Strain Fitness in Pantoea sp. MT58 around IAI47_20240

Experiment: Ying_AminoAcid20 rep C; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_20235 and IAI47_20240 are separated by 71 nucleotidesIAI47_20240 and IAI47_20245 overlap by 14 nucleotidesIAI47_20245 and IAI47_20250 are separated by 51 nucleotides IAI47_20235: IAI47_20235 - thioredoxin family protein, at 281,872 to 283,113 _20235 IAI47_20240: IAI47_20240 - sigma-70 family RNA polymerase sigma factor, at 283,185 to 283,739 _20240 IAI47_20245: IAI47_20245 - DUF1109 domain-containing protein, at 283,726 to 284,367 _20245 IAI47_20250: IAI47_20250 - DeoR family transcriptional regulator, at 284,419 to 284,580 _20250 Position (kb) 283 284Strain fitness (log2 ratio) -2 -1 0 1 2 3at 282.322 kb on + strand, within IAI47_20235at 282.323 kb on - strand, within IAI47_20235at 282.323 kb on - strand, within IAI47_20235at 282.348 kb on + strand, within IAI47_20235at 282.348 kb on + strand, within IAI47_20235at 282.348 kb on + strand, within IAI47_20235at 282.348 kb on + strand, within IAI47_20235at 282.349 kb on - strand, within IAI47_20235at 282.349 kb on - strand, within IAI47_20235at 282.349 kb on - strand, within IAI47_20235at 282.357 kb on + strand, within IAI47_20235at 282.357 kb on + strand, within IAI47_20235at 282.358 kb on - strand, within IAI47_20235at 282.358 kb on - strand, within IAI47_20235at 282.358 kb on - strand, within IAI47_20235at 282.396 kb on + strand, within IAI47_20235at 282.397 kb on - strand, within IAI47_20235at 282.397 kb on - strand, within IAI47_20235at 282.404 kb on + strand, within IAI47_20235at 282.405 kb on - strand, within IAI47_20235at 282.431 kb on + strand, within IAI47_20235at 282.487 kb on - strand, within IAI47_20235at 282.487 kb on - strand, within IAI47_20235at 282.579 kb on + strand, within IAI47_20235at 282.621 kb on + strand, within IAI47_20235at 282.621 kb on + strand, within IAI47_20235at 282.621 kb on + strand, within IAI47_20235at 282.622 kb on - strand, within IAI47_20235at 282.644 kb on + strand, within IAI47_20235at 282.644 kb on + strand, within IAI47_20235at 282.644 kb on + strand, within IAI47_20235at 282.644 kb on + strand, within IAI47_20235at 282.644 kb on + strand, within IAI47_20235at 282.645 kb on - strand, within IAI47_20235at 282.645 kb on - strand, within IAI47_20235at 282.789 kb on + strand, within IAI47_20235at 282.789 kb on + strand, within IAI47_20235at 282.790 kb on - strand, within IAI47_20235at 282.792 kb on + strand, within IAI47_20235at 282.793 kb on - strand, within IAI47_20235at 282.793 kb on - strand, within IAI47_20235at 282.811 kb on - strand, within IAI47_20235at 282.826 kb on - strand, within IAI47_20235at 282.840 kb on + strand, within IAI47_20235at 282.841 kb on - strand, within IAI47_20235at 282.841 kb on - strand, within IAI47_20235at 282.841 kb on - strand, within IAI47_20235at 282.841 kb on - strand, within IAI47_20235at 282.841 kb on - strand, within IAI47_20235at 282.843 kb on + strand, within IAI47_20235at 