Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03904

Experiment: D-Mannose (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03902 and MPMX20_03903 are separated by 9 nucleotidesMPMX20_03903 and MPMX20_03904 overlap by 1 nucleotidesMPMX20_03904 and MPMX20_03905 are separated by 9 nucleotidesMPMX20_03905 and MPMX20_03906 are separated by 40 nucleotides MPMX20_03902: MPMX20_03902 - Urease accessory protein UreE, at 4,112,315 to 4,112,779 _03902 MPMX20_03903: MPMX20_03903 - hypothetical protein, at 4,112,789 to 4,113,328 _03903 MPMX20_03904: MPMX20_03904 - Urease accessory protein UreF, at 4,113,328 to 4,114,002 _03904 MPMX20_03905: MPMX20_03905 - Urease accessory protein UreG, at 4,114,012 to 4,114,629 _03905 MPMX20_03906: MPMX20_03906 - tRNA N6-adenosine threonylcarbamoyltransferase, at 4,114,670 to 4,115,683 _03906 Position (kb) 4113 4114 4115Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4112.334 kb on + strandat 4112.342 kb on - strandat 4112.356 kb on - strandat 4112.637 kb on + strand, within MPMX20_03902at 4112.702 kb on - strand, within MPMX20_03902at 4112.734 kb on - strandat 4112.748 kb on + strandat 4112.766 kb on - strandat 4112.855 kb on + strand, within MPMX20_03903at 4112.947 kb on + strand, within MPMX20_03903at 4112.993 kb on - strand, within MPMX20_03903at 4113.106 kb on + strand, within MPMX20_03903at 4113.153 kb on + strand, within MPMX20_03903at 4113.153 kb on + strand, within MPMX20_03903at 4113.153 kb on + strand, within MPMX20_03903at 4113.153 kb on + strand, within MPMX20_03903at 4113.153 kb on + strand, within MPMX20_03903at 4113.153 kb on + strand, within MPMX20_03903at 4113.153 kb on + strand, within MPMX20_03903at 4113.153 kb on + strand, within MPMX20_03903at 4113.153 kb on + strand, within MPMX20_03903at 4113.153 kb on + strand, within MPMX20_03903at 4113.155 kb on + strand, within MPMX20_03903at 4113.161 kb on - strand, within MPMX20_03903at 4113.161 kb on - strand, within MPMX20_03903at 4113.161 kb on - strand, within MPMX20_03903at 4113.161 kb on - strand, within MPMX20_03903at 4113.161 kb on - strand, within MPMX20_03903at 4113.175 kb on - strand, within MPMX20_03903at 4113.213 kb on + strand, within MPMX20_03903at 4113.221 kb on - strand, within MPMX20_03903at 4113.221 kb on - strand, within MPMX20_03903at 4113.288 kb on - strandat 4113.366 kb on + strandat 4113.409 kb on + strand, within MPMX20_03904at 4113.417 kb on - strand, within MPMX20_03904at 4113.446 kb on + strand, within MPMX20_03904at 4113.446 kb on + strand, within MPMX20_03904at 4113.484 kb on + strand, within MPMX20_03904at 4113.490 kb on + strand, within MPMX20_03904at 4113.490 kb on + strand, within MPMX20_03904at 4113.570 kb on + strand, within MPMX20_03904at 4113.583 kb on + strand, within MPMX20_03904at 4113.583 kb on + strand, within MPMX20_03904at 4113.593 kb on + strand, within MPMX20_03904at 4113.614 kb on + strand, within MPMX20_03904at 4113.648 kb on - strand, within MPMX20_03904at 4113.654 kb on + strand, within MPMX20_03904at 4113.675 kb on + strand, within MPMX20_03904at 4113.685 kb on - strand, within MPMX20_03904at 4113.722 kb on - strand, within MPMX20_03904at 4113.726 kb on + strand, within MPMX20_03904at 4113.732 kb on + strand, within MPMX20_03904at 4113.764 kb on + strand, within MPMX20_03904at 4113.769 kb on + strand, within MPMX20_03904at 4113.776 kb on + strand, within MPMX20_03904at 4113.850 kb on - strand, within MPMX20_03904at 4113.890 kb on + strand, within MPMX20_03904at 4113.927 kb on + strand, within MPMX20_03904at 4113.935 kb on - strandat 4113.957 kb on - strandat 