Strain Fitness in Pantoea sp. MT58

Strain Fitness in Pantoea sp. MT58 around IAI47_16895

Experiment: Ying_AminoAcid20 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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Per-strain Table

Position	Strand	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 1
				remove
3,579,018	+	IAI47_16890	0.68	-1.1
3,579,018	+	IAI47_16890	0.68	-1.1
3,579,018	+	IAI47_16890	0.68	+0.6
3,579,018	+	IAI47_16890	0.68	-0.3
3,579,019	-	IAI47_16890	0.68	+0.1
3,579,019	-	IAI47_16890	0.68	-0.7
3,579,019	-	IAI47_16890	0.68	-1.2
3,579,019	-	IAI47_16890	0.68	-0.1
3,579,019	-	IAI47_16890	0.68	+0.4
3,579,019	-	IAI47_16890	0.68	-0.6
3,579,019	-	IAI47_16890	0.68	-0.1
3,579,019	-	IAI47_16890	0.68	-0.1
3,579,019	-	IAI47_16890	0.68	-0.5
3,579,019	-	IAI47_16890	0.68	+0.9
3,579,019	-	IAI47_16890	0.68	+0.6
3,579,019	-	IAI47_16890	0.68	+1.2
3,579,157	+	IAI47_16890	0.72	-0.1
3,579,157	+	IAI47_16890	0.72	+0.5
3,579,157	+	IAI47_16890	0.72	+0.9
3,579,158	-	IAI47_16890	0.72	-0.3
3,579,158	-	IAI47_16890	0.72	+0.9
3,579,205	-	IAI47_16890	0.74	-0.5
3,579,205	-	IAI47_16890	0.74	+0.0
3,579,225	+	IAI47_16890	0.75	+0.7
3,579,225	+	IAI47_16890	0.75	-1.2
3,579,225	+	IAI47_16890	0.75	-0.3
3,579,225	+	IAI47_16890	0.75	-0.4
3,579,226	-	IAI47_16890	0.75	+0.1
3,579,226	-	IAI47_16890	0.75	+0.3
3,579,549	+	IAI47_16890	0.85	-0.4
3,579,549	+	IAI47_16890	0.85	-0.1
3,579,549	+	IAI47_16890	0.85	-0.1
3,579,549	+	IAI47_16890	0.85	-0.5
3,579,550	-	IAI47_16890	0.85	+1.3
3,579,550	-	IAI47_16890	0.85	+0.3
3,579,627	+	IAI47_16890	0.88	-0.5
3,579,627	+	IAI47_16890	0.88	-0.1
3,579,627	+	IAI47_16890	0.88	+0.7
3,579,628	-	IAI47_16890	0.88	+0.3
3,579,628	-	IAI47_16890	0.88	+1.3
3,579,628	-	IAI47_16890	0.88	+0.1
3,579,689	+	IAI47_16890	0.90	+1.5
3,579,689	+	IAI47_16890	0.90	+0.1
3,579,689	+	IAI47_16890	0.90	-0.5
3,579,689	+	IAI47_16890	0.90	+1.1
3,579,690	-	IAI47_16890	0.90	+1.7
3,579,690	-	IAI47_16890	0.90	-2.3
3,579,690	-	IAI47_16890	0.90	+1.2
3,579,690	-	IAI47_16890	0.90	-1.8
3,579,781	+			-0.3
3,579,781	+			+0.3
3,579,782	-			+1.6
3,579,782	-			-0.1
3,579,782	-			-0.7
3,579,950	+			+0.7
3,579,991	+			+1.1
3,579,991	+			+0.0
