Strain Fitness in Pantoea sp. MT58 around IAI47_08965

Experiment: Ying_AminoAcid20 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep C; time point 1
1,893,336	+		IAI47_08955	0.17	-1.1
1,893,368	+		IAI47_08955	0.28	-0.1
1,893,368	+		IAI47_08955	0.28	-1.5
1,893,368	+		IAI47_08955	0.28	-1.7
1,893,368	+		IAI47_08955	0.28	-1.1
1,893,369	-		IAI47_08955	0.29	-0.6
1,893,369	-		IAI47_08955	0.29	-0.6
1,893,427	+		IAI47_08955	0.49	-1.1
1,893,428	-		IAI47_08955	0.50	-0.0
1,893,467	+		IAI47_08955	0.63	-0.4
1,893,467	+		IAI47_08955	0.63	+0.4
1,893,467	+		IAI47_08955	0.63	-0.3
1,893,467	+		IAI47_08955	0.63	-1.9
1,893,467	+		IAI47_08955	0.63	-1.5
1,893,467	+		IAI47_08955	0.63	+0.5
1,893,467	+		IAI47_08955	0.63	+0.0
1,893,467	+		IAI47_08955	0.63	-0.9
1,893,467	+		IAI47_08955	0.63	-1.4
1,893,467	+		IAI47_08955	0.63	-0.3
1,893,468	-		IAI47_08955	0.64	+1.1
1,893,468	-		IAI47_08955	0.64	+1.1
1,893,468	-		IAI47_08955	0.64	+1.9
1,893,468	-		IAI47_08955	0.64	+1.2
1,893,468	-		IAI47_08955	0.64	+1.1
1,893,468	-		IAI47_08955	0.64	-2.4
1,893,468	-		IAI47_08955	0.64	-0.9
1,893,468	-		IAI47_08955	0.64	+0.4
1,893,468	-		IAI47_08955	0.64	-0.3
1,893,468	-		IAI47_08955	0.64	-0.5
1,893,468	-		IAI47_08955	0.64	-1.3
1,893,468	-		IAI47_08955	0.64	-0.6
1,893,468	-		IAI47_08955	0.64	-0.5
1,893,547	+				+0.2
1,893,548	-				-1.1
1,893,548	-				+0.1
1,893,567	+				-2.6
1,893,568	-				-0.8
1,893,582	-				-0.7
1,893,582	-				-1.9
1,893,582	-				+1.3
1,893,604	+				+1.1
1,893,620	+				+0.5
1,893,738	+		IAI47_08960	0.21	-0.5
1,893,738	+		IAI47_08960	0.21	+1.9
1,893,739	-		IAI47_08960	0.21	+0.0
1,893,743	+		IAI47_08960	0.22	-0.7
1,893,744	-		IAI47_08960	0.22	+0.2
1,893,744	-		IAI47_08960	0.22	-0.4
1,893,745	+		IAI47_08960	0.22	-0.4
1,893,745	+		IAI47_08960	0.22	-0.7
1,893,745	+		IAI47_08960	0.22	-0.1
1,893,746	-		IAI47_08960	0.22	-0.3
1,893,746	-		IAI47_08960	0.22	-0.6
1,893,758	-		IAI47_08960	0.24	-0.3
1,893,758	-		IAI47_08960	0.24	-0.1
1,893,862	+		IAI47_08960	0.42	+0.7
1,893,862	+		IAI47_08960	0.42	-0.4
1,893,862	+		IAI47_08960	0.42	+0.2
1,893,863	-		IAI47_08960	0.42	+0.1
1,893,863	-		IAI47_08960	0.42	+0.1
1,893,863	-		IAI47_08960	0.42	-0.5
1,893,863	-		IAI47_08960	0.42	+1.1
1,893,863	-		IAI47_08960	0.42	+1.3
1,893,960	-		IAI47_08960	0.58	+2.2
1,893,960	-		IAI47_08960	0.58	+0.5
1,893,997	-		IAI47_08960	0.64	-1.1
1,893,997	-		IAI47_08960	0.64	-1.5
1,894,012	+		IAI47_08960	0.66	-2.4
1,894,012	+		IAI47_08960	0.66	+0.3
1,894,191	-				-1.1
1,894,196	+				-0.1
1,894,196	+				-1.0
1,894,196	+				-0.1
1,894,197	-				+1.2
1,894,218	+				-0.6
1,894,219	-				+0.9
1,894,219	-				+0.3
1,894,219	-				-0.1
1,894,219	-				+1.1
1,894,322	-				-0.1
1,894,347	+		IAI47_08965	0.11	-0.8
1,894,347	+		IAI47_08965	0.11	-1.7
