Strain Fitness in Pantoea sp. MT58 around IAI47_08515

Experiment: Ying_OrganicAcid7 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep A; time point 1
1,802,346	+				+0.4
1,802,346	+				+0.8
1,802,346	+				+0.2
1,802,347	-				-0.8
1,802,352	+				+0.7
1,802,352	+				+0.5
1,802,352	+				-0.1
1,802,352	+				-0.1
1,802,352	+				+2.0
1,802,352	+				+0.8
1,802,353	-				+0.1
1,802,353	-				+0.7
1,802,353	-				+0.1
1,802,353	-				-0.8
1,802,353	-				-1.8
1,802,353	-				-0.7
1,802,353	-				+0.5
1,802,353	-				-1.0
1,802,353	-				-0.2
1,802,353	-				+0.6
1,802,396	+				+0.4
1,802,396	+				-0.2
1,802,396	+				+0.3
1,802,396	+				+0.4
1,802,396	+				-0.4
1,802,397	-				+0.2
1,802,397	-				-0.9
1,802,397	-				+1.1
1,802,397	-				+0.4
1,802,397	-				-0.8
1,802,397	-				+0.8
1,802,406	+				-0.4
1,802,406	+				-1.4
1,802,406	+				-0.8
1,802,406	+				+0.0
1,802,406	+				-1.0
1,802,406	+				-0.1
1,802,407	-				-0.2
1,802,407	-				-0.2
1,802,407	-				+0.3
1,802,566	+				+0.6
1,802,566	+				+0.8
1,802,566	+				-0.1
1,802,567	-				+1.2
1,802,567	-				+0.8
1,802,635	-		IAI47_08510	0.11	+0.2
1,802,720	+		IAI47_08510	0.24	-1.1
1,802,720	+		IAI47_08510	0.24	+0.3
1,802,720	+		IAI47_08510	0.24	-1.1
1,802,720	+		IAI47_08510	0.24	+0.5
1,802,721	-		IAI47_08510	0.24	-1.1
1,802,769	+		IAI47_08510	0.32	-0.4
1,802,770	-		IAI47_08510	0.32	-0.8
1,802,770	-		IAI47_08510	0.32	-0.5
1,802,783	+		IAI47_08510	0.34	-0.2
1,802,783	+		IAI47_08510	0.34	+0.5
1,802,783	+		IAI47_08510	0.34	-0.6
1,802,784	-		IAI47_08510	0.34	+0.5
1,802,784	-		IAI47_08510	0.34	+1.1
1,802,784	-		IAI47_08510	0.34	-0.7
1,802,784	-		IAI47_08510	0.34	-0.4
1,802,784	-		IAI47_08510	0.34	-1.1
1,802,893	+		IAI47_08510	0.51	+1.1
1,802,893	+		IAI47_08510	0.51	+0.1
1,802,908	+		IAI47_08510	0.53	-0.8
1,802,960	+		IAI47_08510	0.61	+0.1
1,802,961	-		IAI47_08510	0.61	-0.0
1,803,065	+		IAI47_08510	0.77	+1.4
1,803,065	+		IAI47_08510	0.77	+1.1
1,803,066	-		IAI47_08510	0.77	+2.1
1,803,066	-		IAI47_08510	0.77	+1.4
1,803,066	-		IAI47_08510	0.77	+0.2
1,803,103	+		IAI47_08510	0.82	+0.2
1,803,104	-		IAI47_08510	0.83	+0.2
1,803,116	+		IAI47_08510	0.84	+0.2
1,803,116	+		IAI47_08510	0.84	+1.1
1,803,116	+		IAI47_08510	0.84	-0.9
1,803,117	-		IAI47_08510	0.85	+0.4
1,803,117	-		IAI47_08510	0.85	-0.3
1,803,215	+				-0.2
1,803,215	+				-0.1
1,803,215	+				-0.8
1,803,216	-				+0.1
1,803,216	-				+0.1
1,803,278	+				+0.3
1,803,278	+				-0.3
1,803,278	+				+1.8
1,803,279	-				+1.1
1,803,279	-				-0.4
1,803,279	-				+2.4
1,803,279	-				+1.4
1,803,279	-				+0.8
1,803,279	-				+1.2
1,803,279	-				+0.1
1,803,306	+				-0.7
1,803,306	+				+0.9
1,803,312	+				-0.0
1,803,313	-				+0.0
1,803,322	+				-0.6
1,803,322	+				+1.0
1,803,323	-				-0.2
1,803,323	-				+1.1
1,803,323	-				+0.4
