Strain Fitness in Pantoea sp. MT58 around IAI47_01875

Experiment: Ying_AminoAcid20 rep C; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_01865 and IAI47_01870 overlap by 1 nucleotidesIAI47_01870 and IAI47_01875 overlap by 8 nucleotidesIAI47_01875 and IAI47_01880 overlap by 11 nucleotidesIAI47_01880 and IAI47_01885 overlap by 62 nucleotides IAI47_01865: IAI47_01865 - pilus assembly protein PilM, at 410,964 to 411,770 _01865 IAI47_01870: IAI47_01870 - PilN domain-containing protein, at 411,770 to 412,312 _01870 IAI47_01875: IAI47_01875 - hypothetical protein, at 412,305 to 412,802 _01875 IAI47_01880: IAI47_01880 - DUF2531 family protein, at 412,792 to 413,175 _01880 IAI47_01885: IAI47_01885 - DNA uptake porin HofQ, at 413,114 to 414,385 _01885 Position (kb) 412 413Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 411.306 kb on - strand, within IAI47_01865at 411.325 kb on - strand, within IAI47_01865at 411.380 kb on + strand, within IAI47_01865at 411.381 kb on - strand, within IAI47_01865at 411.406 kb on + strand, within IAI47_01865at 411.406 kb on + strand, within IAI47_01865at 411.407 kb on - strand, within IAI47_01865at 411.407 kb on - strand, within IAI47_01865at 411.418 kb on + strand, within IAI47_01865at 411.418 kb on + strand, within IAI47_01865at 411.418 kb on + strand, within IAI47_01865at 411.463 kb on + strand, within IAI47_01865at 411.516 kb on - strand, within IAI47_01865at 411.643 kb on + strand, within IAI47_01865at 411.643 kb on + strand, within IAI47_01865at 411.643 kb on + strand, within IAI47_01865at 411.643 kb on + strand, within IAI47_01865at 411.644 kb on - strand, within IAI47_01865at 411.644 kb on - strand, within IAI47_01865at 411.687 kb on + strand, within IAI47_01865at 411.687 kb on + strand, within IAI47_01865at 411.687 kb on + strand, within IAI47_01865at 411.687 kb on + strand, within IAI47_01865at 411.687 kb on + strand, within IAI47_01865at 411.688 kb on - strand, within IAI47_01865at 411.688 kb on - strand, within IAI47_01865at 411.688 kb on - strand, within IAI47_01865at 411.690 kb on + strandat 411.690 kb on + strandat 411.690 kb on + strandat 411.690 kb on + strandat 411.690 kb on + strandat 411.690 kb on + strandat 411.691 kb on - strandat 411.691 kb on - strandat 411.691 kb on - strandat 411.691 kb on - strandat 411.691 kb on - strandat 411.691 kb on - strandat 411.692 kb on + strandat 411.692 kb on + strandat 411.692 kb on + strandat 411.692 kb on + strandat 411.692 kb on + strandat 411.692 kb on + strandat 411.692 kb on + strandat 411.692 kb on + strandat 411.692 kb on + strandat 411.693 kb on - strandat 411.693 kb on - strandat 411.693 kb on - strandat 411.693 kb on - strandat 411.693 kb on - strandat 411.768 kb on + strandat 411.768 kb on + strandat 411.768 kb on + strandat 411.769 kb on - strandat 411.769 kb on - strandat 411.846 kb on + strand, within IAI47_01870at 411.846 kb on + strand, within IAI47_01870at 411.846 kb on + strand, within IAI47_01870at 411.846 kb on + strand, within IAI47_01870at 411.847 kb on - strand, within IAI47_01870at 411.847 kb on - strand, within IAI47_01870at 411.847 kb