282.843 kb on + strand, within IAI47_20235at 282.843 kb on + strand, within IAI47_20235at 282.843 kb on + strand, within IAI47_20235at 282.843 kb on + strand, within IAI47_20235at 282.843 kb on + strand, within IAI47_20235at 282.843 kb on + strand, within IAI47_20235at 282.843 kb on + strand, within IAI47_20235at 282.844 kb on - strand, within IAI47_20235at 282.844 kb on - strand, within IAI47_20235at 282.844 kb on - strand, within IAI47_20235at 282.855 kb on - strand, within IAI47_20235at 282.913 kb on - strand, within IAI47_20235at 282.919 kb on + strand, within IAI47_20235at 282.919 kb on + strand, within IAI47_20235at 282.919 kb on + strand, within IAI47_20235at 282.919 kb on + strand, within IAI47_20235at 282.920 kb on - strand, within IAI47_20235at 282.920 kb on - strand, within IAI47_20235at 282.920 kb on - strand, within IAI47_20235at 282.920 kb on - strand, within IAI47_20235at 282.943 kb on + strand, within IAI47_20235at 282.943 kb on + strand, within IAI47_20235at 282.943 kb on + strand, within IAI47_20235at 282.943 kb on + strand, within IAI47_20235at 282.944 kb on - strand, within IAI47_20235at 282.944 kb on - strand, within IAI47_20235at 282.944 kb on - strand, within IAI47_20235at 282.944 kb on - strand, within IAI47_20235at 282.944 kb on - strand, within IAI47_20235at 282.944 kb on - strand, within IAI47_20235at 282.945 kb on + strand, within IAI47_20235at 282.945 kb on + strand, within IAI47_20235at 282.946 kb on - strand, within IAI47_20235at 282.946 kb on - strand, within IAI47_20235at 283.000 kb on + strandat 283.000 kb on + strandat 283.035 kb on - strandat 283.037 kb on + strandat 283.037 kb on + strandat 283.037 kb on + strandat 283.037 kb on + strandat 283.037 kb on + strandat 283.037 kb on + strandat 283.038 kb on - strandat 283.038 kb on - strandat 283.040 kb on + strandat 283.040 kb on + strandat 283.041 kb on - strandat 283.041 kb on - strandat 283.124 kb on + strandat 283.125 kb on - strandat 283.260 kb on + strand, within IAI47_20240at 283.260 kb on + strand, within IAI47_20240at 283.260 kb on + strand, within IAI47_20240at 283.261 kb on - strand, within IAI47_20240at 283.261 kb on - strand, within IAI47_20240at 283.261 kb on - strand, within IAI47_20240at 283.261 kb on - strand, within IAI47_20240at 283.262 kb on + strand, within IAI47_20240at 283.263 kb on - strand, within IAI47_20240at 283.303 kb on + strand, within IAI47_20240at 283.303 kb on + strand, within IAI47_20240at 283.304 kb on - strand, within IAI47_20240at 283.304 kb on - strand, within IAI47_20240at 283.304 kb on - strand, within IAI47_20240at 283.389 kb on + strand, within IAI47_20240at 283.390 kb on - strand, within IAI47_20240at 283.408 kb on + strand, within IAI47_20240at 283.451 kb on + strand, within IAI47_20240at 283.451 kb on + strand, within IAI47_20240at 283.451 kb on + strand, within IAI47_20240at 283.451 kb on + strand, within IAI47_20240at 283.451 kb on + strand, within IAI47_20240at 283.452 kb on - strand, within IAI47_20240at 283.452 