1,803,369	-				-1.5
1,803,409	-				+1.3
1,803,412	+				+0.4
1,803,412	+				+0.8
1,803,412	+				-0.1
1,803,412	+				-0.5
1,803,412	+				+1.1
1,803,412	+				-0.2
1,803,412	+				+0.1
1,803,413	-				-0.0
1,803,413	-				-0.0
1,803,413	-				-0.8
1,803,413	-				+0.6
1,803,416	-				+0.1
1,803,461	-				-0.5
1,803,477	+				+0.2
1,803,478	-				+0.8
1,803,478	-				-0.4
1,803,531	-				-0.4
1,803,577	+		IAI47_08515	0.11	-0.2
1,803,577	+		IAI47_08515	0.11	+1.2
1,803,577	+		IAI47_08515	0.11	-0.6
1,803,578	-		IAI47_08515	0.11	-0.8
1,803,578	-		IAI47_08515	0.11	+0.3
1,803,578	-		IAI47_08515	0.11	-0.8
1,803,611	-		IAI47_08515	0.13	+0.2
1,803,637	+		IAI47_08515	0.14	+0.1
1,803,638	-		IAI47_08515	0.14	+0.5
1,803,638	-		IAI47_08515	0.14	-0.4
1,803,641	-		IAI47_08515	0.14	-0.1
1,803,641	-		IAI47_08515	0.14	+1.2
1,803,724	+		IAI47_08515	0.18	-0.1
1,803,724	+		IAI47_08515	0.18	+0.0
1,803,724	+		IAI47_08515	0.18	+0.7
1,803,724	+		IAI47_08515	0.18	-0.6
1,803,724	+		IAI47_08515	0.18	+0.8
1,803,744	+		IAI47_08515	0.19	-0.7
1,803,820	-		IAI47_08515	0.23	+2.5
1,803,851	+		IAI47_08515	0.25	+0.2
1,803,851	+		IAI47_08515	0.25	+0.5
1,803,851	+		IAI47_08515	0.25	-0.1
1,803,904	+		IAI47_08515	0.27	+0.1
1,803,904	+		IAI47_08515	0.27	+0.6
1,803,904	+		IAI47_08515	0.27	-0.2
1,803,905	-		IAI47_08515	0.27	-0.9
1,803,905	-		IAI47_08515	0.27	+1.4
1,803,905	-		IAI47_08515	0.27	-0.0
1,803,907	+		IAI47_08515	0.27	+0.5
1,803,907	+		IAI47_08515	0.27	-1.0
1,803,907	+		IAI47_08515	0.27	+0.3
1,803,907	+		IAI47_08515	0.27	-1.2
1,803,907	+		IAI47_08515	0.27	-0.8
1,803,907	+		IAI47_08515	0.27	+0.6
1,803,907	+		IAI47_08515	0.27	-0.4
1,803,907	+		IAI47_08515	0.27	-0.2
1,803,907	+		IAI47_08515	0.27	-0.8
1,803,908	-		IAI47_08515	0.27	+0.1
1,803,908	-		IAI47_08515	0.27	-0.4
1,803,908	-		IAI47_08515	0.27	+0.1
1,803,908	-		IAI47_08515	0.27	-1.5
1,803,908	-		IAI47_08515	0.27	+1.0
1,803,908	-		IAI47_08515	0.27	+0.3
1,803,908	-		IAI47_08515	0.27	-0.2
1,803,908	-		IAI47_08515	0.27	-1.4
1,803,908	-		IAI47_08515	0.27	+0.0
1,803,940	+		IAI47_08515	0.29	-0.2
1,803,940	+		IAI47_08515	0.29	+1.4
1,803,940	+		IAI47_08515	0.29	-1.1
1,803,985	-		IAI47_08515	0.31	-0.9
1,803,985	-		IAI47_08515	0.31	-1.0
1,803,994	+		IAI47_08515	0.32	-1.5
1,803,995	-		IAI47_08515	0.32	-0.4
1,804,015	+		IAI47_08515	0.33	-0.4
1,804,015	+		IAI47_08515	0.33	+0.8
1,804,015	+		IAI47_08515	0.33	+0.5
1,804,015	+		IAI47_08515	0.33	+0.1
1,804,016	-		IAI47_08515	0.33	+0.2
1,804,016	-		IAI47_08515	0.33	-0.2
1,804,016	-		IAI47_08515	0.33	-0.5
1,804,016	-		IAI47_08515	0.33	+0.4
1,804,016	-		IAI47_08515	0.33	-1.2
1,804,016	-		IAI47_08515	0.33	-0.6
1,804,016	-		IAI47_08515	0.33	+1.1
1,804,016	-		IAI47_08515	0.33	+0.1
1,804,016	-		IAI47_08515	0.33	+0.2
1,804,016	-		IAI47_08515	0.33	+0.4