on - strand, within IAI47_01870at 411.847 kb on - strand, within IAI47_01870at 411.847 kb on - strand, within IAI47_01870at 411.847 kb on - strand, within IAI47_01870at 411.859 kb on + strand, within IAI47_01870at 411.860 kb on - strand, within IAI47_01870at 411.860 kb on - strand, within IAI47_01870at 411.899 kb on + strand, within IAI47_01870at 411.899 kb on + strand, within IAI47_01870at 411.899 kb on + strand, within IAI47_01870at 411.900 kb on - strand, within IAI47_01870at 411.900 kb on - strand, within IAI47_01870at 411.900 kb on - strand, within IAI47_01870at 411.937 kb on - strand, within IAI47_01870at 411.991 kb on - strand, within IAI47_01870at 412.168 kb on + strand, within IAI47_01870at 412.168 kb on + strand, within IAI47_01870at 412.168 kb on + strand, within IAI47_01870at 412.169 kb on - strand, within IAI47_01870at 412.169 kb on - strand, within IAI47_01870at 412.200 kb on + strand, within IAI47_01870at 412.200 kb on + strand, within IAI47_01870at 412.200 kb on + strand, within IAI47_01870at 412.200 kb on + strand, within IAI47_01870at 412.200 kb on + strand, within IAI47_01870at 412.200 kb on + strand, within IAI47_01870at 412.201 kb on - strand, within IAI47_01870at 412.201 kb on - strand, within IAI47_01870at 412.201 kb on - strand, within IAI47_01870at 412.201 kb on - strand, within IAI47_01870at 412.201 kb on - strand, within IAI47_01870at 412.201 kb on - strand, within IAI47_01870at 412.204 kb on + strand, within IAI47_01870at 412.204 kb on + strand, within IAI47_01870at 412.204 kb on + strand, within IAI47_01870at 412.204 kb on + strand, within IAI47_01870at 412.204 kb on + strand, within IAI47_01870at 412.204 kb on + strand, within IAI47_01870at 412.205 kb on - strand, within IAI47_01870at 412.205 kb on - strand, within IAI47_01870at 412.205 kb on - strand, within IAI47_01870at 412.205 kb on - strand, within IAI47_01870at 412.205 kb on - strand, within IAI47_01870at 412.205 kb on - strand, within IAI47_01870at 412.228 kb on + strand, within IAI47_01870at 412.229 kb on - strand, within IAI47_01870at 412.243 kb on - strand, within IAI47_01870at 412.243 kb on - strand, within IAI47_01870at 412.243 kb on - strand, within IAI47_01870at 412.266 kb on - strandat 412.470 kb on - strand, within IAI47_01875at 412.545 kb on - strand, within IAI47_01875at 412.561 kb on + strand, within IAI47_01875at 412.561 kb on + strand, within IAI47_01875at 412.562 kb on - strand, within IAI47_01875at 412.562 kb on - strand, within IAI47_01875at 412.610 kb on + strand, within IAI47_01875at 412.814 kb on + strandat 412.815 kb on - strandat 412.815 kb on - strandat 412.815 kb on - strandat 412.827 kb on + strandat 412.969 kb on - strand, within IAI47_01880at 412.969 kb on - strand, within IAI47_01880at 413.009 kb on + strand, within IAI47_01880at 413.010 kb on - strand, within IAI47_01880at 413.054 kb on + strand, within IAI47_01880at 413.088 kb on + strand, within IAI47_01880at 413.088 kb on + strand, within IAI47_01880at 413.088 kb on + strand, within IAI47_01880at 413.088 kb on + strand, within IAI47_01880at 413.088 kb on + strand, within IAI47_01880at 