3,579,992	-			+0.5
3,580,088	+			-0.9
3,580,088	+			-1.8
3,580,088	+			-0.1
3,580,088	+			-1.5
3,580,089	-			+0.3
3,580,089	-			+1.9
3,580,302	+			-1.5
3,580,302	+			+0.0
3,580,302	+			-0.5
3,580,302	+			-0.8
3,580,302	+			+1.4
3,580,302	+			-1.9
3,580,302	+			+1.7
3,580,302	+			-0.4
3,580,302	+			-0.1
3,580,303	-			-0.9
3,580,303	-			+0.4
3,580,303	-			+1.5
3,580,303	-			+0.9
3,580,303	-			-0.0
3,580,303	-			+0.0
3,580,303	-			-0.9
3,580,303	-			-0.7
3,580,303	-			+0.9
3,580,303	-			+0.2
3,580,303	-			-0.7
3,580,303	-			-1.7
3,580,479	+	IAI47_16895	0.15	-1.1
3,580,490	+	IAI47_16895	0.15	+0.5
3,580,490	+	IAI47_16895	0.15	-1.1
3,580,504	+	IAI47_16895	0.15	+0.9
3,580,504	+	IAI47_16895	0.15	+0.0
3,580,511	+	IAI47_16895	0.16	-1.0
3,580,511	+	IAI47_16895	0.16	-0.9
3,580,511	+	IAI47_16895	0.16	-0.7
3,580,511	+	IAI47_16895	0.16	-0.4
3,580,511	+	IAI47_16895	0.16	+0.4
3,580,511	+	IAI47_16895	0.16	-0.5
3,580,511	+	IAI47_16895	0.16	-0.1
3,580,511	+	IAI47_16895	0.16	+1.2
3,580,511	+	IAI47_16895	0.16	-1.0
3,580,511	+	IAI47_16895	0.16	+0.6
3,580,511	+	IAI47_16895	0.16	+0.3
3,580,511	+	IAI47_16895	0.16	+2.5
3,580,511	+	IAI47_16895	0.16	+1.5
3,580,511	+	IAI47_16895	0.16	-0.6
3,580,511	+	IAI47_16895	0.16	-0.5
3,580,511	+	IAI47_16895	0.16	-1.1
3,580,511	+	IAI47_16895	0.16	+0.9
3,580,511	+	IAI47_16895	0.16	+0.5
3,580,511	+	IAI47_16895	0.16	-0.1
3,580,511	+	IAI47_16895	0.16	+0.7
3,580,511	+	IAI47_16895	0.16	-1.0
3,580,511	+	IAI47_16895	0.16	-0.0
3,580,511	+	IAI47_16895	0.16	+1.3
3,580,511	+	IAI47_16895	0.16	-1.5
3,580,511	+	IAI47_16895	0.16	+0.5
3,580,511	+	IAI47_16895	0.16	+1.9
3,580,511	+	IAI47_16895	0.16	+0.2
3,580,511	+	IAI47_16895	0.16	+0.4
3,580,511	+	IAI47_16895	0.16	+0.3
3,580,511	+	IAI47_16895	0.16	+0.9
3,580,511	+	IAI47_16895	0.16	-0.5
3,580,511	+	IAI47_16895	0.16	-0.1
3,580,511	+	IAI47_16895	0.16	+0.6
3,580,511	+	IAI47_16895	0.16	+0.9
3,580,511	+	IAI47_16895	0.16	-2.6
3,580,511	+	IAI47_16895	0.16	+0.7
3,580,511	+	IAI47_16895	0.16	-2.1
3,580,511	+	IAI47_16895	0.16	+0.2
3,580,511	+	IAI47_16895	0.16	-0.0
3,580,511	+	IAI47_16895	0.16	-1.0
3,580,511	+	IAI47_16895	0.16	+0.2
3,580,512	-	IAI47_16895	0.16	-0.5
