Strain Fitness in Pantoea sp. MT58 around IAI47_19795

Experiment: Ying_AminoAcid20 rep C; time point 1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI47_19790 and IAI47_19795 are separated by 186 nucleotidesIAI47_19795 and IAI47_19800 are separated by 12 nucleotides IAI47_19790: IAI47_19790 - sigma-54-dependent Fis family transcriptional regulator, at 182,543 to 184,504 _19790 IAI47_19795: IAI47_19795 - sugar porter family MFS transporter, at 184,691 to 186,139 _19795 IAI47_19800: IAI47_19800 - Gfo/Idh/MocA family oxidoreductase, at 186,152 to 187,165 _19800 Position (kb) 184 185 186 187Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 183.702 kb on - strand, within IAI47_19790at 183.702 kb on - strand, within IAI47_19790at 183.721 kb on + strand, within IAI47_19790at 183.722 kb on - strand, within IAI47_19790at 183.775 kb on + strand, within IAI47_19790at 183.775 kb on + strand, within IAI47_19790at 183.776 kb on - strand, within IAI47_19790at 183.776 kb on - strand, within IAI47_19790at 183.776 kb on - strand, within IAI47_19790at 183.791 kb on - strand, within IAI47_19790at 183.857 kb on + strand, within IAI47_19790at 183.857 kb on + strand, within IAI47_19790at 183.858 kb on - strand, within IAI47_19790at 183.858 kb on - strand, within IAI47_19790at 183.956 kb on + strand, within IAI47_19790at 183.956 kb on + strand, within IAI47_19790at 183.957 kb on - strand, within IAI47_19790at 183.957 kb on - strand, within IAI47_19790at 183.957 kb on - strand, within IAI47_19790at 183.957 kb on - strand, within IAI47_19790at 183.957 kb on - strand, within IAI47_19790at 183.957 kb on - strand, within IAI47_19790at 183.976 kb on + strand, within IAI47_19790at 183.976 kb on + strand, within IAI47_19790at 183.976 kb on + strand, within IAI47_19790at 183.977 kb on - strand, within IAI47_19790at 183.980 kb on + strand, within IAI47_19790at 183.980 kb on + strand, within IAI47_19790at 183.980 kb on + strand, within IAI47_19790at 184.050 kb on + strand, within IAI47_19790at 184.050 kb on + strand, within IAI47_19790at 184.051 kb on - strand, within IAI47_19790at 184.051 kb on - strand, within IAI47_19790at 184.051 kb on - strand, within IAI47_19790at 184.051 kb on - strand, within IAI47_19790at 184.090 kb on + strand, within IAI47_19790at 184.090 kb on + strand, within IAI47_19790at 184.090 kb on + strand, within IAI47_19790at 184.090 kb on + strand, within IAI47_19790at 184.091 kb on - strand, within IAI47_19790at 184.091 kb on - strand, within IAI47_19790at 184.101 kb on - strand, within IAI47_19790at 184.118 kb on - strand, within IAI47_19790at 184.160 kb on + strand, within IAI47_19790at 184.160 kb on + strand, within IAI47_19790at 184.160 kb on + strand, within IAI47_19790at 184.160 kb on + strand, within IAI47_19790at 184.161 kb on - strand, within IAI47_19790at 184.161 kb on - strand, within IAI47_19790at 184.183 kb on + strand, within IAI47_19790at 184.183 kb on + strand, within IAI47_19790at 184.184 kb on - strand, within IAI47_19790at 184.201 kb on + strand, within IAI47_19790at 184.201 kb on + strand, within IAI47_19790at 184.201 kb on + strand, within IAI47_19790at 184.202 kb on - strand, within IAI47_19790at 184.203 kb on + strand, within IAI47_19790at 184.203 kb on + strand, within IAI47_19790at 184.204 kb on - strand, within IAI47_19790at 184.204 kb on - strand, within IAI47_19790at 184.299 kb on + strand, within IAI47_19790at 184.299 kb on + strand, within IAI47_19790at 184.300 kb on - strand, within IAI47_19790at 184.300 kb on - strand, within IAI47_19790at 184.300 kb on - strand, within IAI47_19790at 184.303 kb on + strand, within IAI47_19790at 184.303 kb on + strand, within IAI47_19790at 184.303 kb on + strand, within IAI47_19790at 184.304 kb on - strand, within IAI47_19790at 184.322 kb on - strandat 184.326 kb on + strandat 184.327 kb on - strandat 184.327 kb on - strandat 184.327 kb on - strandat 184.357 kb on + strandat 184.358 kb on - strandat 184.358 kb on - strandat 184.358 kb on - strandat 184.415 kb on + strandat 184.415 kb on + strandat 184.415 kb on + strandat 184.416 kb on - strandat 184.485 kb on - strandat 184.485 kb on - strandat 184.485 kb on - strandat 184.485 kb on - strandat 184.487 kb on + strandat 184.524 kb on - strandat 184.524 kb on - strandat 184.548 kb on - strandat 184.682 kb on + strandat 184.683 kb on - strandat 184.683 kb on - strandat 184.691 kb on - strandat 184.764 kb on - strandat 184.776 kb on + strandat 184.777 kb on - strandat 184.818 kb on + strandat 184.818 kb on + strandat 184.906 kb on + strand, within IAI47_19795at 184.907 kb on - strand, within IAI47_19795at 184.926 kb on + strand, within IAI47_19795at 184.926 kb on + strand, within IAI47_19795at 184.926 kb on + strand, within IAI47_19795at 184.926 kb on + strand, within IAI47_19795at 184.927 kb on - strand, within IAI47_19795at 185.048 kb on - strand, within IAI47_19795at 185.057 kb on + strand, within IAI47_19795at 185.144 kb on + strand, within IAI47_19795at 185.145 kb on - strand, within IAI47_19795at 185.145 kb on - strand, within IAI47_19795at 185.145 kb on - strand, within IAI47_19795at 185.145 kb on - strand, within IAI47_19795at 185.145 kb on - strand, within IAI47_19795at 185.146 kb on + strand, within IAI47_19795at 185.156 kb on + strand, within IAI47_19795at 185.244 kb on + strand, within IAI47_19795at 185.244 kb on + strand, within IAI47_19795at 185.244 kb on + strand, within IAI47_19795at 185.244 kb on + strand, within IAI47_19795at 185.244 kb on + strand, within IAI47_19795at 185.244 kb on + strand, within IAI47_19795at 185.368 kb on - strand, within IAI47_19795at 185.368 kb on - strand, within IAI47_19795at 185.447 kb on + strand, within IAI47_19795at 