413.088 kb on + strand, within IAI47_01880at 413.088 kb on + strand, within IAI47_01880at 413.088 kb on + strand, within IAI47_01880at 413.088 kb on + strand, within IAI47_01880at 413.088 kb on + strand, within IAI47_01880at 413.089 kb on - strand, within IAI47_01880at 413.089 kb on - strand, within IAI47_01880at 413.089 kb on - strand, within IAI47_01880at 413.089 kb on - strand, within IAI47_01880at 413.089 kb on - strand, within IAI47_01880at 413.089 kb on - strand, within IAI47_01880at 413.089 kb on - strand, within IAI47_01880at 413.089 kb on - strand, within IAI47_01880at 413.089 kb on - strand, within IAI47_01880at 413.089 kb on - strand, within IAI47_01880at 413.089 kb on - strand, within IAI47_01880at 413.089 kb on - strand, within IAI47_01880at 413.095 kb on + strand, within IAI47_01880at 413.095 kb on + strand, within IAI47_01880at 413.095 kb on + strand, within IAI47_01880at 413.096 kb on - strand, within IAI47_01880at 413.096 kb on - strand, within IAI47_01880at 413.096 kb on - strand, within IAI47_01880at 413.096 kb on - strand, within IAI47_01880at 413.099 kb on + strand, within IAI47_01880at 413.099 kb on + strand, within IAI47_01880at 413.099 kb on + strand, within IAI47_01880at 413.099 kb on + strand, within IAI47_01880at 413.099 kb on + strand, within IAI47_01880at 413.100 kb on - strand, within IAI47_01880at 413.100 kb on - strand, within IAI47_01880at 413.100 kb on - strand, within IAI47_01880at 413.113 kb on + strand, within IAI47_01880at 413.114 kb on - strandat 413.114 kb on - strandat 413.114 kb on - strandat 413.114 kb on - strandat 413.114 kb on - strandat 413.165 kb on + strandat 413.165 kb on + strandat 413.203 kb on + strandat 413.204 kb on - strandat 413.204 kb on - strandat 413.204 kb on - strandat 413.214 kb on + strandat 413.221 kb on + strandat 413.221 kb on + strandat 413.221 kb on + strandat 413.221 kb on + strandat 413.222 kb on - strandat 413.222 kb on - strandat 413.243 kb on + strand, within IAI47_01885at 413.243 kb on + strand, within IAI47_01885at 413.244 kb on - strand, within IAI47_01885at 413.244 kb on - strand, within IAI47_01885at 413.374 kb on + strand, within IAI47_01885at 413.374 kb on + strand, within IAI47_01885at 413.375 kb on - strand, within IAI47_01885at 413.375 kb on - strand, within IAI47_01885at 413.460 kb on + strand, within IAI47_01885at 413.461 kb on - strand, within IAI47_01885at 413.461 kb on - strand, within IAI47_01885at 413.461 kb on - strand, within IAI47_01885at 413.461 kb on - strand, within IAI47_01885at 413.492 kb on + strand, within IAI47_01885at 413.492 kb on + strand, within IAI47_01885at 413.492 kb on + strand, within IAI47_01885at 413.575 kb on + strand, within IAI47_01885at 413.576 kb on - strand, within IAI47_01885at 413.576 kb on - strand, within IAI47_01885at 413.596 kb on - strand, within IAI47_01885at 413.640 kb on + strand, within IAI47_01885at 413.686 kb on + strand, within IAI47_01885at 413.686 kb on + strand, within IAI47_01885at 413.686 kb on + strand, within IAI47_01885at 413.687 kb on - strand, within IAI47_01885at 413.692 kb on + strand, within IAI47_01885at 413.692 kb on + strand, within IAI47_01885at 413.692 kb on + strand, within IAI47_01885