4113.957 kb on - strandat 4113.957 kb on - strandat 4113.962 kb on - strandat 4114.006 kb on - strandat 4114.042 kb on + strandat 4114.092 kb on + strand, within MPMX20_03905at 4114.092 kb on + strand, within MPMX20_03905at 4114.092 kb on + strand, within MPMX20_03905at 4114.100 kb on - strand, within MPMX20_03905at 4114.100 kb on - strand, within MPMX20_03905at 4114.107 kb on - strand, within MPMX20_03905at 4114.112 kb on + strand, within MPMX20_03905at 4114.141 kb on + strand, within MPMX20_03905at 4114.159 kb on - strand, within MPMX20_03905at 4114.339 kb on - strand, within MPMX20_03905at 4114.355 kb on + strand, within MPMX20_03905at 4114.363 kb on - strand, within MPMX20_03905at 4114.427 kb on + strand, within MPMX20_03905at 4114.489 kb on - strand, within MPMX20_03905at 4114.494 kb on - strand, within MPMX20_03905at 4114.663 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannose (N)
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4,112,334 + -2.1
4,112,342 - -0.2
4,112,356 - +0.7
4,112,637 + MPMX20_03902 0.69 -2.0
4,112,702 - MPMX20_03902 0.83 -3.2
4,112,734 - +1.6
4,112,748 + +0.8
4,112,766 - +0.4
4,112,855 + MPMX20_03903 0.12 +0.3
4,112,947 + MPMX20_03903 0.29 +2.6
4,112,993 - MPMX20_03903 0.38 -0.3
4,113,106 + MPMX20_03903 0.59 +0.7
4,113,153 + MPMX20_03903 0.67 +1.7
4,113,153 + MPMX20_03903 0.67 +0.9
4,113,153 + MPMX20_03903 0.67 -2.2
4,113,153 + MPMX20_03903 0.67 -0.3
4,113,153 + MPMX20_03903 0.67 -0.7
4,113,153 + MPMX20_03903 0.67 -2.1
4,113,153 + MPMX20_03903 0.67 -2.3
4,113,153 + MPMX20_03903 0.67 -0.5
4,113,153 + MPMX20_03903 0.67 -0.1
4,113,153 + MPMX20_03903 0.67 -0.8
4,113,155 + MPMX20_03903 0.68 -0.5
4,113,161 - MPMX20_03903 0.69 -2.8
4,113,161 - MPMX20_03903 0.69 -0.5
4,113,161 - MPMX20_03903 0.69 -0.7
4,113,161 - MPMX20_03903 0.69 +2.3
4,113,161 - MPMX20_03903 0.69 -1.8
4,113,175 - MPMX20_03903 0.71 +0.9
4,113,213 + MPMX20_03903 0.79 +0.7
4,113,221 - MPMX20_03903 0.80 -1.6
4,113,221 - MPMX20_03903 0.80 -2.9
4,113,288 - +0.3
4,113,366 + +1.5
4,113,409 + MPMX20_03904 0.12 -3.2
4,113,417 - MPMX20_03904 0.13 +1.4
4,113,446 + MPMX20_03904 0.17 -2.5
4,113,446 + MPMX20_03904 0.17 +0.4
4,113,484 + MPMX20_03904 0.23 -0.3
4,113,490 + MPMX20_03904 0.24 -2.1
4,113,490 + MPMX20_03904 0.24 +0.2
4,113,570 + MPMX20_03904 0.36 +1.4
4,113,583 + MPMX20_03904 0.38 -0.2
4,113,583 + MPMX20_03904 0.38 -0.3
4,113,593 + MPMX20_03904 0.39 +0.3
4,113,614 + MPMX20_03904 0.42 +0.5
4,113,648 - MPMX20_03904 0.47 +0.5
4,113,654 + MPMX20_03904 0.48 +0.3
4,113,675 + MPMX20_03904 0.51 +0.5
4,113,685 - MPMX20_03904 0.53 +1.1
4,113,722 - MPMX20_03904 0.58 -0.9
4,113,726 + MPMX20_03904 0.59 +1.2
4,113,732 + MPMX20_03904 0.60 +0.8
4,113,764 + MPMX20_03904 0.65 -1.9
4,113,769 + MPMX20_03904 0.65 +0.2
4,113,776 + MPMX20_03904 0.66 +1.7
4,113,850 - MPMX20_03904 0.77 +1.4
4,113,890 + MPMX20_03904 0.83 +0.1
4,113,927 + MPMX20_03904 0.89 -2.1
4,113,935 - -0.4
4,113,957 - +0.5
4,113,957 - -1.9
4,113,957 - +1.3
4,113,962 - -0.2
4,114,006 - -1.6
4,114,042 + +0.7
4,114,092 + MPMX20_03905 0.13 +1.1
4,114,092 + MPMX20_03905 0.13 -0.5
4,114,092 + MPMX20_03905 0.13 +0.7
4,114,100 - MPMX20_03905 0.14 +1.5
4,114,100 - MPMX20_03905 0.14 +0.8
4,114,107 - MPMX20_03905 0.15 +1.6
4,114,112 + MPMX20_03905 0.16 +1.1
4,114,141 + MPMX20_03905 0.21 -0.1
4,114,159 - MPMX20_03905 0.24 +0.9
4,114,339 - MPMX20_03905 0.53 +0.9
4,114,355 + MPMX20_03905 0.56 -0.4
4,114,363 - MPMX20_03905 0.57 +3.7
4,114,427 + MPMX20_03905 0.67 -0.9
4,114,489 - MPMX20_03905 0.77 +1.3
4,114,494 - MPMX20_03905 0.78 +0.6
4,114,663 - +2.4

Or see this region's nucleotide sequence