185.447 kb on + strand, within IAI47_19795at 185.448 kb on - strand, within IAI47_19795at 185.448 kb on - strand, within IAI47_19795at 185.448 kb on - strand, within IAI47_19795at 185.448 kb on - strand, within IAI47_19795at 185.448 kb on - strand, within IAI47_19795at 185.448 kb on - strand, within IAI47_19795at 185.448 kb on - strand, within IAI47_19795at 185.448 kb on - strand, within IAI47_19795at 185.448 kb on - strand, within IAI47_19795at 185.449 kb on + strand, within IAI47_19795at 185.449 kb on + strand, within IAI47_19795at 185.449 kb on + strand, within IAI47_19795at 185.450 kb on - strand, within IAI47_19795at 185.476 kb on + strand, within IAI47_19795at 185.514 kb on - strand, within IAI47_19795at 185.514 kb on - strand, within IAI47_19795at 185.532 kb on + strand, within IAI47_19795at 185.533 kb on - strand, within IAI47_19795at 185.623 kb on + strand, within IAI47_19795at 185.624 kb on - strand, within IAI47_19795at 185.686 kb on + strand, within IAI47_19795at 185.686 kb on + strand, within IAI47_19795at 185.686 kb on + strand, within IAI47_19795at 185.687 kb on - strand, within IAI47_19795at 185.687 kb on - strand, within IAI47_19795at 185.711 kb on - strand, within IAI47_19795at 185.711 kb on - strand, within IAI47_19795at 185.711 kb on - strand, within IAI47_19795at 185.766 kb on + strand, within IAI47_19795at 185.767 kb on - strand, within IAI47_19795at 185.767 kb on - strand, within IAI47_19795at 185.821 kb on + strand, within IAI47_19795at 185.867 kb on + strand, within IAI47_19795at 185.867 kb on + strand, within IAI47_19795at 185.867 kb on + strand, within IAI47_19795at 185.868 kb on - strand, within IAI47_19795at 185.868 kb on - strand, within IAI47_19795at 185.876 kb on - strand, within IAI47_19795at 185.881 kb on + strand, within IAI47_19795at 185.882 kb on - strand, within IAI47_19795at 185.961 kb on + strand, within IAI47_19795at 185.962 kb on - strand, within IAI47_19795at 185.962 kb on - strand, within IAI47_19795at 185.962 kb on - strand, within IAI47_19795at 185.962 kb on - strand, within IAI47_19795at 186.137 kb on + strandat 186.138 kb on - strandat 186.140 kb on + strandat 186.140 kb on + strandat 186.168 kb on + strandat 186.169 kb on - strandat 186.320 kb on + strand, within IAI47_19800at 186.320 kb on + strand, within IAI47_19800at 186.323 kb on - strand, within IAI47_19800at 186.451 kb on + strand, within IAI47_19800at 186.452 kb on - strand, within IAI47_19800at 186.452 kb on - strand, within IAI47_19800at 186.517 kb on - strand, within IAI47_19800at 186.529 kb on + strand, within IAI47_19800at 186.604 kb on + strand, within IAI47_19800at 186.605 kb on - strand, within IAI47_19800at 186.702 kb on + strand, within IAI47_19800at 186.740 kb on + strand, within IAI47_19800at 186.775 kb on + strand, within IAI47_19800at 186.781 kb on + strand, within