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep C; time point 1
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411,306 - IAI47_01865 0.42 -0.4
411,325 - IAI47_01865 0.45 -1.3
411,380 + IAI47_01865 0.52 -0.8
411,381 - IAI47_01865 0.52 -0.8
411,406 + IAI47_01865 0.55 -0.0
411,406 + IAI47_01865 0.55 -1.5
411,407 - IAI47_01865 0.55 -0.6
411,407 - IAI47_01865 0.55 +0.8
411,418 + IAI47_01865 0.56 -0.3
411,418 + IAI47_01865 0.56 +0.6
411,418 + IAI47_01865 0.56 -0.6
411,463 + IAI47_01865 0.62 -0.2
411,516 - IAI47_01865 0.68 +0.1
411,643 + IAI47_01865 0.84 +0.4
411,643 + IAI47_01865 0.84 +0.4
411,643 + IAI47_01865 0.84 -0.2
411,643 + IAI47_01865 0.84 +1.0
411,644 - IAI47_01865 0.84 +1.1
411,644 - IAI47_01865 0.84 +0.8
411,687 + IAI47_01865 0.90 +1.5
411,687 + IAI47_01865 0.90 +0.7
411,687 + IAI47_01865 0.90 +0.8
411,687 + IAI47_01865 0.90 +0.8
411,687 + IAI47_01865 0.90 +0.6
411,688 - IAI47_01865 0.90 +1.4
411,688 - IAI47_01865 0.90 +0.4
411,688 - IAI47_01865 0.90 +0.0
411,690 + +1.1
411,690 + -0.8
411,690 + +0.4
411,690 + -0.1
411,690 + +2.6
411,690 + +1.2
411,691 - -0.4
411,691 - +1.0
411,691 - -0.8
411,691 - +0.8
411,691 - +0.5
411,691 - +0.0
411,692 + +1.2
411,692 + +1.1
411,692 + -0.1
411,692 + +0.4
411,692 + +1.3
411,692 + +0.3
411,692 + -1.5
411,692 + +0.0
411,692 + -0.4
411,693 - -0.5
411,693 - -0.3
411,693 - -0.3
411,693 - +1.8
411,693 - +1.6
411,768 + -0.6
411,768 + -0.8
411,768 + -2.0
411,769 - +1.6
411,769 - -1.1
411,846 + IAI47_01870 0.14 -1.3
411,846 + IAI47_01870 0.14 -2.8
411,846 + IAI47_01870 0.14 +0.2
411,846 + IAI47_01870 0.14 -0.7
411,847 - IAI47_01870 0.14 +0.1
411,847 - IAI47_01870 0.14 -0.1
411,847 - IAI47_01870 0.14 +1.1
411,847 - IAI47_01870 0.14 +0.5
411,847 - IAI47_01870 0.14 +0.8
411,847 - IAI47_01870 0.14 +0.3
411,859 + IAI47_01870 0.16 -0.7
411,860 - IAI47_01870 0.17 -0.0
411,860 - IAI47_01870 0.17 -0.2
411,899 + IAI47_01870 0.24 -0.4
411,899 + IAI47_01870 0.24 +0.2
411,899 + IAI47_01870 0.24 +0.2
411,900 - IAI47_01870 0.24 +0.4
411,900 - IAI47_01870 0.24 -0.4
411,900 - IAI47_01870 0.24 -0.3
411,937 - IAI47_01870 0.31 -0.1
411,991 - IAI47_01870 0.41 +0.1
412,168 + IAI47_01870 0.73 -0.2
412,168 + IAI47_01870 0.73 +1.2
412,168 + IAI47_01870 0.73 -0.3
412,169 - IAI47_01870 0.73 -1.6
412,169 - IAI47_01870 0.73 -1.4
412,200 + IAI47_01870 0.79 -0.0
412,200 + IAI47_01870 0.79 +0.1
412,200 + IAI47_01870 0.79 -0.0
412,200 + IAI47_01870 0.79 +0.2
412,200 + IAI47_01870 0.79 -0.4
412,200 + IAI47_01870 0.79 +0.3
412,201 - IAI47_01870 0.79 +0.7
412,201 - IAI47_01870 0.79 -0.1
412,201 - IAI47_01870 0.79 +0.5
412,201 - IAI47_01870 0.79 -0.5
412,201 - IAI47_01870 0.79 +0.2
412,201 - IAI47_01870 0.79 +0.5
412,204 + IAI47_01870 0.80 -0.0
412,204 + IAI47_01870 0.80 +1.0
412,204 + IAI47_01870 0.80 -1.2
412,204 + IAI47_01870 0.80 +0.8
412,204 + IAI47_01870 0.80 -1.9
412,204 + IAI47_01870 0.80 +0.7
412,205 - IAI47_01870 0.80 +1.6
412,205 - IAI47_01870 0.80 -0.0
412,205 - IAI47_01870 0.80 -0.4
412,205 - IAI47_01870 0.80 +0.8
412,205 - IAI47_01870 0.80 -0.0