1,894,348	-		IAI47_08965	0.11	-0.3
1,894,348	-		IAI47_08965	0.11	-0.7
1,894,367	-		IAI47_08965	0.13	-1.1
1,894,367	-		IAI47_08965	0.13	-1.7
1,894,367	-		IAI47_08965	0.13	-0.9
1,894,400	+		IAI47_08965	0.16	+1.3
1,894,410	+		IAI47_08965	0.17	-0.1
1,894,411	-		IAI47_08965	0.17	+0.1
1,894,428	+		IAI47_08965	0.19	-0.1
1,894,428	+		IAI47_08965	0.19	+0.1
1,894,429	-		IAI47_08965	0.19	+0.2
1,894,429	-		IAI47_08965	0.19	-0.1
1,894,429	-		IAI47_08965	0.19	-1.5
1,894,429	-		IAI47_08965	0.19	-1.5
1,894,512	+		IAI47_08965	0.27	-1.0
1,894,523	+		IAI47_08965	0.29	-0.9
1,894,523	+		IAI47_08965	0.29	-1.2
1,894,524	-		IAI47_08965	0.29	+0.1
1,894,567	-		IAI47_08965	0.33	-0.9
1,894,567	-		IAI47_08965	0.33	-1.5
1,894,567	-		IAI47_08965	0.33	-2.5
1,894,595	+		IAI47_08965	0.36	+0.6
1,894,595	+		IAI47_08965	0.36	-1.5
1,894,595	+		IAI47_08965	0.36	+0.0
1,894,596	-		IAI47_08965	0.36	+0.4
1,894,596	-		IAI47_08965	0.36	-0.9
1,894,596	-		IAI47_08965	0.36	-0.8
1,894,596	-		IAI47_08965	0.36	-0.1
1,894,596	-		IAI47_08965	0.36	-0.4
1,894,614	+		IAI47_08965	0.37	-1.0
1,894,614	+		IAI47_08965	0.37	+0.5
1,894,615	-		IAI47_08965	0.38	+0.1
1,894,626	+		IAI47_08965	0.39	-1.5
1,894,674	+		IAI47_08965	0.43	-0.3
1,894,674	+		IAI47_08965	0.43	-2.3
1,894,675	-		IAI47_08965	0.43	-2.5
1,894,675	-		IAI47_08965	0.43	-0.9
1,894,675	-		IAI47_08965	0.43	+0.3
1,894,675	-		IAI47_08965	0.43	-1.8
1,894,675	-		IAI47_08965	0.43	+0.3
1,894,690	-		IAI47_08965	0.45	+0.2
1,894,690	-		IAI47_08965	0.45	-1.4
1,894,740	+		IAI47_08965	0.50	+0.6
1,894,740	+		IAI47_08965	0.50	-0.9
1,894,741	-		IAI47_08965	0.50	+0.9
1,894,741	-		IAI47_08965	0.50	-2.6
1,894,741	-		IAI47_08965	0.50	-0.4
1,894,741	-		IAI47_08965	0.50	-0.4
1,894,767	+		IAI47_08965	0.53	-1.4
1,894,767	+		IAI47_08965	0.53	-1.3
1,894,768	-		IAI47_08965	0.53	-1.5
1,894,795	-		IAI47_08965	0.55	-1.9
1,894,795	-		IAI47_08965	0.55	-0.1
1,894,807	+		IAI47_08965	0.57	-0.5
1,894,807	+		IAI47_08965	0.57	-2.8
1,894,807	+		IAI47_08965	0.57	-2.2
1,894,807	+		IAI47_08965	0.57	-0.9
1,894,808	-		IAI47_08965	0.57	+0.4
1,894,808	-		IAI47_08965	0.57	+0.3
1,894,827	+		IAI47_08965	0.58	-0.3
1,894,828	-		IAI47_08965	0.59	-2.8
1,894,838	+		IAI47_08965	0.60	-0.5
1,894,838	+		IAI47_08965	0.60	-1.1
1,894,838	+		IAI47_08965	0.60	-1.7
1,894,920	+		IAI47_08965	0.68	-2.9
1,894,938	+		IAI47_08965	0.69	-1.1
1,894,938	+		IAI47_08965	0.69	-0.5
1,894,938	+		IAI47_08965	0.69	-2.0
1,894,939	-		IAI47_08965	0.70	-0.3
1,895,026	-		IAI47_08965	0.78	-0.8
1,895,026	-		IAI47_08965	0.78	+0.2
1,895,037	+		IAI47_08965	0.79	+0.3
1,895,037	+		IAI47_08965	0.79	-0.1
1,895,038	-		IAI47_08965	0.79	-1.0
1,895,038	-		IAI47_08965	0.79	-0.3
1,895,038	-		IAI47_08965	0.79	-2.7
1,895,087	+		IAI47_08965	0.84	-2.3
1,895,097	+		IAI47_08965	0.85	+0.7
