941,689	+		IAI47_09215	0.31	-0.2
1,941,689	+		IAI47_09215	0.31	+0.8
1,941,690	-		IAI47_09215	0.31	+0.7
1,941,705	+		IAI47_09215	0.33	-1.2
1,941,705	+		IAI47_09215	0.33	-1.0
1,941,705	+		IAI47_09215	0.33	-1.3
1,941,705	+		IAI47_09215	0.33	-1.3
1,941,705	+		IAI47_09215	0.33	+0.4
1,941,706	-		IAI47_09215	0.34	+0.9
1,941,706	-		IAI47_09215	0.34	+1.4
1,941,706	-		IAI47_09215	0.34	+0.4
1,941,706	-		IAI47_09215	0.34	-0.7
1,941,706	-		IAI47_09215	0.34	+0.8
1,941,707	+		IAI47_09215	0.34	+0.5
1,941,707	+		IAI47_09215	0.34	+1.9
1,941,707	+		IAI47_09215	0.34	+1.8
1,941,707	+		IAI47_09215	0.34	-0.3
1,941,707	+		IAI47_09215	0.34	-0.1
1,941,707	+		IAI47_09215	0.34	+0.2
1,941,707	+		IAI47_09215	0.34	-0.7
1,941,707	+		IAI47_09215	0.34	+0.4
1,941,707	+		IAI47_09215	0.34	-1.0
1,941,707	+		IAI47_09215	0.34	-2.4
1,941,708	-		IAI47_09215	0.34	-0.7
1,941,708	-		IAI47_09215	0.34	+1.3
1,941,708	-		IAI47_09215	0.34	+0.8
1,941,708	-		IAI47_09215	0.34	+0.6
1,941,708	-		IAI47_09215	0.34	+0.4
1,941,708	-		IAI47_09215	0.34	+0.4
1,941,708	-		IAI47_09215	0.34	-0.6
1,941,708	-		IAI47_09215	0.34	-0.5
1,941,825	+		IAI47_09215	0.54	-0.7
1,941,825	+		IAI47_09215	0.54	-0.2
1,941,903	+		IAI47_09215	0.67	+0.6
1,941,906	+		IAI47_09215	0.67	-1.5
1,941,906	+		IAI47_09215	0.67	-1.4
1,942,060	+				+1.1
1,942,060	+				+0.6
1,942,061	-				+0.4
1,942,181	-		IAI47_09220	0.11	+0.3
1,942,181	-		IAI47_09220	0.11	-0.1
1,942,186	+		IAI47_09220	0.12	+0.2
1,942,186	+		IAI47_09220	0.12	-0.1
1,942,186	+		IAI47_09220	0.12	+1.0
1,942,187	-		IAI47_09220	0.12	-0.2
1,942,220	+		IAI47_09220	0.16	+0.4
1,942,220	+		IAI47_09220	0.16	+0.4
1,942,221	-		IAI47_09220	0.16	+0.0
1,942,221	-		IAI47_09220	0.16	-2.0
1,942,221	-		IAI47_09220	0.16	+1.3
1,942,221	-		IAI47_09220	0.16	-1.0
1,942,221	-		IAI47_09220	0.16	+0.4
1,942,221	-		IAI47_09220	0.16	-0.9
1,942,221	-		IAI47_09220	0.16	-2.6
1,942,223	+		IAI47_09220	0.16	-0.1
1,942,223	+		IAI47_09220	0.16	+0.8
1,942,223	+		IAI47_09220	0.16	+0.2
1,942,223	+		IAI47_09220	0.16	-1.5
1,942,223	+		IAI47_09220	0.16	+0.8
1,942,223	+		IAI47_09220	0.16	-0.8
1,942,223	+		IAI47_09220	0.16	-0.3
1,942,223	+		IAI47_09220	0.16	+1.1
1,942,223	+		IAI47_09220	0.16	-0.9
1,942,223	+		IAI47_09220	0.16	-1.2
1,942,224	-		IAI47_09220	0.17	-1.3
1,942,224	-		IAI47_09220	0.17	+0.3
1,942,224	-		IAI47_09220	0.17	-0.2
1,942,224	-		IAI47_09220	0.17	-1.4
1,942,224	-		IAI47_09220	0.17	+0.8
1,942,284	-		IAI47_09220	0.24	-0.4
1,942,310	+		IAI47_09220	0.28	+1.2
1,942,310	+		IAI47_09220	0.28	-0.4
1,942,310	+		IAI47_09220	0.28	-0.2
1,942,310	+		IAI47_09220	0.28	-0.1
1,942,311	-		IAI47_09220	0.28	+0.8
1,942,311	-		IAI47_09220	0.28	+0.2
1,942,311	-		IAI47_09220	0.28	+0.2
1,942,311	-		IAI47_09220	0.28	+0.7
1,942,311	-		IAI47_09220	0.28	-0.3
1,942,311	-		IAI47_09220	0.28	+0.4
1,942,312	+		IAI47_09220	0.28	+0.8