kb on - strand, within IAI47_20240at 283.452 kb on - strand, within IAI47_20240at 283.452 kb on - strand, within IAI47_20240at 283.484 kb on - strand, within IAI47_20240at 283.484 kb on - strand, within IAI47_20240at 283.484 kb on - strand, within IAI47_20240at 283.547 kb on + strand, within IAI47_20240at 283.570 kb on + strand, within IAI47_20240at 283.580 kb on - strand, within IAI47_20240at 283.606 kb on + strand, within IAI47_20240at 283.606 kb on + strand, within IAI47_20240at 283.606 kb on + strand, within IAI47_20240at 283.607 kb on - strand, within IAI47_20240at 283.607 kb on - strand, within IAI47_20240at 283.671 kb on - strand, within IAI47_20240at 283.704 kb on - strandat 283.710 kb on + strandat 283.711 kb on - strandat 283.711 kb on - strandat 283.711 kb on - strandat 283.745 kb on + strandat 283.745 kb on + strandat 283.875 kb on + strand, within IAI47_20245at 283.965 kb on + strand, within IAI47_20245at 283.966 kb on - strand, within IAI47_20245at 284.052 kb on + strand, within IAI47_20245at 284.052 kb on + strand, within IAI47_20245at 284.052 kb on + strand, within IAI47_20245at 284.052 kb on + strand, within IAI47_20245at 284.053 kb on - strand, within IAI47_20245at 284.053 kb on - strand, within IAI47_20245at 284.053 kb on - strand, within IAI47_20245at 284.053 kb on - strand, within IAI47_20245at 284.053 kb on - strand, within IAI47_20245at 284.053 kb on - strand, within IAI47_20245at 284.053 kb on - strand, within IAI47_20245at 284.110 kb on + strand, within IAI47_20245at 284.110 kb on + strand, within IAI47_20245at 284.110 kb on + strand, within IAI47_20245at 284.110 kb on + strand, within IAI47_20245at 284.111 kb on - strand, within IAI47_20245at 284.111 kb on - strand, within IAI47_20245at 284.118 kb on + strand, within IAI47_20245at 284.118 kb on + strand, within IAI47_20245at 284.118 kb on + strand, within IAI47_20245at 284.119 kb on - strand, within IAI47_20245at 284.119 kb on - strand, within IAI47_20245at 284.274 kb on + strand, within IAI47_20245at 284.278 kb on - strand, within IAI47_20245at 284.289 kb on + strand, within IAI47_20245at 284.289 kb on + strand, within IAI47_20245at 284.310 kb on + strandat 284.313 kb on + strandat 284.314 kb on - strandat 284.314 kb on - strandat 284.314 kb on - strandat 284.365 kb on + strandat 284.365 kb on + strandat 284.366 kb on - strandat 284.378 kb on + strandat 284.378 kb on + strandat 284.378 kb on + strandat 284.378 kb on + strandat 284.379 kb on - strandat 284.379 kb on - strandat 284.379 kb on - strandat 284.381 kb on + strandat 284.382 kb on - strandat 284.382 kb on - strandat 284.418 kb on + strandat 284.418 kb on + strandat 284.418 kb on + strandat 284.511 kb on + strand, within IAI47_20250at 284.512 kb on - strand, within IAI47_20250at 284.512 kb on - strand, within IAI47_20250at 284.512 kb on - strand, within IAI47_20250at 284.512 kb on - strand, within IAI47_20250at 284.570 kb on - strandat 284.570 kb on - strandat 284.578 kb on + strandat 284.578 kb on + strandat 284.579 kb on - strandat 284.612 kb on + strandat 284.613 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep C; time point 1
