Strain Fitness in Pantoea sp. MT58 around IAI47_03950

Experiment: Ying_AminoAcid20 rep C; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_03935 and IAI47_03940 overlap by 4 nucleotidesIAI47_03940 and IAI47_03945 overlap by 4 nucleotidesIAI47_03945 and IAI47_03950 overlap by 50 nucleotidesIAI47_03950 and IAI47_03955 are separated by 101 nucleotides IAI47_03935: IAI47_03935 - prepilin-type N-terminal cleavage/methylation domain-containing protein, at 820,504 to 820,974 _03935 IAI47_03940: IAI47_03940 - prepilin peptidase-dependent protein, at 820,971 to 821,498 _03940 IAI47_03945: IAI47_03945 - DUF2509 family protein, at 821,495 to 821,899 _03945 IAI47_03950: IAI47_03950 - prepilin-type N-terminal cleavage/methylation domain-containing protein, at 821,850 to 822,185 _03950 IAI47_03955: IAI47_03955 - exodeoxyribonuclease V subunit gamma, at 822,287 to 825,664 _03955 Position (kb) 821 822 823Strain fitness (log2 ratio) -2 -1 0 1 2at 820.907 kb on + strand, within IAI47_03935at 820.907 kb on + strand, within IAI47_03935at 820.907 kb on + strand, within IAI47_03935at 820.908 kb on - strand, within IAI47_03935at 820.908 kb on - strand, within IAI47_03935at 820.908 kb on - strand, within IAI47_03935at 820.918 kb on - strand, within IAI47_03935at 820.918 kb on - strand, within IAI47_03935at 820.918 kb on - strand, within IAI47_03935at 820.918 kb on - strand, within IAI47_03935at 820.918 kb on - strand, within IAI47_03935at 820.918 kb on - strand, within IAI47_03935at 820.918 kb on - strand, within IAI47_03935at 821.116 kb on + strand, within IAI47_03940at 821.117 kb on - strand, within IAI47_03940at 821.117 kb on - strand, within IAI47_03940at 821.117 kb on - strand, within IAI47_03940at 821.164 kb on - strand, within IAI47_03940at 821.164 kb on - strand, within IAI47_03940at 821.280 kb on + strand, within IAI47_03940at 821.280 kb on + strand, within IAI47_03940at 821.281 kb on - strand, within IAI47_03940at 821.281 kb on - strand, within IAI47_03940at 821.281 kb on - strand, within IAI47_03940at 821.281 kb on - strand, within IAI47_03940at 821.283 kb on + strand, within IAI47_03940at 821.283 kb on + strand, within IAI47_03940at 821.283 kb on + strand, within IAI47_03940at 821.283 kb on + strand, within IAI47_03940at 821.283 kb on + strand, within IAI47_03940at 821.283 kb on + strand, within IAI47_03940at 821.283 kb on + strand, within IAI47_03940at 821.283 kb on + strand, within IAI47_03940at 821.284 kb on - strand, within IAI47_03940at 821.284 kb on - strand, within IAI47_03940at 821.284 kb on - strand, within IAI47_03940at 821.284 kb on - strand, within IAI47_03940at 821.378 kb on + strand, within IAI47_03940at 821.378 kb on + strand, within IAI47_03940at 821.428 kb on + strand, within IAI47_03940at 821.428 kb on + strand, within IAI47_03940at 821.428 kb on + strand, within IAI47_03940at 821.429 kb on - strand, within IAI47_03940at 821.429 kb on - strand, within IAI47_03940at 821.533 kb on - strandat 821.539 kb on + strand, within IAI47_03945at 821.539 kb on + strand, within IAI47_03945at 821.539 kb on + strand, within IAI47_03945at 821.539 kb on + strand, within IAI47_03945at 821.539 kb on + strand, within IAI47_03945at 821.539 kb on + strand, within IAI47_03945at 821.539 kb on + strand, within IAI47_03945at 821.540 kb on - strand, within IAI47_03945at 821.540 kb on - strand, within IAI47_03945at 821.540 kb on - strand, within IAI47_03945at 821.557 kb on + strand, within IAI47_03945at 821.558 kb on - strand, within IAI47_03945at 821.739 kb on + strand, within IAI47_03945at 821.739 kb on + strand, within IAI47_03945at 821.740 kb on - strand, within IAI47_03945at 821.740 kb on - strand, within IAI47_03945at 821.740 kb on - strand, within IAI47_03945at 821.770 kb on + strand, within IAI47_03945at 821.771 kb on - strand, within IAI47_03945at 821.864 kb on + strandat 821.864 kb on + strandat 821.865 kb on - strandat 821.897 kb on + strandat 821.897 kb on + strandat 821.944 kb on + strand, within IAI47_03950at 821.944 kb on + strand, within IAI47_03950at 821.953 kb on + strand, within IAI47_03950at 821.953 kb on + strand, within IAI47_03950at 821.954 kb on - strand, within IAI47_03950at 821.954 kb on - strand, within IAI47_03950at 821.954 kb on - strand, within IAI47_03950at 821.954 kb on - strand, within IAI47_03950at 821.976 kb on + strand, within IAI47_03950at 821.976 kb on + strand, within IAI47_03950at 821.977 kb on - strand, within IAI47_03950at 821.977 kb on - strand, within IAI47_03950at 821.977 kb on - strand, within IAI47_03950at 822.015 kb on + strand, within IAI47_03950at 822.015 kb on + strand, within IAI47_03950at 822.016 kb on - strand, within IAI47_03950at 822.016 kb on - strand, within IAI47_03950at 822.136 kb on + strand, within IAI47_03950at 822.137 kb on - strand, within IAI47_03950at 822.147 kb on + strand, within IAI47_03950at 822.148 kb on - strand, within IAI47_03950at 822.148 kb on - strand, within IAI47_03950at 822.155 kb on + strandat 822.155 kb on + strandat 822.155 kb on + strandat 822.156 kb on - strandat 822.156 kb on - strandat 822.184 kb on - strandat 822.231 kb on + strandat 822.251 kb on - strandat 822.271 kb on + strandat 822.271 kb on + strandat 822.271 kb on + strandat 822.272 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep C; time point 1
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820,907 + IAI47_03935 0.86 +0.2
820,907 + IAI47_03935 0.86 +0.5
820,907 + IAI47_03935 0.86 +0.1
820,908 - IAI47_03935 0.86 +0.1
820,908 - IAI47_03935 0.86 -0.8
820,908 - IAI47_03935 0.86 +1.0
820,918 - IAI47_03935 0.88 -0.9
820,918 - IAI47_03935 0.88 -0.8
820,918 - IAI47_03935 0.88 +0.4
820,918 - IAI47_03935 0.88 -0.5
820,918 - IAI47_03935 0.88 +0.5
820,918 - IAI47_03935 0.88 +0.2
820,918 - IAI47_03935 0.88 +0.8
821,116 + IAI47_03940 0.27 -0.4
821,117 - IAI47_03940 0.28 -1.1
821,117 - IAI47_03940 0.28 +0.3
821,117 - IAI47_03940 0.28 -0.8
821,164 - IAI47_03940 0.37 -2.6
821,164 - IAI47_03940 0.37 +1.1
821,280 + IAI47_03940 0.59 -1.2
821,280 + IAI47_03940 0.59 -0.3
821,281 - IAI47_03940 0.59 -0.8
821,281 - IAI47_03940 0.59 +0.5
821,281 - IAI47_03940 0.59 +0.6
821,281 - IAI47_03940 0.59 -0.7
821,283 + IAI47_03940 0.59 -1.8
821,283 + IAI47_03940 0.59 +0.1
821,283 + IAI47_03940 0.59 +0.9
821,283 + IAI47_03940 0.59 -1.2
821,283 + IAI47_03940 0.59 +0.5
821,283 + IAI47_03940 0.59 -1.0
821,283 + IAI47_03940 0.59 -0.4
821,283 + IAI47_03940 0.59 +0.1
821,284 - IAI47_03940 0.59 +0.4
821,284 - IAI47_03940 0.59 +1.0
821,284 - IAI47_03940 0.59 -0.2
821,284 - IAI47_03940 0.59 -0.8
821,378 + IAI47_03940 0.77 -0.1
821,378 + IAI47_03940 0.77 +0.5
821,428 + IAI47_03940 0.87 +0.1
821,428 + IAI47_03940 0.87 +0.5
821,428 + IAI47_03940 0.87 -0.1
821,429 - IAI47_03940 0.87 +0.5
821,429 - IAI47_03940 0.87 -1.8
821,533 - +0.8
821,539 + IAI47_03945 0.11 +0.7
821,539 + IAI47_03945 0.11 +0.6
821,539 + IAI47_03945 0.11 +1.1
821,539 + IAI47_03945 0.11 +0.0
821,539 + IAI47_03945 0.11 +1.0
821,539 + IAI47_03945 0.11 -0.3
821,539 + IAI47_03945 0.11 -0.1
821,540 - IAI47_03945 0.11 +1.3
821,540 - IAI47_03945 0.11 -0.8
821,540 - IAI47_03945 0.11 +0.7
821,557 + IAI47_03945 0.15 +0.4
821,558 - IAI47_03945 0.16 +0.6
821,739 + IAI47_03945 0.60 +0.8
821,739 + IAI47_03945 0.60 +0.3
821,740 - IAI47_03945 0.60 -0.5
821,740 - IAI47_03945 0.60 +0.6
821,740 - IAI47_03945 0.60 +0.0
821,770 + IAI47_03945 0.68 +1.2
821,771 - IAI47_03945 0.68 +0.1
821,864 + -1.2
821,864 + -1.6
821,865 - -0.6
821,897 + -0.4
821,897 + -0.7
821,944 + IAI47_03950 0.28 -2.0
821,944 + IAI47_03950 0.28 -0.8
821,953 + IAI47_03950 0.31 -0.3
821,953 + IAI47_03950 0.31 -2.3
821,954 - IAI47_03950 0.31 -1.8
821,954 - IAI47_03950 0.31 -1.0
821,954 - IAI47_03950 0.31 +0.8
821,954 - IAI47_03950 0.31 -1.5
821,976 + IAI47_03950 0.38 +0.5
821,976 + IAI47_03950 0.38 +1.2
821,977 - IAI47_03950 0.38 -0.6
821,977 - IAI47_03950 0.38 +1.4
821,977 - IAI47_03950 0.38 -0.1
822,015 + IAI47_03950 0.49 +0.8
822,015 + IAI47_03950 0.49 +0.4
822,016 - IAI47_03950 0.49 +1.4
822,016 - IAI47_03950 0.49 -0.4
822,136 + IAI47_03950 0.85 +1.4
822,137 - IAI47_03950 0.85 -0.0
822,147 + IAI47_03950 0.88 +0.1
822,148 - IAI47_03950 0.89 -0.6
822,148 - IAI47_03950 0.89 +1.8
822,155 + +1.0
822,155 + +1.0
822,155 + +0.0
822,156 - +0.2
822,156 - -0.9
822,184 - +0.3
822,231 + -0.4
822,251 - +0.8
822,271 + -0.9
822,271 + +0.0
822,271 + +0.8
822,272 - +1.6

Or see this region's nucleotide sequence