Experiment: Ying_OrganicAcid7 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_01375 and IAI47_01380 are separated by 293 nucleotides IAI47_01380 and IAI47_01385 are separated by 1 nucleotides IAI47_01385 and IAI47_01390 are separated by 54 nucleotides
IAI47_01375: IAI47_01375 - aldo/keto reductase, at 297,209 to 298,195
_01375
IAI47_01380: IAI47_01380 - hypothetical protein, at 298,489 to 298,686
_01380
IAI47_01385: IAI47_01385 - hypothetical protein, at 298,688 to 299,515
_01385
IAI47_01390: IAI47_01390 - LacI family DNA-binding transcriptional regulator, at 299,570 to 300,589
_01390
Position (kb) 298
299 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 297.509 kb on - strand, within IAI47_01375 at 297.509 kb on - strand, within IAI47_01375 at 297.669 kb on + strand, within IAI47_01375 at 297.669 kb on + strand, within IAI47_01375 at 297.748 kb on - strand, within IAI47_01375 at 297.748 kb on - strand, within IAI47_01375 at 297.807 kb on + strand, within IAI47_01375 at 297.807 kb on + strand, within IAI47_01375 at 297.808 kb on - strand, within IAI47_01375 at 297.808 kb on - strand, within IAI47_01375 at 297.808 kb on - strand, within IAI47_01375 at 297.808 kb on - strand, within IAI47_01375 at 297.808 kb on - strand, within IAI47_01375 at 297.808 kb on - strand, within IAI47_01375 at 297.808 kb on - strand, within IAI47_01375 at 297.808 kb on - strand, within IAI47_01375 at 297.810 kb on + strand, within IAI47_01375 at 297.810 kb on + strand, within IAI47_01375 at 297.810 kb on + strand, within IAI47_01375 at 297.810 kb on + strand, within IAI47_01375 at 297.811 kb on - strand, within IAI47_01375 at 297.811 kb on - strand, within IAI47_01375 at 297.811 kb on - strand, within IAI47_01375 at 297.811 kb on - strand, within IAI47_01375 at 297.811 kb on - strand, within IAI47_01375 at 297.811 kb on - strand, within IAI47_01375 at 297.887 kb on - strand, within IAI47_01375 at 297.913 kb on - strand, within IAI47_01375 at 297.913 kb on - strand, within IAI47_01375 at 297.913 kb on - strand, within IAI47_01375 at 298.029 kb on + strand, within IAI47_01375 at 298.029 kb on + strand, within IAI47_01375 at 298.030 kb on - strand, within IAI47_01375 at 298.030 kb on - strand, within IAI47_01375 at 298.030 kb on - strand, within IAI47_01375 at 298.042 kb on + strand, within IAI47_01375 at 298.043 kb on - strand, within IAI47_01375 at 298.048 kb on + strand, within IAI47_01375 at 298.049 kb on - strand, within IAI47_01375 at 298.049 kb on - strand, within IAI47_01375 at 298.049 kb on - strand, within IAI47_01375 at 298.255 kb on - strand at 298.286 kb on + strand at 298.286 kb on + strand at 298.339 kb on + strand at 298.339 kb on + strand at 298.339 kb on + strand at 298.339 kb on + strand at 298.339 kb on + strand at 298.340 kb on - strand at 298.340 kb on - strand at 298.340 kb on - strand at 298.354 kb on + strand at 298.369 kb on + strand at 298.381 kb on + strand