3,580,512	-	IAI47_16895	0.16	-0.1
3,580,512	-	IAI47_16895	0.16	+1.2
3,580,512	-	IAI47_16895	0.16	-0.5
3,580,512	-	IAI47_16895	0.16	+0.5
3,580,512	-	IAI47_16895	0.16	-1.2
3,580,512	-	IAI47_16895	0.16	+0.4
3,580,512	-	IAI47_16895	0.16	-0.1
3,580,512	-	IAI47_16895	0.16	+0.1
3,580,512	-	IAI47_16895	0.16	+0.1
3,580,512	-	IAI47_16895	0.16	+1.9
3,580,512	-	IAI47_16895	0.16	-0.8
3,580,512	-	IAI47_16895	0.16	+0.5
3,580,512	-	IAI47_16895	0.16	+0.3
3,580,512	-	IAI47_16895	0.16	-1.3
3,580,512	-	IAI47_16895	0.16	+0.9
3,580,512	-	IAI47_16895	0.16	-1.5
3,580,512	-	IAI47_16895	0.16	-0.4
3,580,512	-	IAI47_16895	0.16	+0.3
3,580,512	-	IAI47_16895	0.16	+1.3
3,580,512	-	IAI47_16895	0.16	+0.0
3,580,512	-	IAI47_16895	0.16	-0.1
3,580,512	-	IAI47_16895	0.16	-0.8
3,580,512	-	IAI47_16895	0.16	+0.5
3,580,515	+	IAI47_16895	0.16	+0.5
3,580,515	+	IAI47_16895	0.16	+0.1
3,580,515	+	IAI47_16895	0.16	-0.2
3,580,515	+	IAI47_16895	0.16	-0.3
3,580,515	+	IAI47_16895	0.16	+0.1
3,580,515	+	IAI47_16895	0.16	-1.1
3,580,515	+	IAI47_16895	0.16	-0.7
3,580,516	-	IAI47_16895	0.16	+1.4
3,580,516	-	IAI47_16895	0.16	+0.0
3,580,516	-	IAI47_16895	0.16	+0.1
3,580,516	-	IAI47_16895	0.16	-0.1
3,580,516	-	IAI47_16895	0.16	-0.1
3,580,668	-	IAI47_16895	0.20	-0.2
3,580,677	+	IAI47_16895	0.21	-0.8
3,580,677	+	IAI47_16895	0.21	+0.2
3,580,677	+	IAI47_16895	0.21	-0.1
3,580,678	-	IAI47_16895	0.21	+1.3
3,580,678	-	IAI47_16895	0.21	+0.2
3,580,752	+	IAI47_16895	0.23	+0.1
3,580,752	+	IAI47_16895	0.23	+0.4
3,580,752	+	IAI47_16895	0.23	-0.0
3,580,752	+	IAI47_16895	0.23	+0.3
3,580,753	-	IAI47_16895	0.23	+0.4
3,580,753	-	IAI47_16895	0.23	-1.2
3,580,753	-	IAI47_16895	0.23	+1.5
3,580,762	-	IAI47_16895	0.23	-0.9
3,580,767	+	IAI47_16895	0.23	-0.1
3,580,843	+	IAI47_16895	0.26	-0.0
3,580,843	+	IAI47_16895	0.26	+0.1
3,580,843	+	IAI47_16895	0.26	-0.7
3,580,844	-	IAI47_16895	0.26	-1.0
3,580,844	-	IAI47_16895	0.26	-0.8
3,580,928	+	IAI47_16895	0.28	+0.2
3,580,928	+	IAI47_16895	0.28	+0.6
3,580,929	-	IAI47_16895	0.28	+1.0
3,580,929	-	IAI47_16895	0.28	+0.7
3,580,929	-	IAI47_16895	0.28	-0.1
3,580,929	-	IAI47_16895	0.28	+2.0
3,580,961	+	IAI47_16895	0.29	-0.5
3,580,961	+	IAI47_16895	0.29	-0.4