IAI47_19800at 186.796 kb on + strand, within IAI47_19800at 186.797 kb on - strand, within IAI47_19800at 186.812 kb on - strand, within IAI47_19800at 186.812 kb on - strand, within IAI47_19800at 186.832 kb on + strand, within IAI47_19800at 186.838 kb on + strand, within IAI47_19800at 186.838 kb on + strand, within IAI47_19800at 186.839 kb on - strand, within IAI47_19800at 186.839 kb on - strand, within IAI47_19800at 186.839 kb on - strand, within IAI47_19800at 186.840 kb on + strand, within IAI47_19800at 186.840 kb on + strand, within IAI47_19800at 186.841 kb on - strand, within IAI47_19800at 186.866 kb on + strand, within IAI47_19800at 186.866 kb on + strand, within IAI47_19800at 186.866 kb on + strand, within IAI47_19800at 186.867 kb on - strand, within IAI47_19800at 186.867 kb on - strand, within IAI47_19800at 186.872 kb on + strand, within IAI47_19800at 186.872 kb on + strand, within IAI47_19800at 186.950 kb on + strand, within IAI47_19800at 186.951 kb on - strand, within IAI47_19800at 186.976 kb on + strand, within IAI47_19800at 186.977 kb on - strand, within IAI47_19800at 187.013 kb on + strand, within IAI47_19800at 187.013 kb on + strand, within IAI47_19800at 187.013 kb on + strand, within IAI47_19800at 187.013 kb on + strand, within IAI47_19800at 187.013 kb on + strand, within IAI47_19800at 187.013 kb on + strand, within IAI47_19800at 187.014 kb on - strand, within IAI47_19800at 187.014 kb on - strand, within IAI47_19800at 187.014 kb on - strand, within IAI47_19800at 187.014 kb on - strand, within IAI47_19800at 187.014 kb on - strand, within IAI47_19800at 187.014 kb on - strand, within IAI47_19800at 187.014 kb on - strand, within IAI47_19800at 187.128 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep C; time point 1
remove
183,702 - IAI47_19790 0.59 -1.9
183,702 - IAI47_19790 0.59 -1.0
183,721 + IAI47_19790 0.60 +0.3
183,722 - IAI47_19790 0.60 -1.1
183,775 + IAI47_19790 0.63 +0.5
183,775 + IAI47_19790 0.63 +1.0
183,776 - IAI47_19790 0.63 +0.4
183,776 - IAI47_19790 0.63 -0.5
183,776 - IAI47_19790 0.63 +0.8
183,791 - IAI47_19790 0.64 -1.2
183,857 + IAI47_19790 0.67 -1.8
183,857 + IAI47_19790 0.67 -0.0
183,858 - IAI47_19790 0.67 -0.6
183,858 - IAI47_19790 0.67 -1.1
183,956 + IAI47_19790 0.72 +1.3
183,956 + IAI47_19790 0.72 +1.8
183,957 - IAI47_19790 0.72 -0.9
183,957 - IAI47_19790 0.72 +0.1
183,957 - IAI47_19790 0.72 +0.4
183,957 - IAI47_19790 0.72 +1.2
183,957 - IAI47_19790 0.72 +0.8
183,957 - IAI47_19790 0.72 -0.2
183,976 + IAI47_19790 0.73 -0.2
183,976 + IAI47_19790 0.73 -2.2
183,976 + IAI47_19790 0.73 +0.5
183,977 - IAI47_19790 0.73 -1.5
183,980 + IAI47_19790 0.73 +0.5
183,980 + IAI47_19790 0.73 +0.1
183,980 + IAI47_19790 0.73 -0.0
184,050 + IAI47_19790 0.77 +0.8
184,050 + IAI47_19790 0.77 +0.8
184,051 - IAI47_19790 0.77 +2.4
184,051 - IAI47_19790 0.77 -0.1