1,804,016	-		IAI47_08515	0.33	-0.3
1,804,016	-		IAI47_08515	0.33	+0.2
1,804,016	-		IAI47_08515	0.33	+0.2
1,804,070	-		IAI47_08515	0.35	+0.6
1,804,070	-		IAI47_08515	0.35	+0.4
1,804,070	-		IAI47_08515	0.35	-0.2
1,804,077	+		IAI47_08515	0.36	+0.8
1,804,077	+		IAI47_08515	0.36	-0.2
1,804,077	+		IAI47_08515	0.36	+0.4
1,804,078	-		IAI47_08515	0.36	-0.0
1,804,078	-		IAI47_08515	0.36	-0.6
1,804,078	-		IAI47_08515	0.36	-2.5
1,804,097	+		IAI47_08515	0.37	-1.0
1,804,098	-		IAI47_08515	0.37	+0.3
1,804,098	-		IAI47_08515	0.37	+1.1
1,804,098	-		IAI47_08515	0.37	+0.2
1,804,162	+		IAI47_08515	0.40	-0.8
1,804,162	+		IAI47_08515	0.40	-0.6
1,804,163	-		IAI47_08515	0.40	-1.0
1,804,169	+		IAI47_08515	0.40	-3.2
1,804,177	+		IAI47_08515	0.40	+0.4
1,804,178	-		IAI47_08515	0.40	+0.9
1,804,178	-		IAI47_08515	0.40	+0.0
1,804,244	-		IAI47_08515	0.44	+0.1
1,804,244	-		IAI47_08515	0.44	-0.0
1,804,423	+		IAI47_08515	0.52	-1.8
1,804,423	+		IAI47_08515	0.52	+0.8
1,804,423	+		IAI47_08515	0.52	+0.2
1,804,423	+		IAI47_08515	0.52	+0.3
1,804,423	+		IAI47_08515	0.52	+2.4
1,804,423	+		IAI47_08515	0.52	-0.7
1,804,423	+		IAI47_08515	0.52	-0.4
1,804,423	+		IAI47_08515	0.52	-2.2
1,804,423	+		IAI47_08515	0.52	-0.3
1,804,423	+		IAI47_08515	0.52	-0.4
1,804,424	-		IAI47_08515	0.52	-1.1
1,804,424	-		IAI47_08515	0.52	-0.0
1,804,424	-		IAI47_08515	0.52	-0.6
1,804,424	-		IAI47_08515	0.52	+0.2
1,804,424	-		IAI47_08515	0.52	+0.5
1,804,441	+		IAI47_08515	0.53	-1.2
1,804,441	+		IAI47_08515	0.53	-1.0
1,804,441	+		IAI47_08515	0.53	-1.2
1,804,441	+		IAI47_08515	0.53	-0.3
1,804,441	+		IAI47_08515	0.53	+1.2
1,804,442	-		IAI47_08515	0.53	-0.2
1,804,442	-		IAI47_08515	0.53	-0.0
1,804,442	-		IAI47_08515	0.53	-2.2
1,804,442	-		IAI47_08515	0.53	+1.2
1,804,442	-		IAI47_08515	0.53	+0.4
1,804,442	-		IAI47_08515	0.53	+0.8
1,804,443	+		IAI47_08515	0.53	+0.4
1,804,444	-		IAI47_08515	0.53	-0.3
1,804,444	-		IAI47_08515	0.53	+0.6
1,804,462	-		IAI47_08515	0.54	-0.1
1,804,462	-		IAI47_08515	0.54	-0.4
1,804,527	+		IAI47_08515	0.57	-0.8
1,804,528	-		IAI47_08515	0.57	+1.8
1,804,585	+		IAI47_08515	0.60	+0.4
1,804,585	+		IAI47_08515	0.60	+1.0
1,804,585	+		IAI47_08515	0.60	+1.7
1,804,648	+		IAI47_08515	0.63	+0.6
1,804,648	+		IAI47_08515	0.63	+1.4
1,804,648	+		IAI47_08515	0.63	-0.5
1,804,649	-		IAI47_08515	0.63	-0.1
1,804,663	+		IAI47_08515	0.64	-0.7
1,804,663	+		IAI47_08515	0.64	-0.2
1,804,664	-		IAI47_08515	0.64	+0.5
1,804,693	+		IAI47_08515	0.65	+0.8
1,804,694	-		IAI47_08515	0.65	-0.0
1,804,694	-		IAI47_08515	0.65	+1.5
1,804,774	+		IAI47_08515	0.69	+0.2
1,804,774	+		IAI47_08515	0.69	+0.3
1,804,775	-		IAI47_08515	0.69	+2.4
1,804,790	+		IAI47_08515	0.70	+0.0
1,804,822	+		IAI47_08515	0.72	-0.2
1,804,822	+		IAI47_08515	0.72	-1.0
1,804,822	+		IAI47_08515	0.72	+0.6