3,580,962	-	IAI47_16895	0.29	+0.5
3,580,991	+	IAI47_16895	0.30	+0.3
3,581,014	-	IAI47_16895	0.31	-0.7
3,581,044	-	IAI47_16895	0.32	-0.1
3,581,044	-	IAI47_16895	0.32	-0.9
3,581,045	+	IAI47_16895	0.32	-0.1
3,581,045	+	IAI47_16895	0.32	+0.9
3,581,045	+	IAI47_16895	0.32	-0.2
3,581,045	+	IAI47_16895	0.32	+0.5
3,581,046	-	IAI47_16895	0.32	-0.4
3,581,046	-	IAI47_16895	0.32	+1.9
3,581,046	-	IAI47_16895	0.32	+0.3
3,581,046	-	IAI47_16895	0.32	-0.5
3,581,046	-	IAI47_16895	0.32	-0.1
3,581,046	-	IAI47_16895	0.32	+0.7
3,581,073	+	IAI47_16895	0.33	-2.1
3,581,074	-	IAI47_16895	0.33	+0.2
3,581,074	-	IAI47_16895	0.33	+0.9
3,581,074	-	IAI47_16895	0.33	+0.3
3,581,076	+	IAI47_16895	0.33	+0.5
3,581,077	-	IAI47_16895	0.33	+0.0
3,581,077	-	IAI47_16895	0.33	-1.4
3,581,077	-	IAI47_16895	0.33	-0.5
3,581,114	+	IAI47_16895	0.34	+0.3
3,581,114	+	IAI47_16895	0.34	+0.1
3,581,114	+	IAI47_16895	0.34	-0.3
3,581,114	+	IAI47_16895	0.34	-1.5
3,581,114	+	IAI47_16895	0.34	-0.5
3,581,115	-	IAI47_16895	0.34	-0.1
3,581,115	-	IAI47_16895	0.34	-0.1
3,581,115	-	IAI47_16895	0.34	-0.1
3,581,142	+	IAI47_16895	0.35	-0.0
3,581,143	-	IAI47_16895	0.35	+0.9
3,581,143	-	IAI47_16895	0.35	-0.3
3,581,143	-	IAI47_16895	0.35	-1.1
3,581,146	+	IAI47_16895	0.35	+0.5
3,581,146	+	IAI47_16895	0.35	-0.1
3,581,146	+	IAI47_16895	0.35	+0.6
3,581,146	+	IAI47_16895	0.35	+0.4
3,581,147	-	IAI47_16895	0.35	-0.7
3,581,147	-	IAI47_16895	0.35	-0.1
3,581,147	-	IAI47_16895	0.35	+0.4
3,581,147	-	IAI47_16895	0.35	+0.1
3,581,158	-	IAI47_16895	0.36	+1.6
3,581,247	-	IAI47_16895	0.38	-0.1
3,581,247	-	IAI47_16895	0.38	-0.1
3,581,300	+	IAI47_16895	0.40	+0.9
3,581,300	+	IAI47_16895	0.40	-0.3
3,581,300	+	IAI47_16895	0.40	+0.6
3,581,346	+	IAI47_16895	0.41	+0.6
3,581,346	+	IAI47_16895	0.41	-1.4
3,581,347	-	IAI47_16895	0.41	-0.6
3,581,347	-	IAI47_16895	0.41	-0.2
3,581,347	-	IAI47_16895	0.41	+0.0
3,581,388	+	IAI47_16895	0.43	+0.3
3,581,388	+	IAI47_16895	0.43	-1.1
3,581,388	+	IAI47_16895	0.43	-0.4
3,581,401	+	IAI47_16895	0.43	+0.1
3,581,401	+	IAI47_16895	0.43	-0.1
3,581,402	-	IAI47_16895	0.43	-0.5
3,581,524	-	IAI47_16895	0.47	-0.1
3,581,550	+	IAI47_16895	0.48	+0.9
3,581,550	+	IAI47_16895	0.48	+0.5
