Strain Fitness in Pantoea sp. MT58 around IAI47_07760

Experiment: Ying_OrganicAcid7 rep A; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_07750 and IAI47_07755 overlap by 1 nucleotidesIAI47_07755 and IAI47_07760 overlap by 1 nucleotidesIAI47_07760 and IAI47_07765 overlap by 1 nucleotides IAI47_07750: IAI47_07750 - phosphonate metabolism transcriptional regulator PhnF, at 1,643,136 to 1,643,849 _07750 IAI47_07755: IAI47_07755 - phosphonate C-P lyase system protein PhnG, at 1,643,849 to 1,644,295 _07755 IAI47_07760: IAI47_07760 - phosphonate C-P lyase system protein PhnH, at 1,644,295 to 1,644,870 _07760 IAI47_07765: IAI47_07765 - carbon-phosphorus lyase complex subunit PhnI, at 1,644,870 to 1,645,946 _07765 Position (kb) 1644 1645Strain fitness (log2 ratio) -2 -1 0 1 2at 1643.351 kb on - strand, within IAI47_07750at 1643.364 kb on + strand, within IAI47_07750at 1643.364 kb on + strand, within IAI47_07750at 1643.364 kb on + strand, within IAI47_07750at 1643.364 kb on + strand, within IAI47_07750at 1643.364 kb on + strand, within IAI47_07750at 1643.364 kb on + strand, within IAI47_07750at 1643.364 kb on + strand, within IAI47_07750at 1643.364 kb on + strand, within IAI47_07750at 1643.365 kb on - strand, within IAI47_07750at 1643.365 kb on - strand, within IAI47_07750at 1643.365 kb on - strand, within IAI47_07750at 1643.365 kb on - strand, within IAI47_07750at 1643.371 kb on - strand, within IAI47_07750at 1643.452 kb on + strand, within IAI47_07750at 1643.564 kb on + strand, within IAI47_07750at 1643.638 kb on + strand, within IAI47_07750at 1643.681 kb on + strand, within IAI47_07750at 1643.796 kb on + strandat 1643.797 kb on - strandat 1643.847 kb on + strandat 1643.847 kb on + strandat 1643.848 kb on - strandat 1643.848 kb on - strandat 1644.086 kb on + strand, within IAI47_07755at 1644.087 kb on - strand, within IAI47_07755at 1644.092 kb on + strand, within IAI47_07755at 1644.092 kb on + strand, within IAI47_07755at 1644.093 kb on - strand, within IAI47_07755at 1644.093 kb on - strand, within IAI47_07755at 1644.093 kb on - strand, within IAI47_07755at 1644.093 kb on - strand, within IAI47_07755at 1644.093 kb on - strand, within IAI47_07755at 1644.093 kb on - strand, within IAI47_07755at 1644.093 kb on - strand, within IAI47_07755at 1644.190 kb on + strand, within IAI47_07755at 1644.190 kb on + strand, within IAI47_07755at 1644.190 kb on + strand, within IAI47_07755at 1644.190 kb on + strand, within IAI47_07755at 1644.191 kb on - strand, within IAI47_07755at 1644.191 kb on - strand, within IAI47_07755at 1644.193 kb on + strand, within IAI47_07755at 1644.262 kb on - strandat 1644.289 kb on + strandat 1644.289 kb on + strandat 1644.290 kb on - strandat 1644.290 kb on - strandat 1644.290 kb on - strandat 1644.302 kb on + strandat 1644.302 kb on + strandat 1644.303 kb on - strandat 1644.303 kb on - strandat 1644.315 kb on + strandat 1644.315 kb on + strandat 1644.513 kb on + strand, within IAI47_07760at 1644.514 kb on - strand, within IAI47_07760at 1644.627 kb on + strand, within IAI47_07760at 1644.627 kb on + strand, within IAI47_07760at 1644.627 kb on + strand, within IAI47_07760at 1644.627 kb on + strand, within IAI47_07760at 1644.627 kb on + strand, within IAI47_07760at 1644.628 kb on - strand, within IAI47_07760at 1644.628 kb on - strand, within