1,804,823	-		IAI47_08515	0.72	+0.5
1,804,823	-		IAI47_08515	0.72	+1.1
1,804,869	+		IAI47_08515	0.74	-0.6
1,804,869	+		IAI47_08515	0.74	-1.2
1,804,924	+		IAI47_08515	0.77	+0.4
1,804,924	+		IAI47_08515	0.77	-0.8
1,804,925	-		IAI47_08515	0.77	+0.1
1,804,971	+		IAI47_08515	0.79	-0.3
1,805,032	-		IAI47_08515	0.82	+0.5
1,805,074	+		IAI47_08515	0.84	-1.1
1,805,074	+		IAI47_08515	0.84	-0.1
1,805,074	+		IAI47_08515	0.84	-0.8
1,805,074	+		IAI47_08515	0.84	+0.6
1,805,075	-		IAI47_08515	0.84	-0.8
1,805,075	-		IAI47_08515	0.84	-0.4
1,805,075	-		IAI47_08515	0.84	+0.1
1,805,107	+		IAI47_08515	0.85	-0.6
1,805,108	-		IAI47_08515	0.86	-0.4
1,805,111	-		IAI47_08515	0.86	+0.2
1,805,111	-		IAI47_08515	0.86	+0.2
1,805,111	-		IAI47_08515	0.86	+0.8
1,805,111	-		IAI47_08515	0.86	+1.5
1,805,116	+		IAI47_08515	0.86	-0.8
1,805,116	+		IAI47_08515	0.86	-0.7
1,805,116	+		IAI47_08515	0.86	-0.2
1,805,116	+		IAI47_08515	0.86	-0.6
1,805,116	+		IAI47_08515	0.86	-0.1
1,805,117	-		IAI47_08515	0.86	+0.5
1,805,117	-		IAI47_08515	0.86	+0.8
1,805,117	-		IAI47_08515	0.86	-0.0
1,805,117	-		IAI47_08515	0.86	-0.6
1,805,117	-		IAI47_08515	0.86	+1.5
1,805,118	+		IAI47_08515	0.86	-0.1
1,805,119	-		IAI47_08515	0.86	-0.2
1,805,129	-		IAI47_08515	0.87	-1.0
1,805,137	+		IAI47_08515	0.87	+0.6
1,805,161	+		IAI47_08515	0.88	-0.6
1,805,161	+		IAI47_08515	0.88	-0.4
1,805,162	-		IAI47_08515	0.88	+0.9
1,805,209	+				-0.5
1,805,209	+				+0.9
1,805,240	+				+0.8
1,805,241	-				+1.5
1,805,241	-				+0.4
1,805,262	+				+0.1
1,805,262	+				-0.5
1,805,262	+				-0.5
1,805,320	+				+0.4
1,805,320	+				+0.7
1,805,321	-				-0.8
1,805,321	-				-0.5
1,805,329	+				+0.1
1,805,329	+				+0.8
1,805,330	-				-0.9
1,805,351	-				+0.1
1,805,351	-				-0.0
1,805,379	+				-3.0
1,805,379	+				+1.2
1,805,380	-				+1.0
1,805,401	+				+2.1
1,805,401	+				+0.1
1,805,401	+				+0.8
1,805,401	+				+0.3
1,805,402	-				-2.8
1,805,419	+				+0.1
1,805,419	+				-0.0
1,805,419	+				+1.0
1,805,419	+				-0.8
1,805,423	+				+0.2
1,805,465	+				+0.8
1,805,465	+				-0.2
1,805,465	+				-0.4
1,805,465	+				-0.4
1,805,466	-				+0.5
1,805,473	-		IAI47_08520	0.11	-0.7
1,805,486	-		IAI47_08520	0.13	-0.2
1,805,486	-		IAI47_08520	0.13	-0.7
1,805,508	+		IAI47_08520	0.16	-0.1
1,805,530	+		IAI47_08520	0.19	+0.7
1,805,530	+		IAI47_08520	0.19	-2.0
1,805,531	-		IAI47_08520	0.19	-0.2
1,805,531	-		IAI47_08520	0.19	-0.2
1,805,621	+		IAI47_08520	0.33	-0.3
1,805,621	+		IAI47_08520	0.33	+0.9
1,805,622	-		IAI47_08520	0.33	+0.9
1,805,647	+		IAI47_08520	0.37	-0.7
1,805,647	+		IAI47_08520	0.37	+0.5
1,805,647	+		IAI47_08520	0.37	-0.6
1,805,647	+		IAI47_08520	0.37	-0.6
1,805,647	+		IAI47_08520	0.37	-1.0
1,805,647	+		IAI47_08520	0.37	-0.0
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