1,942,312	+		IAI47_09220	0.28	+1.0
1,942,312	+		IAI47_09220	0.28	-2.8
1,942,312	+		IAI47_09220	0.28	+0.8
1,942,312	+		IAI47_09220	0.28	+1.1
1,942,313	-		IAI47_09220	0.28	+0.1
1,942,313	-				+1.1
1,942,313	-		IAI47_09220	0.28	-0.5
1,942,366	+		IAI47_09220	0.35	-0.8
1,942,413	-		IAI47_09220	0.41	+0.0
1,942,493	+		IAI47_09220	0.52	-0.4
1,942,493	+		IAI47_09220	0.52	-1.4
1,942,493	+		IAI47_09220	0.52	+0.6
1,942,493	+		IAI47_09220	0.52	-0.2
1,942,494	-		IAI47_09220	0.52	-0.5
1,942,494	-		IAI47_09220	0.52	+0.0
1,942,494	-		IAI47_09220	0.52	+0.2
1,942,494	-		IAI47_09220	0.52	+0.2
1,942,494	-		IAI47_09220	0.52	+1.2
1,942,682	+		IAI47_09220	0.77	-1.0
1,942,682	+		IAI47_09220	0.77	-0.4
1,942,683	-		IAI47_09220	0.77	-0.5
1,942,694	+		IAI47_09220	0.78	-0.3
1,942,695	-		IAI47_09220	0.78	-0.5
1,942,695	-		IAI47_09220	0.78	+0.1
1,942,718	+		IAI47_09220	0.81	+1.6
1,942,718	+		IAI47_09220	0.81	-0.2
1,942,719	-		IAI47_09220	0.81	-1.0
1,942,719	-		IAI47_09220	0.81	+0.8
1,942,719	-		IAI47_09220	0.81	+0.0
1,942,765	+		IAI47_09220	0.88	-0.0
1,942,765	+		IAI47_09220	0.88	+0.0
1,942,766	-		IAI47_09220	0.88	+0.1
1,942,790	+				+0.8
1,942,817	+				-1.7
1,942,817	+				+0.4
1,942,818	-				-1.2
1,942,820	+				-0.6
1,942,820	+				+0.5
1,942,821	-				-0.8
1,942,821	-				+0.6
1,942,821	-				-0.3
1,942,821	-				+0.3
1,942,821	-				+0.4
1,942,821	-				+0.8
1,942,852	+				-1.8
1,942,852	+				-1.5
1,942,853	-				-0.4
1,942,853	-				+1.2
1,942,897	+				+1.8
1,942,898	-				+0.4
1,943,017	+				-0.2
1,943,017	+				+1.1
1,943,017	+				+0.8
1,943,018	-				+0.0
1,943,018	-				-0.9
1,943,018	-				-0.4
1,943,021	+				+0.8
1,943,021	+				+0.7
1,943,021	+				-0.5
1,943,021	+				+0.0
1,943,021	+				+0.4
1,943,021	+				+0.7
1,943,022	-				-0.5
1,943,022	-				+0.5
1,943,022	-				-0.0
1,943,022	-				-0.1
1,943,051	+				-1.5
1,943,051	+				+0.5
1,943,051	+				+0.0
1,943,051	+				-0.3
1,943,051	+				-0.7
1,943,051	+				-0.5
1,943,051	+				-0.6
1,943,051	+				+0.3
1,943,051	+				-0.2
1,943,052	-				-0.5
1,943,052	-				+0.0
1,943,052	-				-0.1
1,943,113	+				-2.4
1,943,113	+				+0.2
1,943,113	+				+2.1
1,943,114	-				+0.4
1,943,114	-				-0.0
1,943,114	-				+0.1
1,943,114	-				+0.2
1,943,117	-				+0.6
1,943,117	-				-0.6
1,943,117	-				-0.1
1,943,183	+		IAI47_09225	0.14	-1.1
1,943,183	+		IAI47_09225	0.14	-1.2
1,943,184	-		IAI47_09225	0.14	-0.1
1,943,184	-		IAI47_09225	0.14	-0.2
1,943,184	-		IAI47_09225	0.14	-0.5
1,943,184	-		IAI47_09225	0.14	+0.2
1,943,184	-		IAI47_09225	0.14	+0.7
1,943,339	+		IAI47_09225	0.29	+0.8
1,943,339	+		IAI47_09225	0.29	-0.5
1,943,340	-		IAI47_09225	0.29	+1.9
1,943,340	-		IAI47_09225	0.29	-0.1
1,943,340	-		IAI47_09225	0.29	+0.4
1,943,340	-		IAI47_09225	0.29	+0.0
1,943,354	-		IAI47_09225	0.31	+0.4
1,943,354	-		IAI47_09225	0.31	-0.3
1,943,409	+		IAI47_09225	0.36	-0.0
1,943,409	+		IAI47_09225	0.36	+0.2
