Strain Fitness in Pantoea sp. MT58 around IAI47_17190

Experiment: Ying_AminoAcid20 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 1
3,638,515	+		IAI47_17185	0.34	-0.5
3,638,640	-		IAI47_17185	0.43	-0.1
3,638,757	+		IAI47_17185	0.51	+1.4
3,638,757	+		IAI47_17185	0.51	+0.9
3,638,757	+		IAI47_17185	0.51	-0.2
3,638,757	+		IAI47_17185	0.51	-1.9
3,638,758	-		IAI47_17185	0.51	+1.2
3,638,819	-		IAI47_17185	0.55	+0.6
3,638,834	+		IAI47_17185	0.56	-1.0
3,638,834	+		IAI47_17185	0.56	-0.1
3,638,835	-		IAI47_17185	0.57	+0.1
3,638,835	-		IAI47_17185	0.57	-0.5
3,638,835	-		IAI47_17185	0.57	-1.5
3,638,835	-		IAI47_17185	0.57	+1.9
3,638,860	+		IAI47_17185	0.58	+1.1
3,638,930	+		IAI47_17185	0.63	+0.5
3,638,930	+		IAI47_17185	0.63	+1.3
3,638,931	-		IAI47_17185	0.63	-0.9
3,638,986	+		IAI47_17185	0.67	-0.1
3,638,986	+		IAI47_17185	0.67	+2.9
3,639,013	+		IAI47_17185	0.69	+1.3
3,639,013	+		IAI47_17185	0.69	+0.6
3,639,038	-		IAI47_17185	0.71	-0.5
3,639,038	-		IAI47_17185	0.71	-0.5
3,639,106	+		IAI47_17185	0.75	-0.7
3,639,106	+		IAI47_17185	0.75	+1.6
3,639,178	+		IAI47_17185	0.80	+1.2
3,639,188	+		IAI47_17185	0.81	-0.7
3,639,188	+		IAI47_17185	0.81	+0.4
3,639,189	-		IAI47_17185	0.81	-1.3
3,639,219	+		IAI47_17185	0.83	-0.1
3,639,219	+		IAI47_17185	0.83	+1.2
3,639,219	+		IAI47_17185	0.83	+1.2
3,639,220	-		IAI47_17185	0.83	-1.1
3,639,220	-		IAI47_17185	0.83	+0.9
3,639,343	+				-0.1
3,639,343	+				+0.3
3,639,344	-				+0.5
3,639,344	-				-0.1
3,639,360	+				-1.6
3,639,360	+				-1.3
3,639,360	+				-0.9
3,639,391	+				-0.3
3,639,442	+				-0.3
3,639,442	+				-1.4
3,639,442	+				+0.3
3,639,478	+				+0.5
3,639,478	+				+0.3
3,639,478	+				+0.5
3,639,478	+				+0.9
3,639,478	+				-0.0
3,639,478	+				-0.6
3,639,478	+				-0.0
3,639,478	+				-1.1
3,639,478	+				+0.3
3,639,479	-				+0.9
3,639,479	-				-0.5
3,639,479	-				+1.9
3,639,479	-				-0.1
3,639,479	-				-1.5
3,639,479	-				-0.1
3,639,479	-				+0.9
3,639,479	-				+0.2
3,639,577	+		IAI47_17190	0.34	-0.8
3,639,577	+		IAI47_17190	0.34	+0.2
3,639,577	+		IAI47_17190	0.34	-0.7
3,639,577	+		IAI47_17190	0.34	-0.1
3,639,577	+		IAI47_17190	0.34	-0.1
3,639,577	+		IAI47_17190	0.34	+0.8
3,639,577	+		IAI47_17190	0.34	-1.1
3,639,577	+		IAI47_17190	0.34	+0.3
3,639,577	+		IAI47_17190	0.34	-0.6
3,639,577	+		IAI47_17190	0.34	+0.3
3,639,577	+		IAI47_17190	0.34	+0.1
3,639,578	-		IAI47_17190	0.34	+1.4
3,639,590	+		IAI47_17190	0.39	+0.4
3,639,590	+		IAI47_17190	0.39	+0.4
3,639,590	+		IAI47_17190	0.39	-0.6
3,639,590	+		IAI47_17190	0.39	-0.2
3,639,590	+		IAI47_17190	0.39	-0.1
3,639,590	+		IAI47_17190	0.39	+0.0
3,639,590	+		IAI47_17190	0.39	+0.4
3,639,590	+		IAI47_17190	0.39	+0.0
3,639,591	-		IAI47_17190	0.39	-1.5
3,639,591	-		IAI47_17190	0.39	+0.7
3,639,591	-		IAI47_17190	0.39	-0.0
3,639,591	-		IAI47_17190	0.39	-0.4
3,639,591	-		IAI47_17190	0.39	-0.1
3,639,591	-		IAI47_17190	0.39	+2.5
3,639,591	-		IAI47_17190	0.39	-0.1
3,639,591	-		IAI47_17190	0.39	-1.1
3,639,592	+		IAI47_17190	0.39	+0.9
