Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01789

Experiment: D-Mannose (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_01788 and MPMX20_01789 are separated by 34 nucleotidesMPMX20_01789 and MPMX20_01790 are separated by 238 nucleotides MPMX20_01788: MPMX20_01788 - Beta-hexosaminidase, at 1,879,183 to 1,880,208 _01788 MPMX20_01789: MPMX20_01789 - hypothetical protein, at 1,880,243 to 1,880,785 _01789 MPMX20_01790: MPMX20_01790 - NADH dehydrogenase, at 1,881,024 to 1,882,328 _01790 Position (kb) 1880 1881Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1879.320 kb on - strand, within MPMX20_01788at 1879.326 kb on + strand, within MPMX20_01788at 1879.391 kb on - strand, within MPMX20_01788at 1879.402 kb on + strand, within MPMX20_01788at 1879.410 kb on - strand, within MPMX20_01788at 1879.548 kb on - strand, within MPMX20_01788at 1879.552 kb on + strand, within MPMX20_01788at 1879.560 kb on - strand, within MPMX20_01788at 1879.565 kb on - strand, within MPMX20_01788at 1879.579 kb on + strand, within MPMX20_01788at 1879.749 kb on - strand, within MPMX20_01788at 1880.084 kb on - strand, within MPMX20_01788at 1880.160 kb on + strandat 1880.168 kb on - strandat 1880.199 kb on - strandat 1880.203 kb on + strandat 1880.211 kb on - strandat 1880.275 kb on - strandat 1880.285 kb on - strandat 1880.380 kb on + strand, within MPMX20_01789at 1880.431 kb on + strand, within MPMX20_01789at 1880.439 kb on - strand, within MPMX20_01789at 1880.444 kb on + strand, within MPMX20_01789at 1880.444 kb on + strand, within MPMX20_01789at 1880.444 kb on + strand, within MPMX20_01789at 1880.444 kb on + strand, within MPMX20_01789at 1880.455 kb on + strand, within MPMX20_01789at 1880.458 kb on - strand, within MPMX20_01789at 1880.460 kb on + strand, within MPMX20_01789at 1880.463 kb on - strand, within MPMX20_01789at 1880.508 kb on + strand, within MPMX20_01789at 1880.533 kb on - strand, within MPMX20_01789at 1880.553 kb on + strand, within MPMX20_01789at 1880.645 kb on + strand, within MPMX20_01789at 1880.659 kb on - strand, within MPMX20_01789at 1880.784 kb on + strandat 1880.792 kb on + strandat 1881.082 kb on + strandat 1881.090 kb on - strandat 1881.397 kb on - strand, within MPMX20_01790at 1881.405 kb on + strand, within MPMX20_01790at 1881.434 kb on - strand, within MPMX20_01790at 1881.512 kb on + strand, within MPMX20_01790at 1881.590 kb on + strand, within MPMX20_01790at 1881.598 kb on - strand, within MPMX20_01790at 1881.598 kb on - strand, within MPMX20_01790at 1881.608 kb on - strand, within MPMX20_01790

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannose (N)
remove
1,879,320 - MPMX20_01788 0.13 -1.8
1,879,326 + MPMX20_01788 0.14 +2.2
1,879,391 - MPMX20_01788 0.20 +1.9
1,879,402 + MPMX20_01788 0.21 -0.0
1,879,410 - MPMX20_01788 0.22 -0.2
1,879,548 - MPMX20_01788 0.36 +1.7
1,879,552 + MPMX20_01788 0.36 +0.7
1,879,560 - MPMX20_01788 0.37 +1.2
1,879,565 - MPMX20_01788 0.37 -0.4
1,879,579 + MPMX20_01788 0.39 +1.0
1,879,749 - MPMX20_01788 0.55 -0.1
1,880,084 - MPMX20_01788 0.88 -0.3
1,880,160 + +0.8
1,880,168 - -0.7
1,880,199 - -1.9
1,880,203 + +0.9
1,880,211 - -1.8
1,880,275 - -0.0
1,880,285 - +0.3
1,880,380 + MPMX20_01789 0.25 -1.6
1,880,431 + MPMX20_01789 0.35 -1.7
1,880,439 - MPMX20_01789 0.36 +2.3
1,880,444 + MPMX20_01789 0.37 -2.4
1,880,444 + MPMX20_01789 0.37 -1.6
1,880,444 + MPMX20_01789 0.37 +0.4
1,880,444 + MPMX20_01789 0.37 +0.5
1,880,455 + MPMX20_01789 0.39 -0.4
1,880,458 - MPMX20_01789 0.40 +1.1
1,880,460 + MPMX20_01789 0.40 +0.9
1,880,463 - MPMX20_01789 0.41 -2.7
1,880,508 + MPMX20_01789 0.49 +0.7
1,880,533 - MPMX20_01789 0.53 -1.3
1,880,553 + MPMX20_01789 0.57 -1.2
1,880,645 + MPMX20_01789 0.74 -0.2
1,880,659 - MPMX20_01789 0.77 -1.7
1,880,784 + -1.7
1,880,792 + -2.9
1,881,082 + -0.6
1,881,090 - -2.0
1,881,397 - MPMX20_01790 0.29 +2.1
1,881,405 + MPMX20_01790 0.29 -1.3
1,881,434 - MPMX20_01790 0.31 -1.8
1,881,512 + MPMX20_01790 0.37 -0.4
1,881,590 + MPMX20_01790 0.43 +0.2
1,881,598 - MPMX20_01790 0.44 +0.3
1,881,598 - MPMX20_01790 0.44 +4.6
1,881,608 - MPMX20_01790 0.45 +1.9

Or see this region's nucleotide sequence