184,051 - IAI47_19790 0.77 -0.0
184,051 - IAI47_19790 0.77 -0.8
184,090 + IAI47_19790 0.79 -0.3
184,090 + IAI47_19790 0.79 -0.5
184,090 + IAI47_19790 0.79 -0.3
184,090 + IAI47_19790 0.79 -1.0
184,091 - IAI47_19790 0.79 -1.2
184,091 - IAI47_19790 0.79 +0.0
184,101 - IAI47_19790 0.79 -0.3
184,118 - IAI47_19790 0.80 -2.2
184,160 + IAI47_19790 0.82 -1.2
184,160 + IAI47_19790 0.82 -0.2
184,160 + IAI47_19790 0.82 +0.2
184,160 + IAI47_19790 0.82 -0.5
184,161 - IAI47_19790 0.82 +2.4
184,161 - IAI47_19790 0.82 -1.4
184,183 + IAI47_19790 0.84 +0.1
184,183 + IAI47_19790 0.84 -0.6
184,184 - IAI47_19790 0.84 +2.4
184,201 + IAI47_19790 0.85 -0.8
184,201 + IAI47_19790 0.85 +4.0
184,201 + IAI47_19790 0.85 -0.2
184,202 - IAI47_19790 0.85 +0.6
184,203 + IAI47_19790 0.85 +1.2
184,203 + IAI47_19790 0.85 -2.8
184,204 - IAI47_19790 0.85 -1.8
184,204 - IAI47_19790 0.85 -0.3
184,299 + IAI47_19790 0.90 +2.0
184,299 + IAI47_19790 0.90 -0.3
184,300 - IAI47_19790 0.90 -0.2
184,300 - IAI47_19790 0.90 +1.0
184,300 - IAI47_19790 0.90 -0.1
184,303 + IAI47_19790 0.90 +1.0
184,303 + IAI47_19790 0.90 +1.8
184,303 + IAI47_19790 0.90 +0.2
184,304 - IAI47_19790 0.90 +0.4
184,322 - +1.1
184,326 + +0.3
184,327 - -0.5
184,327 - +1.8
184,327 - -0.4
184,357 + +0.4
184,358 - -2.5
184,358 - -0.9
184,358 - +0.8
184,415 + -2.5
184,415 + +0.1
184,415 + +0.2
184,416 - -0.3
184,485 - -0.5
184,485 - -0.2
184,485 - -0.5
184,485 - +1.6
184,487 + +1.0
184,524 - -0.8
184,524 - -0.2
184,548 - -1.3
184,682 + +0.2
184,683 - +1.1
184,683 - +0.2
184,691 - -0.2
184,764 - -0.1
184,776 + +0.3
184,777 - -1.1
184,818 + +0.4
184,818 + -0.6
184,906 + IAI47_19795 0.15 +0.5
184,907 - IAI47_19795 0.15 -0.4
184,926 + IAI47_19795 0.16 -0.2
184,926 + IAI47_19795 0.16 -1.2
184,926 + IAI47_19795 0.16 -1.1
184,926 + IAI47_19795 0.16 +3.6
184,927 - IAI47_19795 0.16 +0.5
185,048 - IAI47_19795 0.25 +1.8
185,057 + IAI47_19795 0.25 -0.0
185,144 + IAI47_19795 0.31 -1.1
185,145 - IAI47_19795 0.31 +0.8
185,145 - IAI47_19795 0.31 -0.3
185,145 - IAI47_19795 0.31 -0.4
185,145 - IAI47_19795 0.31 +0.7
185,145 - IAI47_19795 0.31 +0.8
185,146 + IAI47_19795 0.31 -0.2
185,156 + IAI47_19795 0.32 +0.1
185,244 + IAI47_19795 0.38 +0.4
185,244 + IAI47_19795 0.38 -2.3
185,244 + IAI47_19795 0.38 +0.0
185,244 + IAI47_19795 0.38 -0.2
185,244 + IAI47_19795 0.38 +1.8
185,244 + IAI47_19795 0.38 -1.0
185,368 - IAI47_19795 0.47 +0.0
185,368 - IAI47_19795 0.47 -0.3
185,447 + IAI47_19795 0.52 -0.6
185,447 + IAI47_19795 0.52 +1.1
185,448 - IAI47_19795 0.52 +0.0
185,448 - IAI47_19795 0.52 +0.4
185,448 - IAI47_19795 0.52 +0.2
185,448 - IAI47_19795 0.52 +0.2
185,448 - IAI47_19795 0.52 -1.3
185,448 - IAI47_19795 0.52 +0.5
185,448 - IAI47_19795 0.52 +0.3
185,448 - IAI47_19795 0.52 +0.5
185,448 - IAI47_19795 0.52 -0.2
185,449 + IAI47_19795 0.52 +0.2
185,449 + IAI47_19795 0.52 -0.3
185,449 + IAI47_19795 0.52 -0.6