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282,322 + IAI47_20235 0.36 -1.0
282,323 - IAI47_20235 0.36 +0.4
282,323 - IAI47_20235 0.36 -0.7
282,348 + IAI47_20235 0.38 -1.0
282,348 + IAI47_20235 0.38 -0.0
282,348 + IAI47_20235 0.38 +0.2
282,348 + IAI47_20235 0.38 +1.3
282,349 - IAI47_20235 0.38 -0.2
282,349 - IAI47_20235 0.38 +0.1
282,349 - IAI47_20235 0.38 -1.1
282,357 + IAI47_20235 0.39 +0.2
282,357 + IAI47_20235 0.39 -0.6
282,358 - IAI47_20235 0.39 +0.5
282,358 - IAI47_20235 0.39 +0.8
282,358 - IAI47_20235 0.39 -1.8
282,396 + IAI47_20235 0.42 +1.1
282,397 - IAI47_20235 0.42 -0.4
282,397 - IAI47_20235 0.42 -0.8
282,404 + IAI47_20235 0.43 -0.6
282,405 - IAI47_20235 0.43 +0.2
282,431 + IAI47_20235 0.45 -1.0
282,487 - IAI47_20235 0.50 -0.6
282,487 - IAI47_20235 0.50 +1.1
282,579 + IAI47_20235 0.57 +1.4
282,621 + IAI47_20235 0.60 -0.2
282,621 + IAI47_20235 0.60 -0.2
282,621 + IAI47_20235 0.60 -0.5
282,622 - IAI47_20235 0.60 +0.3
282,644 + IAI47_20235 0.62 +0.0
282,644 + IAI47_20235 0.62 +0.4
282,644 + IAI47_20235 0.62 -0.4
282,644 + IAI47_20235 0.62 +0.2
282,644 + IAI47_20235 0.62 +0.2
282,645 - IAI47_20235 0.62 +0.4
282,645 - IAI47_20235 0.62 -0.4
282,789 + IAI47_20235 0.74 +0.2
282,789 + IAI47_20235 0.74 +0.6
282,790 - IAI47_20235 0.74 -0.8
282,792 + IAI47_20235 0.74 -1.2
282,793 - IAI47_20235 0.74 -1.5
282,793 - IAI47_20235 0.74 +2.8
282,811 - IAI47_20235 0.76 +1.6
282,826 - IAI47_20235 0.77 -1.3
282,840 + IAI47_20235 0.78 +1.5
282,841 - IAI47_20235 0.78 -1.4
282,841 - IAI47_20235 0.78 -0.1
282,841 - IAI47_20235 0.78 +0.5
282,841 - IAI47_20235 0.78 -0.8
282,841 - IAI47_20235 0.78 +0.3
282,843 + IAI47_20235 0.78 +0.8
282,843 + IAI47_20235 0.78 +0.8
282,843 + IAI47_20235 0.78 +1.8
282,843 + IAI47_20235 0.78 -0.2
282,843 + IAI47_20235 0.78 +0.3
282,843 + IAI47_20235 0.78 -0.4
282,843 + IAI47_20235 0.78 -0.6
282,843 + IAI47_20235 0.78 +0.0
282,844 - IAI47_20235 0.78 -0.8
282,844 - IAI47_20235 0.78 -0.1
282,844 - IAI47_20235 0.78 +0.6
282,855 - IAI47_20235 0.79 -2.5
282,913 - IAI47_20235 0.84 -0.4
282,919 + IAI47_20235 0.84 +1.4
282,919 + IAI47_20235 0.84 -0.0
282,919 + IAI47_20235 0.84 -0.9
282,919 + IAI47_20235 0.84 -2.4
282,920 - IAI47_20235 0.84 +0.5
282,920 - IAI47_20235 0.84 -0.0
282,920 - IAI47_20235 0.84 -0.8
282,920 - IAI47_20235 0.84 +1.4
282,943 + IAI47_20235 0.86 +2.4
282,943 + IAI47_20235 0.86 -0.5
282,943 + IAI47_20235 0.86 -0.9
282,943 + IAI47_20235 0.86 +0.3
282,944 - IAI47_20235 0.86 +0.6
282,944 - IAI47_20235 0.86 -0.5
282,944 - IAI47_20235 0.86 -0.3
282,944 - IAI47_20235 0.86 +1.2
282,944 - IAI47_20235 0.86 -1.4
282,944 - IAI47_20235 0.86 +0.8
282,945 + IAI47_20235 0.86 +1.8
282,945 + IAI47_20235 0.86 -1.2
282,946 - IAI47_20235 0.86 +1.1
282,946 - IAI47_20235 0.86 -0.2
283,000 + -1.4
283,000 + -0.2
283,035 - +1.2
283,037 + +1.1
283,037 + -1.2
283,037 + -0.0
283,037 + -0.9
283,037 + -1.5
283,037 + +0.8