IAI47_07760at 1644.729 kb on + strand, within IAI47_07760at 1644.729 kb on + strand, within IAI47_07760at 1644.729 kb on + strand, within IAI47_07760at 1644.730 kb on - strand, within IAI47_07760at 1644.730 kb on - strand, within IAI47_07760at 1644.873 kb on + strandat 1644.873 kb on + strandat 1644.873 kb on + strandat 1644.874 kb on - strandat 1644.874 kb on - strandat 1644.874 kb on - strandat 1644.874 kb on - strandat 1644.874 kb on - strandat 1644.874 kb on - strandat 1644.874 kb on - strandat 1644.874 kb on - strandat 1644.874 kb on - strandat 1644.874 kb on - strandat 1644.874 kb on - strandat 1644.909 kb on - strandat 1645.030 kb on + strand, within IAI47_07765at 1645.030 kb on + strand, within IAI47_07765at 1645.032 kb on + strand, within IAI47_07765at 1645.032 kb on + strand, within IAI47_07765at 1645.032 kb on + strand, within IAI47_07765at 1645.032 kb on + strand, within IAI47_07765at 1645.032 kb on + strand, within IAI47_07765at 1645.033 kb on - strand, within IAI47_07765at 1645.033 kb on - strand, within IAI47_07765at 1645.033 kb on - strand, within IAI47_07765at 1645.033 kb on - strand, within IAI47_07765at 1645.033 kb on - strand, within IAI47_07765at 1645.061 kb on + strand, within IAI47_07765at 1645.062 kb on - strand, within IAI47_07765at 1645.194 kb on + strand, within IAI47_07765at 1645.194 kb on + strand, within IAI47_07765at 1645.194 kb on + strand, within IAI47_07765at 1645.195 kb on - strand, within IAI47_07765at 1645.195 kb on - strand, within IAI47_07765at 1645.195 kb on - strand, within IAI47_07765at 1645.197 kb on - strand, within IAI47_07765at 1645.197 kb on - strand, within IAI47_07765at 1645.233 kb on + strand, within IAI47_07765at 1645.233 kb on + strand, within IAI47_07765at 1645.233 kb on + strand, within IAI47_07765at 1645.233 kb on + strand, within IAI47_07765at 1645.233 kb on + strand, within IAI47_07765at 1645.233 kb on + strand, within IAI47_07765at 1645.234 kb on - strand, within IAI47_07765at 1645.234 kb on - strand, within IAI47_07765at 1645.234 kb on - strand, within IAI47_07765at 1645.234 kb on - strand, within IAI47_07765at 1645.239 kb on + strand, within IAI47_07765at 1645.239 kb on + strand, within IAI47_07765at 1645.239 kb on + strand, within IAI47_07765at 1645.239 kb on + strand, within IAI47_07765at 1645.239 kb on + strand, within IAI47_07765at 1645.240 kb on - strand, within IAI47_07765at 1645.240 kb on - strand, within IAI47_07765at 1645.240 kb on - strand, within IAI47_07765at 1645.240 kb on - strand, within IAI47_07765at 1645.240 kb on - strand, within IAI47_07765at 1645.404 kb on - strand, within IAI47_07765at 1645.404 kb on - strand, within IAI47_07765at 1645.557 kb on + strand, within IAI47_07765

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 1
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1,643,351 - IAI47_07750 0.30 +0.1
1,643,364 + IAI47_07750 0.32 +0.8
1,643,364 + IAI47_07750 0.32 +0.1
1,643,364 + IAI47_07750 0.32 +1.2
1,643,364 + IAI47_07750 0.32 -1.5
1,643,364 + IAI47_07750 0.32 +0.8
1,643,364 + IAI47_07750 0.32 +0.4
1,643,364 + IAI47_07750 0.32 +1.4
1,643,364 + IAI47_07750 0.32 -1.1
1,643,365 - IAI47_07750 0.32 +1.1
1,643,365 - IAI47_07750 0.32 -0.7
1,643,365 - IAI47_07750 0.32 -0.8
1,643,365 - IAI47_07750 0.32 -0.0
1,643,371 - IAI47_07750 0.33 +0.6
1,643,452 + IAI47_07750 0.44 -0.8