3,581,550	+	IAI47_16895	0.48	+0.1
3,581,550	+	IAI47_16895	0.48	-0.7
3,581,550	+	IAI47_16895	0.48	-0.4
3,581,550	+	IAI47_16895	0.48	+0.2
3,581,551	-	IAI47_16895	0.48	+0.2
3,581,551	-	IAI47_16895	0.48	-2.3
3,581,607	+	IAI47_16895	0.49	+0.0
3,581,607	+	IAI47_16895	0.49	+0.7
3,581,607	+	IAI47_16895	0.49	-0.0
3,581,607	+	IAI47_16895	0.49	-1.4
3,581,607	+	IAI47_16895	0.49	+0.1
3,581,607	+	IAI47_16895	0.49	-0.1
3,581,607	+	IAI47_16895	0.49	-2.1
3,581,607	+	IAI47_16895	0.49	+0.9
3,581,608	-	IAI47_16895	0.49	-0.6
3,581,608	-	IAI47_16895	0.49	+0.6
3,581,608	-	IAI47_16895	0.49	-0.3
3,581,608	-	IAI47_16895	0.49	+0.5
3,581,608	-	IAI47_16895	0.49	-0.8
3,581,608	-	IAI47_16895	0.49	+0.3
3,581,608	-	IAI47_16895	0.49	+0.5
3,581,608	-	IAI47_16895	0.49	+1.5
3,581,608	-	IAI47_16895	0.49	+1.3
3,581,608	-	IAI47_16895	0.49	+0.9
3,581,608	-	IAI47_16895	0.49	-0.2
3,581,609	+	IAI47_16895	0.49	-1.1
3,581,609	+	IAI47_16895	0.49	+0.1
3,581,609	+	IAI47_16895	0.49	-0.1
3,581,609	+	IAI47_16895	0.49	+0.8
3,581,609	+	IAI47_16895	0.49	+0.1
3,581,609	+	IAI47_16895	0.49	+0.9
3,581,609	+	IAI47_16895	0.49	-0.9
3,581,609	+	IAI47_16895	0.49	-0.1
3,581,609	+	IAI47_16895	0.49	+0.2
3,581,610	-	IAI47_16895	0.50	+0.3
3,581,610	-	IAI47_16895	0.50	-0.2
3,581,610	-	IAI47_16895	0.50	+0.3
3,581,610	-	IAI47_16895	0.50	-0.1
3,581,610	-	IAI47_16895	0.50	+0.9
3,581,610	-	IAI47_16895	0.50	+0.1
3,581,610	-	IAI47_16895	0.50	-1.5
3,581,610	-	IAI47_16895	0.50	-1.1
3,581,610	-	IAI47_16895	0.50	+0.9
3,581,610	-	IAI47_16895	0.50	-0.6
3,581,610	-	IAI47_16895	0.50	+0.9
3,581,610	-	IAI47_16895	0.50	-0.1
3,581,670	+	IAI47_16895	0.51	-0.7
3,581,670	+	IAI47_16895	0.51	+0.8
3,581,670	+	IAI47_16895	0.51	-0.2
3,581,670	+	IAI47_16895	0.51	+0.9
3,581,670	+	IAI47_16895	0.51	+0.3
3,581,671	-	IAI47_16895	0.51	-1.1
3,581,671	-	IAI47_16895	0.51	-0.1
3,581,671	-	IAI47_16895	0.51	-0.7
3,581,674	+	IAI47_16895	0.51	-1.5
3,581,674	+	IAI47_16895	0.51	+1.5
3,581,674	+	IAI47_16895	0.51	-0.8
3,581,674	+	IAI47_16895	0.51	+0.9
3,581,675	-	IAI47_16895	0.52	-1.1
3,581,675	-	IAI47_16895	0.52	-0.5
3,581,675	-	IAI47_16895	0.52	-0.5
3,581,675	-	IAI47_16895	0.52	+0.6
3,581,780	+	IAI47_16895	0.55	-0.3