283,038 - -0.3
283,038 - +0.6
283,040 + -0.2
283,040 + +1.8
283,041 - +0.1
283,041 - -2.7
283,124 + -1.2
283,125 - +0.2
283,260 + IAI47_20240 0.14 +0.8
283,260 + IAI47_20240 0.14 +0.7
283,260 + IAI47_20240 0.14 +0.5
283,261 - IAI47_20240 0.14 -1.5
283,261 - IAI47_20240 0.14 +0.1
283,261 - IAI47_20240 0.14 +0.4
283,261 - IAI47_20240 0.14 +0.8
283,262 + IAI47_20240 0.14 -2.2
283,263 - IAI47_20240 0.14 -2.2
283,303 + IAI47_20240 0.21 -0.7
283,303 + IAI47_20240 0.21 +1.9
283,304 - IAI47_20240 0.21 -1.4
283,304 - IAI47_20240 0.21 -1.0
283,304 - IAI47_20240 0.21 +0.5
283,389 + IAI47_20240 0.37 +0.8
283,390 - IAI47_20240 0.37 -0.4
283,408 + IAI47_20240 0.40 -0.8
283,451 + IAI47_20240 0.48 -1.0
283,451 + IAI47_20240 0.48 -0.5
283,451 + IAI47_20240 0.48 -0.2
283,451 + IAI47_20240 0.48 -1.8
283,451 + IAI47_20240 0.48 -1.2
283,452 - IAI47_20240 0.48 -0.4
283,452 - IAI47_20240 0.48 -1.5
283,452 - IAI47_20240 0.48 +0.1
283,452 - IAI47_20240 0.48 +0.5
283,484 - IAI47_20240 0.54 -0.6
283,484 - IAI47_20240 0.54 +0.1
283,484 - IAI47_20240 0.54 -1.2
283,547 + IAI47_20240 0.65 +1.6
283,570 + IAI47_20240 0.69 -0.2
283,580 - IAI47_20240 0.71 -1.7
283,606 + IAI47_20240 0.76 +0.1
283,606 + IAI47_20240 0.76 -1.6
283,606 + IAI47_20240 0.76 +1.0
283,607 - IAI47_20240 0.76 +0.5
283,607 - IAI47_20240 0.76 -0.6
283,671 - IAI47_20240 0.88 +1.1
283,704 - +0.5
283,710 + -0.8
283,711 - +0.8
283,711 - +0.2
283,711 - -0.9
283,745 + +0.5
283,745 + +0.4
283,875 + IAI47_20245 0.23 +1.4
283,965 + IAI47_20245 0.37 -0.2
283,966 - IAI47_20245 0.37 -1.5
284,052 + IAI47_20245 0.51 +0.1
284,052 + IAI47_20245 0.51 -0.3
284,052 + IAI47_20245 0.51 +0.8
284,052 + IAI47_20245 0.51 -0.3
284,053 - IAI47_20245 0.51 +0.5
284,053 - IAI47_20245 0.51 -0.8
284,053 - IAI47_20245 0.51 -1.9
284,053 - IAI47_20245 0.51 +0.8
284,053 - IAI47_20245 0.51 +0.4
284,053 - IAI47_20245 0.51 -0.4
284,053 - IAI47_20245 0.51 -1.0
284,110 + IAI47_20245 0.60 +0.8
284,110 + IAI47_20245 0.60 -0.2
284,110 + IAI47_20245 0.60 +0.6
284,110 + IAI47_20245 0.60 -0.0
284,111 - IAI47_20245 0.60 +1.1
284,111 - IAI47_20245 0.60 +0.6
284,118 + IAI47_20245 0.61 +0.1
284,118 + IAI47_20245 0.61 -0.7
284,118 + IAI47_20245 0.61 +2.1
284,119 - IAI47_20245 0.61 -1.0
284,119 - IAI47_20245 0.61 -0.5
284,274 + IAI47_20245 0.85 +0.4
284,278 - IAI47_20245 0.86 +3.0
284,289 + IAI47_20245 0.88 -1.0
284,289 + IAI47_20245 0.88 +1.3
284,310 + +0.4
284,313 + -0.2
284,314 - -0.9
284,314 - +0.1
284,314 - -1.0
284,365 + -1.0
284,365 + +0.8
284,366 - +0.8
284,378 + -0.0
284,378 + -0.3
284,378 + -0.5
284,378 + +0.6
284,379 - -1.0
284,379 - +0.8
284,379 - +0.2
284,381 + -1.7
284,382 - -1.5
284,382 - -0.7
284,418 + -0.5
284,418 + +0.1
284,418 + -0.8
284,511 + IAI47_20250 0.57 -1.5
284,512 - IAI47_20250 0.57 +0.2
284,512 - IAI47_20250 0.57 +0.0
284,512 - IAI47_20250 0.57 +1.1
284,512 - IAI47_20250 0.57 -1.8
284,570 - -0.2
284,570 - +1.0
284,578 + -1.7
284,578 + -0.2
284,579 - -0.3
284,612 + -0.9
284,613 - -0.8

Or see this region's nucleotide sequence