3,639,592	+		IAI47_17190	0.39	-0.5
3,639,592	+		IAI47_17190	0.39	-0.2
3,639,592	+		IAI47_17190	0.39	-0.3
3,639,592	+		IAI47_17190	0.39	+0.1
3,639,593	-		IAI47_17190	0.40	-0.1
3,639,593	-		IAI47_17190	0.40	-0.3
3,639,593	-		IAI47_17190	0.40	-0.2
3,639,668	-		IAI47_17190	0.66	+0.3
3,639,685	+		IAI47_17190	0.72	-0.8
3,639,685	+		IAI47_17190	0.72	+0.6
3,639,685	+		IAI47_17190	0.72	-0.1
3,639,685	+		IAI47_17190	0.72	-0.7
3,639,685	+		IAI47_17190	0.72	-1.5
3,639,685	+		IAI47_17190	0.72	+0.7
3,639,685	+		IAI47_17190	0.72	-0.1
3,639,685	+		IAI47_17190	0.72	+0.1
3,639,685	+		IAI47_17190	0.72	+0.3
3,639,685	+		IAI47_17190	0.72	+0.7
3,639,685	+		IAI47_17190	0.72	-0.7
3,639,685	+		IAI47_17190	0.72	+0.2
3,639,685	+		IAI47_17190	0.72	+0.3
3,639,685	+		IAI47_17190	0.72	+0.2
3,639,685	+		IAI47_17190	0.72	-0.4
3,639,685	+		IAI47_17190	0.72	+0.5
3,639,685	+		IAI47_17190	0.72	-1.4
3,639,689	+		IAI47_17190	0.73	-1.0
3,639,689	+		IAI47_17190	0.73	-0.1
3,639,689	+		IAI47_17190	0.73	-0.1
3,639,689	+		IAI47_17190	0.73	+1.3
3,639,689	+		IAI47_17190	0.73	-0.5
3,639,689	+		IAI47_17190	0.73	+0.5
3,639,689	+		IAI47_17190	0.73	+0.0
3,639,689	+		IAI47_17190	0.73	+0.5
3,639,689	+		IAI47_17190	0.73	+0.8
3,639,689	+		IAI47_17190	0.73	-1.3
3,639,689	+		IAI47_17190	0.73	+0.9
3,639,689	+		IAI47_17190	0.73	+1.2
3,639,689	+		IAI47_17190	0.73	-0.9
3,639,689	+		IAI47_17190	0.73	+1.9
3,639,690	-		IAI47_17190	0.73	-1.0
3,639,690	-		IAI47_17190	0.73	+0.9
3,639,690	-		IAI47_17190	0.73	+0.1
3,639,690	-		IAI47_17190	0.73	-2.1
3,639,764	+				-1.5
3,639,764	+				-0.5
3,639,776	+				-0.2
3,639,868	+				-0.2
3,639,868	+				+0.8
3,639,868	+				-0.3
3,639,869	-				-0.7
3,639,917	+				+1.9
3,639,933	+				-1.5
3,639,934	-				+2.9
3,639,983	+		IAI47_17195	0.13	+0.6
3,640,371	+				-1.5
3,640,372	-				+0.3
3,640,372	-				+1.4
3,640,396	+				+0.5
3,640,396	+				+0.9
3,640,396	+				-1.7
3,640,397	-				+1.1
3,640,397	-				-0.1
3,640,427	+				-0.5
3,640,514	+				+0.0
3,640,515	-				-1.6
3,640,524	+				+2.5
3,640,524	+				-2.7
3,640,524	+				+0.7
3,640,525	-				+0.4
3,640,525	-				+1.3
3,640,525	-				-0.7
3,640,525	-				-2.2
3,640,525	-				+0.1
3,640,525	-				-1.0
3,640,525	-				-0.4
3,640,525	-				+0.1
3,640,525	-				-1.1
3,640,525	-				+0.4
3,640,536	-		IAI47_17200	0.11	+0.9
3,640,552	+		IAI47_17200	0.12	+0.2
3,640,553	-		IAI47_17200	0.13	+1.3
3,640,565	-		IAI47_17200	0.14	+0.3
3,640,565	-		IAI47_17200	0.14	-0.7
3,640,568	+		IAI47_17200	0.14	+0.1
3,640,568	+		IAI47_17200	0.14	+1.3
3,640,568	+		IAI47_17200	0.14	+0.5
3,640,590	-		IAI47_17200	0.17	+0.9
3,640,619	+		IAI47_17200	0.20	-0.4
3,640,619	+		IAI47_17200	0.20	-1.5
3,640,619	+		IAI47_17200	0.20	+2.0
3,640,620	-		IAI47_17200	0.20	+0.9
3,640,620	-		IAI47_17200	0.20	-0.1
3,640,712	+		IAI47_17200	0.31	+0.3
3,640,713	-		IAI47_17200	0.31	-1.6
3,640,713	-		IAI47_17200	0.31	+0.9
3,640,713	-		IAI47_17200	0.31	-0.2
3,640,715	+		IAI47_17200	0.31	+0.9
3,640,716	-		IAI47_17200	0.32	+0.6