at 298.456 kb on + strand at 298.456 kb on + strand at 298.456 kb on + strand at 298.456 kb on + strand at 298.456 kb on + strand at 298.456 kb on + strand at 298.457 kb on - strand at 298.457 kb on - strand at 298.457 kb on - strand at 298.457 kb on - strand at 298.457 kb on - strand at 298.488 kb on + strand at 298.489 kb on - strand at 298.489 kb on - strand at 298.500 kb on + strand at 298.503 kb on + strand at 298.503 kb on + strand at 298.542 kb on + strand, within IAI47_01380 at 298.542 kb on + strand, within IAI47_01380 at 298.543 kb on - strand, within IAI47_01380 at 298.543 kb on - strand, within IAI47_01380 at 298.543 kb on - strand, within IAI47_01380 at 298.543 kb on - strand, within IAI47_01380 at 298.558 kb on - strand, within IAI47_01380 at 298.593 kb on + strand, within IAI47_01380 at 298.593 kb on + strand, within IAI47_01380 at 298.594 kb on - strand, within IAI47_01380 at 298.594 kb on - strand, within IAI47_01380 at 298.594 kb on - strand, within IAI47_01380 at 298.594 kb on - strand, within IAI47_01380 at 298.594 kb on - strand, within IAI47_01380 at 298.594 kb on - strand, within IAI47_01380 at 298.612 kb on - strand, within IAI47_01380 at 298.669 kb on - strand at 298.669 kb on - strand at 298.674 kb on - strand at 298.682 kb on + strand at 298.682 kb on + strand at 298.682 kb on + strand at 298.683 kb on - strand at 298.683 kb on - strand at 298.683 kb on - strand at 298.683 kb on - strand at 298.683 kb on - strand at 298.684 kb on + strand at 298.684 kb on + strand at 298.684 kb on + strand at 298.684 kb on + strand at 298.684 kb on + strand at 298.684 kb on + strand at 298.684 kb on + strand at 298.684 kb on + strand at 298.684 kb on + strand at 298.684 kb on + strand at 298.684 kb on + strand at 298.684 kb on + strand at 298.684 kb on + strand at 298.684 kb on + strand at 298.685 kb on - strand at 298.685 kb on - strand at 298.685 kb on - strand at 298.685 kb on - strand at 298.685 kb on - strand at 298.685 kb on - strand at 298.685 kb on - strand at 298.685 kb on - strand at 298.685 kb on - strand at 298.685 kb on - strand at 298.685 kb on - strand at 298.685 kb on - strand at 298.685 kb on - strand at 298.685 kb on - strand at 298.685 kb on - strand at 298.685 kb on - strand at 298.685 kb on - strand at 298.685 kb on - strand at 298.701 kb on + strand at 298.702 kb on - strand at 298.702 kb on - strand at 298.702 kb on - strand at 298.705 kb on + strand at 298.705 kb on + strand at 298.705 kb on + strand at 298.705 kb on + strand at 298.705 kb on + strand at 298.706 kb on - strand at 298.706 kb on - strand at 298.706 kb on - strand at 298.706 kb on - strand at 298.706 kb on - strand at 298.706 kb on - strand at 298.728 kb on - strand at 298.734 kb on - strand at 298.734 kb on - strand at 298.734 kb on - strand at 298.793 kb on + strand, within IAI47_01385 at 298.793 kb on + strand, within IAI47_01385 at 298.793 kb on + strand, within