1,943,409	+		IAI47_09225	0.36	-0.6
1,943,418	+		IAI47_09225	0.37	-0.6
1,943,472	+		IAI47_09225	0.42	-1.4
1,943,472	+		IAI47_09225	0.42	-1.2
1,943,472	+		IAI47_09225	0.42	-1.5
1,943,472	+		IAI47_09225	0.42	-0.1
1,943,472	+		IAI47_09225	0.42	+1.2
1,943,473	-		IAI47_09225	0.42	-0.9
1,943,473	-		IAI47_09225	0.42	-0.2
1,943,530	+		IAI47_09225	0.47	-0.2
1,943,531	-		IAI47_09225	0.48	+1.8
1,943,531	-		IAI47_09225	0.48	-2.2
1,943,533	+		IAI47_09225	0.48	-0.7
1,943,533	+		IAI47_09225	0.48	-0.5
1,943,534	-		IAI47_09225	0.48	+0.3
1,943,548	+		IAI47_09225	0.49	+0.5
1,943,571	-		IAI47_09225	0.51	+0.4
1,943,571	-		IAI47_09225	0.51	+0.6
1,943,571	-		IAI47_09225	0.51	-0.6
1,943,571	-		IAI47_09225	0.51	+0.7
1,943,586	+		IAI47_09225	0.53	-0.0
1,943,586	+		IAI47_09225	0.53	+0.5
1,943,587	-		IAI47_09225	0.53	-0.2
1,943,587	-		IAI47_09225	0.53	-0.7
1,943,653	+		IAI47_09225	0.59	+1.1
1,943,653	+		IAI47_09225	0.59	-0.0
1,943,677	+		IAI47_09225	0.62	-0.1
1,943,677	+		IAI47_09225	0.62	-1.3
1,943,677	+		IAI47_09225	0.62	-0.4
1,943,678	-		IAI47_09225	0.62	+0.8
1,943,678	-		IAI47_09225	0.62	-0.3
1,943,678	-		IAI47_09225	0.62	+0.8
1,943,678	-		IAI47_09225	0.62	+0.4
1,943,678	-		IAI47_09225	0.62	+0.0
1,943,678	-		IAI47_09225	0.62	-0.8
1,943,678	-		IAI47_09225	0.62	-0.7
1,943,714	+		IAI47_09225	0.65	+0.2
1,943,714	+		IAI47_09225	0.65	-1.5
1,943,714	+		IAI47_09225	0.65	-1.1
1,943,714	+		IAI47_09225	0.65	+0.3
1,943,714	+		IAI47_09225	0.65	+1.2
1,943,715	-		IAI47_09225	0.65	-0.5
1,943,715	-		IAI47_09225	0.65	-0.8
1,943,716	+		IAI47_09225	0.65	-0.2
1,943,716	+		IAI47_09225	0.65	-0.9
1,943,716	+		IAI47_09225	0.65	+1.4
1,943,716	+		IAI47_09225	0.65	+0.5
1,943,716	+		IAI47_09225	0.65	+0.5
1,943,716	+		IAI47_09225	0.65	-0.2
1,943,717	-		IAI47_09225	0.65	-1.8
1,943,717	-		IAI47_09225	0.65	-0.1
1,943,717	-		IAI47_09225	0.65	+1.1
1,943,717	-		IAI47_09225	0.65	-1.0
1,943,717	-		IAI47_09225	0.65	+0.1
1,943,717	-		IAI47_09225	0.65	+0.5
1,943,717	-		IAI47_09225	0.65	-0.9
1,943,717	-		IAI47_09225	0.65	-2.0
1,943,717	-		IAI47_09225	0.65	+0.4
1,943,717	-		IAI47_09225	0.65	+0.4
1,943,717	-		IAI47_09225	0.65	+0.1
1,943,717	-		IAI47_09225	0.65	+1.4
1,943,722	+		IAI47_09225	0.66	+0.2
1,943,722	+		IAI47_09225	0.66	-0.4
1,943,722	+		IAI47_09225	0.66	+0.4
1,943,722	+		IAI47_09225	0.66	+0.2
1,943,722	+		IAI47_09225	0.66	-0.2
1,943,723	-		IAI47_09225	0.66	+0.9
1,943,723	-		IAI47_09225	0.66	-0.5
1,943,723	-		IAI47_09225	0.66	+0.6
1,943,799	+		IAI47_09225	0.73	+1.1
1,943,799	+		IAI47_09225	0.73	+0.2
1,943,800	-		IAI47_09225	0.73	+1.2
1,943,803	+		IAI47_09225	0.74	-0.1
1,943,803	+		IAI47_09225	0.74	-0.1
1,943,804	-		IAI47_09225	0.74	+0.1
1,943,845	+		IAI47_09225	0.78	+0.2
1,943,845	+		IAI47_09225	0.78	-0.4
1,943,845	+		IAI47_09225	0.78	-0.8
1,943,845	+		IAI47_09225	0.78	-2.4
1,943,846	-		IAI47_09225	0.78	+0.0