1,895,175	+				-2.1
1,895,175	+				-1.9
1,895,175	+				-1.3
1,895,176	-				-0.7
1,895,177	+				-1.4
1,895,178	-				-0.0
1,895,178	-				-2.7
1,895,199	+				-2.5
1,895,219	+				-0.1
1,895,219	+				-1.5
1,895,220	-				-0.9
1,895,220	-				-1.1
1,895,220	-				-0.3
1,895,220	-				-0.1
1,895,221	-				-0.1
1,895,224	+				-1.3
1,895,224	+				-0.9
1,895,224	+				-0.6
1,895,225	-				-1.5
1,895,225	-				-0.7
1,895,225	-				-0.6
1,895,225	-				+0.3
1,895,225	-				-0.9
1,895,225	-				-1.6
1,895,228	+				-1.9
1,895,228	+				-1.9
1,895,228	+				-1.6
1,895,228	+				-0.5
1,895,228	+				-1.4
1,895,228	+				-1.8
1,895,228	+				-0.4
1,895,228	+				-1.1
1,895,228	+				-0.0
1,895,228	+				-1.5
1,895,228	+				-0.8
1,895,229	-				-2.0
1,895,229	-				-0.7
1,895,229	-				-2.1
1,895,229	-				-1.1
1,895,229	-				-1.0
1,895,229	-				+0.0
1,895,229	-				-1.3
1,895,229	-				-0.8
1,895,229	-				-0.6
1,895,229	-				-0.5
1,895,232	+				-0.1
1,895,233	-				-1.8
1,895,233	-				-0.4
1,895,233	-				-1.6
1,895,233	-				-0.1
1,895,268	+				+0.0
1,895,268	+				-0.2
1,895,280	+				+0.3
1,895,280	+				-2.8
1,895,280	+				-0.5
1,895,280	+				-2.8
1,895,280	+				-1.3
1,895,280	+				+0.9
1,895,280	+				-1.7
1,895,281	-				+0.3
1,895,281	-				-0.3
1,895,281	-				-1.6
1,895,281	-				+2.6
1,895,282	+				-1.1
1,895,283	-				-1.9
1,895,334	+				+0.3
1,895,335	-				+0.9
1,895,515	+				+0.7
1,895,515	+				-0.0
1,895,515	+				-0.6
1,895,516	-				-0.1
1,895,554	+		IAI47_08970	0.12	+0.1
1,895,554	+		IAI47_08970	0.12	+0.2
1,895,554	+		IAI47_08970	0.12	+0.0
1,895,555	-		IAI47_08970	0.12	+0.2
1,895,555	-		IAI47_08970	0.12	-0.1
1,895,555	-		IAI47_08970	0.12	-2.1
1,895,555	-		IAI47_08970	0.12	-2.6
1,895,560	+		IAI47_08970	0.12	+0.4
1,895,797	+		IAI47_08970	0.25	+0.7
1,895,798	-		IAI47_08970	0.25	-0.6
1,895,798	-		IAI47_08970	0.25	-0.5
1,895,798	-		IAI47_08970	0.25	-1.0
1,895,804	-		IAI47_08970	0.25	-0.3
1,895,872	+		IAI47_08970	0.29	-0.5
1,895,872	+		IAI47_08970	0.29	+0.3
1,895,872	+		IAI47_08970	0.29	+0.6
1,895,873	-		IAI47_08970	0.29	-1.7
1,895,873	-		IAI47_08970	0.29	+2.2
1,895,890	+		IAI47_08970	0.30	-0.3
1,895,890	+		IAI47_08970	0.30	-0.6
1,895,891	-		IAI47_08970	0.30	+0.9
1,895,931	+		IAI47_08970	0.32	+0.7
1,895,931	+		IAI47_08970	0.32	-1.3
1,895,931	+		IAI47_08970	0.32	-0.1
1,895,931	+		IAI47_08970	0.32	+0.4
1,895,931	+		IAI47_08970	0.32	+0.5
1,895,931	+		IAI47_08970	0.32	+0.1
1,895,932	-		IAI47_08970	0.32	+0.1
1,895,932	-		IAI47_08970	0.32	+0.3
1,895,932	-		IAI47_08970	0.32	-0.7
1,895,955	+		IAI47_08970	0.33	+1.0
1,895,955	+		IAI47_08970	0.33	-1.5
1,895,975	-		IAI47_08970	0.34	-0.7
1,896,074	+		IAI47_08970	0.40	+0.7
1,896,136	+		IAI47_08970	0.43	+0.1
1,896,137	-		IAI47_08970	0.43	+1.4
1,896,247	-		IAI47_08970	0.49	-0.5