185,450 - IAI47_19795 0.52 +0.3
185,476 + IAI47_19795 0.54 +0.8
185,514 - IAI47_19795 0.57 -1.2
185,514 - IAI47_19795 0.57 +0.8
185,532 + IAI47_19795 0.58 -0.7
185,533 - IAI47_19795 0.58 -0.0
185,623 + IAI47_19795 0.64 +0.2
185,624 - IAI47_19795 0.64 -0.6
185,686 + IAI47_19795 0.69 +0.8
185,686 + IAI47_19795 0.69 -0.8
185,686 + IAI47_19795 0.69 +1.0
185,687 - IAI47_19795 0.69 +1.0
185,687 - IAI47_19795 0.69 -0.5
185,711 - IAI47_19795 0.70 +1.6
185,711 - IAI47_19795 0.70 -1.8
185,711 - IAI47_19795 0.70 -0.8
185,766 + IAI47_19795 0.74 -0.8
185,767 - IAI47_19795 0.74 -0.2
185,767 - IAI47_19795 0.74 -1.4
185,821 + IAI47_19795 0.78 -1.3
185,867 + IAI47_19795 0.81 +1.2
185,867 + IAI47_19795 0.81 -0.2
185,867 + IAI47_19795 0.81 -1.3
185,868 - IAI47_19795 0.81 -0.6
185,868 - IAI47_19795 0.81 +0.5
185,876 - IAI47_19795 0.82 +0.8
185,881 + IAI47_19795 0.82 +1.0
185,882 - IAI47_19795 0.82 +2.3
185,961 + IAI47_19795 0.88 -1.5
185,962 - IAI47_19795 0.88 -1.8
185,962 - IAI47_19795 0.88 +0.4
185,962 - IAI47_19795 0.88 -0.6
185,962 - IAI47_19795 0.88 +0.3
186,137 + -1.0
186,138 - -0.8
186,140 + +2.1
186,140 + +0.2
186,168 + +0.2
186,169 - -1.2
186,320 + IAI47_19800 0.17 -0.3
186,320 + IAI47_19800 0.17 +0.1
186,323 - IAI47_19800 0.17 -1.9
186,451 + IAI47_19800 0.29 +0.5
186,452 - IAI47_19800 0.30 -1.1
186,452 - IAI47_19800 0.30 +0.8
186,517 - IAI47_19800 0.36 +0.6
186,529 + IAI47_19800 0.37 +0.8
186,604 + IAI47_19800 0.45 +0.6
186,605 - IAI47_19800 0.45 -0.2
186,702 + IAI47_19800 0.54 -0.7
186,740 + IAI47_19800 0.58 -0.0
186,775 + IAI47_19800 0.61 +0.6
186,781 + IAI47_19800 0.62 +0.0
186,796 + IAI47_19800 0.64 +0.6
186,797 - IAI47_19800 0.64 -0.1
186,812 - IAI47_19800 0.65 +0.1
186,812 - IAI47_19800 0.65 +0.0
186,832 + IAI47_19800 0.67 +0.4
186,838 + IAI47_19800 0.68 +0.2
186,838 + IAI47_19800 0.68 +2.8
186,839 - IAI47_19800 0.68 +1.0
186,839 - IAI47_19800 0.68 +1.1
186,839 - IAI47_19800 0.68 -0.3
186,840 + IAI47_19800 0.68 -0.2
186,840 + IAI47_19800 0.68 +0.6
186,841 - IAI47_19800 0.68 +0.3
186,866 + IAI47_19800 0.70 +1.4
186,866 + IAI47_19800 0.70 -0.1
186,866 + IAI47_19800 0.70 -1.4
186,867 - IAI47_19800 0.71 +0.1
186,867 - IAI47_19800 0.71 -0.4
186,872 + IAI47_19800 0.71 +0.8
186,872 + IAI47_19800 0.71 -1.0
186,950 + IAI47_19800 0.79 -1.4
186,951 - IAI47_19800 0.79 -1.2
186,976 + IAI47_19800 0.81 +0.1
186,977 - IAI47_19800 0.81 -0.3
187,013 + IAI47_19800 0.85 -0.2
187,013 + IAI47_19800 0.85 -0.2
187,013 + IAI47_19800 0.85 +0.9
187,013 + IAI47_19800 0.85 +0.0
187,013 + IAI47_19800 0.85 +0.8
187,013 + IAI47_19800 0.85 -0.1
187,014 - IAI47_19800 0.85 +0.6
187,014 - IAI47_19800 0.85 +0.2
187,014 - IAI47_19800 0.85 +0.0
187,014 - IAI47_19800 0.85 -0.1
187,014 - IAI47_19800 0.85 -0.1
187,014 - IAI47_19800 0.85 +0.1
187,014 - IAI47_19800 0.85 +0.1
187,128 + +0.2

Or see this region's nucleotide sequence