IAI47_01385 at 298.793 kb on + strand, within IAI47_01385 at 298.793 kb on + strand, within IAI47_01385 at 298.794 kb on - strand, within IAI47_01385 at 298.794 kb on - strand, within IAI47_01385 at 298.794 kb on - strand, within IAI47_01385 at 298.794 kb on - strand, within IAI47_01385 at 298.811 kb on + strand, within IAI47_01385 at 298.812 kb on - strand, within IAI47_01385 at 298.812 kb on - strand, within IAI47_01385 at 298.812 kb on - strand, within IAI47_01385 at 298.820 kb on - strand, within IAI47_01385 at 298.839 kb on + strand, within IAI47_01385 at 298.840 kb on - strand, within IAI47_01385 at 298.866 kb on + strand, within IAI47_01385 at 298.866 kb on + strand, within IAI47_01385 at 298.866 kb on + strand, within IAI47_01385 at 298.867 kb on - strand, within IAI47_01385 at 298.867 kb on - strand, within IAI47_01385 at 298.867 kb on - strand, within IAI47_01385 at 298.876 kb on + strand, within IAI47_01385 at 298.876 kb on + strand, within IAI47_01385 at 298.942 kb on + strand, within IAI47_01385 at 298.943 kb on - strand, within IAI47_01385 at 299.015 kb on + strand, within IAI47_01385 at 299.016 kb on - strand, within IAI47_01385 at 299.053 kb on - strand, within IAI47_01385 at 299.062 kb on + strand, within IAI47_01385 at 299.063 kb on - strand, within IAI47_01385 at 299.073 kb on - strand, within IAI47_01385 at 299.149 kb on + strand, within IAI47_01385 at 299.149 kb on + strand, within IAI47_01385 at 299.149 kb on + strand, within IAI47_01385 at 299.149 kb on + strand, within IAI47_01385 at 299.149 kb on + strand, within IAI47_01385 at 299.171 kb on + strand, within IAI47_01385 at 299.171 kb on + strand, within IAI47_01385 at 299.171 kb on + strand, within IAI47_01385 at 299.172 kb on - strand, within IAI47_01385 at 299.172 kb on - strand, within IAI47_01385 at 299.172 kb on - strand, within IAI47_01385 at 299.204 kb on + strand, within IAI47_01385 at 299.204 kb on + strand, within IAI47_01385 at 299.204 kb on + strand, within IAI47_01385 at 299.205 kb on - strand, within IAI47_01385 at 299.205 kb on - strand, within IAI47_01385 at 299.205 kb on - strand, within IAI47_01385 at 299.215 kb on + strand, within IAI47_01385 at 299.216 kb on - strand, within IAI47_01385 at 299.287 kb on + strand, within IAI47_01385 at 299.287 kb on + strand, within IAI47_01385 at 299.287 kb on + strand, within IAI47_01385 at 299.287 kb on + strand, within IAI47_01385 at 299.287 kb on + strand, within IAI47_01385 at 299.287 kb on + strand, within IAI47_01385 at 299.288 kb on - strand, within IAI47_01385 at 299.288 kb on - strand, within IAI47_01385 at 299.288 kb on - strand, within IAI47_01385 at 299.288 kb on - strand, within IAI47_01385 at 299.288 kb on - strand, within IAI47_01385 at 299.288 kb on - strand, within IAI47_01385 at 299.288 kb on - strand, within IAI47_01385 at 299.288 kb on - strand, within IAI47_01385 at 299.288 kb on - strand, within IAI47_01385 at 299.288 