1,643,564 + IAI47_07750 0.60 +0.5
1,643,638 + IAI47_07750 0.70 +0.4
1,643,681 + IAI47_07750 0.76 +1.4
1,643,796 + -0.1
1,643,797 - -0.3
1,643,847 + +2.0
1,643,847 + +0.7
1,643,848 - -0.2
1,643,848 - -0.5
1,644,086 + IAI47_07755 0.53 -0.8
1,644,087 - IAI47_07755 0.53 -0.9
1,644,092 + IAI47_07755 0.54 -0.5
1,644,092 + IAI47_07755 0.54 -1.5
1,644,093 - IAI47_07755 0.55 -0.4
1,644,093 - IAI47_07755 0.55 -0.1
1,644,093 - IAI47_07755 0.55 +0.1
1,644,093 - IAI47_07755 0.55 +0.2
1,644,093 - IAI47_07755 0.55 +1.5
1,644,093 - IAI47_07755 0.55 +1.1
1,644,093 - IAI47_07755 0.55 -0.7
1,644,190 + IAI47_07755 0.76 +0.6
1,644,190 + IAI47_07755 0.76 +0.1
1,644,190 + IAI47_07755 0.76 -0.4
1,644,190 + IAI47_07755 0.76 +0.2
1,644,191 - IAI47_07755 0.77 +2.2
1,644,191 - IAI47_07755 0.77 +0.6
1,644,193 + IAI47_07755 0.77 -1.4
1,644,262 - -0.1
1,644,289 + -0.3
1,644,289 + -0.2
1,644,290 - -1.2
1,644,290 - +0.5
1,644,290 - -0.6
1,644,302 + -1.0
1,644,302 + -0.6
1,644,303 - +0.6
1,644,303 - +0.8
1,644,315 + -0.1
1,644,315 + -1.7
1,644,513 + IAI47_07760 0.38 -0.2
1,644,514 - IAI47_07760 0.38 +0.4
1,644,627 + IAI47_07760 0.58 +0.4
1,644,627 + IAI47_07760 0.58 -0.5
1,644,627 + IAI47_07760 0.58 -0.6
1,644,627 + IAI47_07760 0.58 -1.0
1,644,627 + IAI47_07760 0.58 +0.4
1,644,628 - IAI47_07760 0.58 +0.3
1,644,628 - IAI47_07760 0.58 +1.2
1,644,729 + IAI47_07760 0.75 -0.4
1,644,729 + IAI47_07760 0.75 -0.2
1,644,729 + IAI47_07760 0.75 +0.3
1,644,730 - IAI47_07760 0.76 -0.0
1,644,730 - IAI47_07760 0.76 +0.6
1,644,873 + +0.8
1,644,873 + +0.4
1,644,873 + +0.9
1,644,874 - +0.2
1,644,874 - -0.4
1,644,874 - -0.7
1,644,874 - +0.0
1,644,874 - -1.6
1,644,874 - +0.5
1,644,874 - +0.8
1,644,874 - +0.1
1,644,874 - +0.0
1,644,874 - +0.8
1,644,874 - -0.2
1,644,909 - -0.7
1,645,030 + IAI47_07765 0.15 +0.4
1,645,030 + IAI47_07765 0.15 +0.8
1,645,032 + IAI47_07765 0.15 +1.5
1,645,032 + IAI47_07765 0.15 -0.0
1,645,032 + IAI47_07765 0.15 +0.4
1,645,032 + IAI47_07765 0.15 -0.4
1,645,032 + IAI47_07765 0.15 +1.2
1,645,033 - IAI47_07765 0.15 +0.8
1,645,033 - IAI47_07765 0.15 +0.5
1,645,033 - IAI47_07765 0.15 -1.9
1,645,033 - IAI47_07765 0.15 -0.2
1,645,033 - IAI47_07765 0.15 +1.1
1,645,061 + IAI47_07765 0.18 -0.2
1,645,062 - IAI47_07765 0.18 +0.4
1,645,194 + IAI47_07765 0.30 +0.4
1,645,194 + IAI47_07765 0.30 +0.4
1,645,194 + IAI47_07765 0.30 -1.5
1,645,195 - IAI47_07765 0.30 -0.5
1,645,195 - IAI47_07765 0.30 -0.4
1,645,195 - IAI47_07765 0.30 +0.5
1,645,197 - IAI47_07765 0.30 +0.0
1,645,197 - IAI47_07765 0.30 +0.5
1,645,233 + IAI47_07765 0.34 +0.1
1,645,233 + IAI47_07765 0.34 +0.3
1,645,233 + IAI47_07765 0.34 -0.2
1,645,233 + IAI47_07765 0.34 +0.2
1,645,233 + IAI47_07765 0.34 -0.5
1,645,233 + IAI47_07765 0.34 -0.1
1,645,234 - IAI47_07765 0.34 -0.2
1,645,234 - IAI47_07765 0.34 +0.2
1,645,234 - IAI47_07765 0.34 -0.2
1,645,234 - IAI47_07765 0.34 +0.3
1,645,239 + IAI47_07765 0.34 -0.2
1,645,239 + IAI47_07765 0.34 -0.8
1,645,239 + IAI47_07765 0.34 +0.2
1,645,239 + IAI47_07765 0.34 -0.2
1,645,239 + IAI47_07765 0.34 -0.1
1,645,240 - IAI47_07765 0.34 +0.6
1,645,240 - IAI47_07765 0.34 -0.8
1,645,240 - IAI47_07765 0.34 -0.2
1,645,240 - IAI47_07765 0.34 +0.1
1,645,240 - IAI47_07765 0.34 -0.2
1,645,404 - IAI47_07765 0.50 -0.5
1,645,404 - IAI47_07765 0.50 +1.8
1,645,557 + IAI47_07765 0.64 -0.2

Or see this region's nucleotide sequence