412,205 - IAI47_01870 0.80 -0.3
412,228 + IAI47_01870 0.84 -2.8
412,229 - IAI47_01870 0.85 +0.6
412,243 - IAI47_01870 0.87 +0.7
412,243 - IAI47_01870 0.87 -0.2
412,243 - IAI47_01870 0.87 -0.2
412,266 - +0.3
412,470 - IAI47_01875 0.33 +0.2
412,545 - IAI47_01875 0.48 +0.3
412,561 + IAI47_01875 0.51 -0.5
412,561 + IAI47_01875 0.51 -1.0
412,562 - IAI47_01875 0.52 +0.2
412,562 - IAI47_01875 0.52 +1.4
412,610 + IAI47_01875 0.61 -0.5
412,814 + +0.4
412,815 - -1.0
412,815 - -0.2
412,815 - -0.5
412,827 + -1.5
412,969 - IAI47_01880 0.46 +1.1
412,969 - IAI47_01880 0.46 -0.2
413,009 + IAI47_01880 0.57 +0.5
413,010 - IAI47_01880 0.57 +0.6
413,054 + IAI47_01880 0.68 +0.8
413,088 + IAI47_01880 0.77 -1.5
413,088 + IAI47_01880 0.77 -0.8
413,088 + IAI47_01880 0.77 -0.0
413,088 + IAI47_01880 0.77 -0.9
413,088 + IAI47_01880 0.77 -3.2
413,088 + IAI47_01880 0.77 -1.5
413,088 + IAI47_01880 0.77 -0.4
413,088 + IAI47_01880 0.77 -0.3
413,088 + IAI47_01880 0.77 +0.8
413,088 + IAI47_01880 0.77 +0.6
413,089 - IAI47_01880 0.77 -0.3
413,089 - IAI47_01880 0.77 -0.1
413,089 - IAI47_01880 0.77 +0.5
413,089 - IAI47_01880 0.77 -0.1
413,089 - IAI47_01880 0.77 +2.3
413,089 - IAI47_01880 0.77 +1.5
413,089 - IAI47_01880 0.77 +0.2
413,089 - IAI47_01880 0.77 +0.2
413,089 - IAI47_01880 0.77 -0.0
413,089 - IAI47_01880 0.77 +1.6
413,089 - IAI47_01880 0.77 -0.4
413,089 - IAI47_01880 0.77 +0.2
413,095 + IAI47_01880 0.79 -1.2
413,095 + IAI47_01880 0.79 +0.4
413,095 + IAI47_01880 0.79 -0.6
413,096 - IAI47_01880 0.79 -0.6
413,096 - IAI47_01880 0.79 -0.3
413,096 - IAI47_01880 0.79 -2.5
413,096 - IAI47_01880 0.79 -0.8
413,099 + IAI47_01880 0.80 +2.3
413,099 + IAI47_01880 0.80 -0.0
413,099 + IAI47_01880 0.80 +0.1
413,099 + IAI47_01880 0.80 -0.1
413,099 + IAI47_01880 0.80 -0.4
413,100 - IAI47_01880 0.80 +0.6
413,100 - IAI47_01880 0.80 -0.3
413,100 - IAI47_01880 0.80 -0.1
413,113 + IAI47_01880 0.84 -0.3
413,114 - +0.4
413,114 - -0.6
413,114 - +0.2
413,114 - +0.8
413,114 - +0.8
413,165 + +1.5
413,165 + +0.6
413,203 + -2.0
413,204 - -0.8
413,204 - -0.9
413,204 - +0.4
413,214 + +1.5
413,221 + +0.7
413,221 + +0.5
413,221 + +0.4
413,221 + -0.0
413,222 - +0.1
413,222 - -0.8
413,243 + IAI47_01885 0.10 -1.2
413,243 + IAI47_01885 0.10 -0.8
413,244 - IAI47_01885 0.10 +1.0
413,244 - IAI47_01885 0.10 +1.4
413,374 + IAI47_01885 0.20 +0.4
413,374 + IAI47_01885 0.20 +0.8
413,375 - IAI47_01885 0.21 +0.2
413,375 - IAI47_01885 0.21 -1.4
413,460 + IAI47_01885 0.27 -0.9
413,461 - IAI47_01885 0.27 +0.0
413,461 - IAI47_01885 0.27 +0.5
413,461 - IAI47_01885 0.27 -0.3
413,461 - IAI47_01885 0.27 +0.8
413,492 + IAI47_01885 0.30 +0.8
413,492 + IAI47_01885 0.30 -0.2
413,492 + IAI47_01885 0.30 +0.2
413,575 + IAI47_01885 0.36 +0.4
413,576 - IAI47_01885 0.36 +0.2
413,576 - IAI47_01885 0.36 -0.3
413,596 - IAI47_01885 0.38 -0.2
413,640 + IAI47_01885 0.41 -1.2
413,686 + IAI47_01885 0.45 -1.8
413,686 + IAI47_01885 0.45 +0.8
413,686 + IAI47_01885 0.45 +0.1
413,687 - IAI47_01885 0.45 -0.2
413,692 + IAI47_01885 0.45 -2.0
413,692 + IAI47_01885 0.45 +0.3
413,692 + IAI47_01885 0.45 +0.7

Or see this region's nucleotide sequence