kb on - strand, within IAI47_01385 at 299.291 kb on + strand, within IAI47_01385 at 299.291 kb on + strand, within IAI47_01385 at 299.291 kb on + strand, within IAI47_01385 at 299.291 kb on + strand, within IAI47_01385 at 299.291 kb on + strand, within IAI47_01385 at 299.292 kb on - strand, within IAI47_01385 at 299.292 kb on - strand, within IAI47_01385 at 299.292 kb on - strand, within IAI47_01385 at 299.292 kb on - strand, within IAI47_01385 at 299.292 kb on - strand, within IAI47_01385 at 299.292 kb on - strand, within IAI47_01385 at 299.292 kb on - strand, within IAI47_01385 at 299.303 kb on + strand, within IAI47_01385 at 299.304 kb on - strand, within IAI47_01385 at 299.382 kb on + strand, within IAI47_01385 at 299.382 kb on + strand, within IAI47_01385 at 299.383 kb on - strand, within IAI47_01385 at 299.383 kb on - strand, within IAI47_01385 at 299.383 kb on - strand, within IAI47_01385 at 299.383 kb on - strand, within IAI47_01385 at 299.383 kb on - strand, within IAI47_01385 at 299.383 kb on - strand, within IAI47_01385 at 299.383 kb on - strand, within IAI47_01385 at 299.491 kb on + strand at 299.491 kb on + strand at 299.491 kb on + strand at 299.492 kb on - strand at 299.492 kb on - strand at 299.492 kb on - strand at 299.492 kb on - strand at 299.514 kb on - strand at 299.578 kb on + strand at 299.591 kb on - strand at 299.611 kb on + strand at 299.622 kb on + strand at 299.622 kb on + strand at 299.622 kb on + strand at 299.623 kb on - strand at 299.623 kb on - strand at 299.623 kb on - strand at 299.623 kb on - strand at 299.657 kb on + strand at 299.657 kb on + strand at 299.657 kb on + strand at 299.657 kb on + strand at 299.657 kb on + strand at 299.657 kb on + strand at 299.657 kb on + strand at 299.658 kb on - strand at 299.658 kb on - strand at 299.658 kb on - strand at 299.658 kb on - strand at 299.658 kb on - strand at 299.658 kb on - strand at 299.658 kb on - strand at 299.658 kb on - strand at 299.658 kb on - strand at 299.658 kb on - strand at 299.658 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 1 remove 297,509 - IAI47_01375 0.30 +0.4 297,509 - IAI47_01375 0.30 +0.0 297,669 + IAI47_01375 0.47 -0.9 297,669 + IAI47_01375 0.47 -1.1 297,748 - IAI47_01375 0.55 -0.9 297,748 - IAI47_01375 0.55 -0.5 297,807 + IAI47_01375 0.61 -0.1 297,807 + IAI47_01375 0.61 -0.9 297,808 - IAI47_01375 0.61 +0.1 297,808 - IAI47_01375 0.61 +1.6 297,808 - IAI47_01375 0.61 +1.4 297,808 - IAI47_01375 0.61 +0.9 297,808 - IAI47_01375 0.61 +0.6 297,808 - IAI47_01375 0.61 -0.6 297,808 - IAI47_01375 0.61 +0.1 297,808 - IAI47_01375 0.61 -0.1 297,810 + IAI47_01375 0.61 +0.3 297,810 + IAI47_01375 0.61 +0.0 297,810 + IAI47_01375 0.61 -0.9 297,810 + IAI47_01375 0.61 -0.1 297,811 - IAI47_01375 0.61 -0.7 297,811 - IAI47_01375 0.61 +1.0 297,811 - IAI47_01375 0.61 +0.3 297,811 - IAI47_01375 0.61 -0.1 297,811 - IAI47_01375 0.61 +1.7 297,811 - IAI47_01375 0.61 +0.4 297,887 - IAI47_01375 0.69 +0.6 297,913 - IAI47_01375 0.71 +0.2 297,913 - IAI47_01375 0.71 -0.2 297,913 - IAI47_01375 0.71 +0.4 298,029 + IAI47_01375 0.83 -0.1 298,029 + IAI47_01375 0.83 -0.0 298,030 - IAI47_01375 0.83 -0.4 298,030 - IAI47_01375 0.83 -0.7 298,030 - IAI47_01375 0.83 +0.4 298,042 + IAI47_01375 0.84 +0.3 298,043 - IAI47_01375 0.84 -0.4 298,048 + IAI47_01375 0.85 -1.2 298,049 - IAI47_01375 0.85 +0.9 298,049 - IAI47_01375 0.85 -0.7 298,049 - IAI47_01375 0.85 -2.0 298,255 - -0.5 298,286 + +2.9 298,286 + -0.1 298,339 + -0.3 298,339 + -2.3 298,339 + -0.9 298,339 + -0.2 298,339 + +2.3 298,340 - -0.6 298,340 - -0.0 298,340 - -0.5 298,354 + -0.4 298,369 + +0.9 298,381 + +0.5 298,456 + -1.1 298,456 + +0.0 298,456 + +0.6 298,456 + +0.9 298,456 + -0.5 298,456 + -0.3 298,457 - +1.6 298,457 - -1.3 298,457 - +0.7 298,457 - +0.3 298,457 - +0.4 298,488 + +1.3 298,489 - -0.1 298,489 - +0.3 298,500 + +0.4 298,503 + -0.0 298,503 + +0.9 298,542 + IAI47_01380 0.27 -0.4 298,542 + IAI47_01380 0.27 -0.9 298,543 - IAI47_01380 0.27 -0.6 298,543 - IAI47_01380 0.27 +0.1 298,543 - IAI47_01380 0.27 +0.2 298,543 - IAI47_01380 0.27 -1.0 298,558 - IAI47_01380 0.35 -0.6 298,593 + IAI47_01380 0.53 +0.1 298,593 + IAI47_01380 0.53 +0.9 298,594 - IAI47_01380 0.53 +0.3 298,594 - IAI47_01380 0.53 -0.1 298,594 - IAI47_01380 0.53 -0.9 298,594 - IAI47_01380 0.53 -1.5 298,594 - IAI47_01380 0.53 -0.1 298,594 - IAI47_01380 0.53 -1.1 298,612 - IAI47_01380 0.62 -1.0 298,669 - -0.8 298,669 - -0.7 298,674 - +0.4 298,682 + -0.1 298,682 + +0.5 298,682 + -1.8 298,683 - -0.4 298,683 - +0.3 298,683 - +0.3 298,683 - -0.7 298,683 - +0.9 298,684 + +0.9 298,684 + +0.9 298,684 + +0.7 298,684 + +0.3 298,684 + +0.0 298,684 + +0.3 298,684 + -0.5 298,684 + +0.2 298,684 + +0.1 298,684 + +1.5 298,684 + -0.4 298,684 + -0.0 298,684 + +0.2 298,684 + +0.9 298,685 - +0.1 298,685 - -0.7 298,685 - +0.4 298,685 - +1.4 298,685 - -1.1 298,685 - +2.4 298,685 - -0.8 298,685 - +0.4 298,685 - +0.3 298,685 - +0.3 298,685 - -0.0 298,685 - +1.9 298,685 - -0.1 298,685 - +0.3 298,685 - -0.7 298,685 - +0.4 298,685 - -0.1 298,685 - +0.3 298,701 + -0.6 298,702 - -0.1 298,702 - +0.9 298,702 - -0.1 298,705 + +0.6 298,705 + +0.1 298,705 + +0.6 298,705 + -0.5 298,705 + -0.5 298,706 - -1.1 298,706 - -0.5 298,706 - +0.1 298,706 - +1.0 298,706 - +0.4 298,706 - +0.3 298,728 - -1.1 298,734 - -0.7 298,734 - -0.3 298,734 - +1.6 298,793 + IAI47_01385 0.13 +0.1 298,793 + IAI47_01385 0.13 -0.5 298,793 + IAI47_01385 0.13 +0.2 298,793 + IAI47_01385 0.13 +0.9 298,793 + IAI47_01385 0.13 -0.7 298,794 - IAI47_01385 0.13 -0.1 298,794 - IAI47_01385 0.13 -0.8 298,794 - IAI47_01385 0.13 +0.7 298,794 - IAI47_01385 0.13 +1.9 298,811 + IAI47_01385 0.15 -1.7 298,812 - IAI47_01385 0.15 -0.3 298,812 - IAI47_01385 0.15 -0.1 298,812 - IAI47_01385 0.15 +0.6 298,820 - IAI47_01385 0.16 -0.1 298,839 + IAI47_01385 0.18 +0.0 298,840 - IAI47_01385 0.18 +0.1 298,866 + IAI47_01385 0.21 +1.9 298,866 + IAI47_01385 0.21 +0.9 298,866 + IAI47_01385 0.21 +0.9 298,867 - IAI47_01385 0.22 +0.0 298,867 - IAI47_01385 0.22 +1.3 298,867 - IAI47_01385 0.22 -0.7 298,876 + IAI47_01385 0.23 -0.2 298,876 + IAI47_01385 0.23 -0.3 298,942 + IAI47_01385 0.31 -0.4 298,943 - IAI47_01385 0.31 -0.6 299,015 + IAI47_01385 0.39 +0.4 299,016 - IAI47_01385 0.40 +0.4 299,053 - IAI47_01385 0.44 +1.4 299,062 + IAI47_01385 0.45 -0.3 299,063 - IAI47_01385 0.45 -0.4 299,073 - IAI47_01385 0.46 -0.9 299,149 + IAI47_01385 0.56 -1.1 299,149 + IAI47_01385 0.56 +0.3 299,149 + IAI47_01385 0.56 +0.3 299,149 + IAI47_01385 0.56 +0.9 299,149 + IAI47_01385 0.56 -1.2 299,171 + IAI47_01385 0.58 -0.4 299,171 + IAI47_01385 0.58 -0.5 299,171 + IAI47_01385 0.58 +1.4 299,172 - IAI47_01385 0.58 -1.5 299,172 - IAI47_01385 0.58 +0.4 299,172 - IAI47_01385 0.58 +0.4 299,204 + IAI47_01385 0.62 -0.5 299,204 + IAI47_01385 0.62 +0.6 299,204 + IAI47_01385 0.62 +1.2 299,205 - IAI47_01385 0.62 +0.1 299,205 - IAI47_01385 0.62 -0.0 299,205 - IAI47_01385 0.62 -1.0 299,215 + IAI47_01385 0.64 -0.1 299,216 - IAI47_01385 0.64 +1.1 299,287 + IAI47_01385 0.72 +1.0 299,287 + IAI47_01385 0.72 -0.9 299,287 + IAI47_01385 0.72 -1.7 299,287 + IAI47_01385 0.72 +0.6 299,287 + IAI47_01385 0.72 -0.1 299,287 + IAI47_01385 0.72 +1.1 299,288 - IAI47_01385 0.72 -1.1 299,288 - IAI47_01385 0.72 -0.0 299,288 - IAI47_01385 0.72 +1.3 299,288 - IAI47_01385 0.72 -0.9 299,288 - IAI47_01385 0.72 -0.5 299,288 - IAI47_01385 0.72 +0.6 299,288 - IAI47_01385 0.72 +0.6 299,288 - IAI47_01385 0.72 -0.1 299,288 - IAI47_01385 0.72 +0.4 299,288 - IAI47_01385 0.72 -1.3 299,291 + IAI47_01385 0.73 +0.5 299,291 + IAI47_01385 0.73 +0.1 299,291 + IAI47_01385 0.73 +0.9 299,291 + IAI47_01385 0.73 -0.4 299,291 + IAI47_01385 0.73 +0.3 299,292 - IAI47_01385 0.73 -1.7 299,292 - IAI47_01385 0.73 -0.2 299,292 - IAI47_01385 0.73 -1.1 299,292 - IAI47_01385 0.73 +0.3 299,292 - IAI47_01385 0.73 -1.7 299,292 - IAI47_01385 0.73 +0.8 299,292 - IAI47_01385 0.73 +0.3 299,303 + IAI47_01385 0.74 +1.0 299,304 - IAI47_01385 0.74 +1.9 299,382 + IAI47_01385 0.84 +0.1 299,382 + IAI47_01385 0.84 +0.0 299,383 - IAI47_01385 0.84 +0.7 299,383 - IAI47_01385 0.84 -1.1 299,383 - IAI47_01385 0.84 +0.4 299,383 - IAI47_01385 0.84 +0.1 299,383 - IAI47_01385 0.84 +0.1 299,383 - IAI47_01385 0.84 +0.9 299,383 - IAI47_01385 0.84 +0.3 299,491 + -1.5 299,491 + +0.5 299,491 + -0.7 299,492 - +0.8 299,492 - -1.3 299,492 - -0.5 299,492 - +0.4 299,514 - -1.0 299,578 + -1.1 299,591 - +0.3 299,611 + -0.8 299,622 + -0.7 299,622 + +0.4 299,622 + -1.6 299,623 - -0.1 299,623 - -0.4 299,623 - -0.9 299,623 - +0.2 299,657 + -0.1 299,657 + -1.1 299,657 + -0.3 299,657 + -0.1 299,657 + +0.2 299,657 + +0.1 299,657 + -0.0 299,658 - +0.2 299,658 - -0.3 299,658 - -0.6 299,658 - +0.1 299,658 - +0.1 299,658 - -0.8 299,658 - -0.3 299,658 - -0.0 299,658 - +1.0 299,658 - +0.0 299,658 - +0.1
Or see this region's nucleotide sequence