3,581,781	-	IAI47_16895	0.55	+0.2
3,581,781	-	IAI47_16895	0.55	-0.3
3,581,781	-	IAI47_16895	0.55	-1.0
3,581,890	-	IAI47_16895	0.58	+0.1
3,581,890	-	IAI47_16895	0.58	-1.1
3,581,909	-	IAI47_16895	0.59	+0.6
3,582,046	-	IAI47_16895	0.63	+0.9
3,582,046	-	IAI47_16895	0.63	+0.1
3,582,088	-	IAI47_16895	0.64	+1.9
3,582,110	+	IAI47_16895	0.65	-0.4
3,582,110	+	IAI47_16895	0.65	-0.5
3,582,110	+	IAI47_16895	0.65	+0.1
3,582,110	+	IAI47_16895	0.65	-0.6
3,582,110	+	IAI47_16895	0.65	-0.7
3,582,111	-	IAI47_16895	0.65	+0.9
3,582,111	-	IAI47_16895	0.65	-0.0
3,582,111	-	IAI47_16895	0.65	+0.0
3,582,111	-	IAI47_16895	0.65	-1.5
3,582,111	-	IAI47_16895	0.65	+1.1
3,582,169	-	IAI47_16895	0.67	-1.7
3,582,364	+	IAI47_16895	0.73	+2.7
3,582,364	+	IAI47_16895	0.73	-0.6
3,582,364	+	IAI47_16895	0.73	-1.1
3,582,364	+	IAI47_16895	0.73	-1.5
3,582,364	+	IAI47_16895	0.73	-0.2
3,582,364	+	IAI47_16895	0.73	-1.1
3,582,364	+	IAI47_16895	0.73	-0.1
3,582,365	-	IAI47_16895	0.73	+0.9
3,582,393	+	IAI47_16895	0.74	+0.9
3,582,393	+	IAI47_16895	0.74	-0.4
3,582,393	+	IAI47_16895	0.74	+1.3
3,582,468	+	IAI47_16895	0.76	+0.1
3,582,500	+	IAI47_16895	0.77	+0.3
3,582,501	-	IAI47_16895	0.77	+0.0
3,582,572	+	IAI47_16895	0.79	-0.1
3,582,572	+	IAI47_16895	0.79	-0.9
3,582,572	+	IAI47_16895	0.79	-0.1
3,582,572	+	IAI47_16895	0.79	-0.1
3,582,572	+	IAI47_16895	0.79	+0.3
3,582,573	-	IAI47_16895	0.79	-0.1
3,582,573	-	IAI47_16895	0.79	+0.5
3,582,573	-	IAI47_16895	0.79	+0.9
3,582,603	+	IAI47_16895	0.80	+0.5
3,582,603	+	IAI47_16895	0.80	-0.9
3,582,604	-	IAI47_16895	0.80	+0.5
3,582,627	+	IAI47_16895	0.81	-0.3
3,582,627	+	IAI47_16895	0.81	-0.7
3,582,628	-	IAI47_16895	0.81	-1.5
3,582,628	-	IAI47_16895	0.81	-0.3
3,582,751	+	IAI47_16895	0.85	+0.5
3,582,751	+	IAI47_16895	0.85	+0.9
3,582,751	+	IAI47_16895	0.85	+0.5
3,582,752	-	IAI47_16895	0.85	-1.0
3,582,752	-	IAI47_16895	0.85	+2.5
3,582,752	-	IAI47_16895	0.85	+0.3
3,582,752	-	IAI47_16895	0.85	-0.1
3,582,765	+	IAI47_16895	0.85	+0.5
3,582,846	+	IAI47_16895	0.88	+0.3
3,582,855	+	IAI47_16895	0.88	+0.4
3,582,856	-	IAI47_16895	0.88	-0.1
3,582,857	+	IAI47_16895	0.88	+1.2
3,582,857	+	IAI47_16895	0.88	-0.2
3,582,858	-	IAI47_16895	0.88	+0.8
3,582,970	-			+0.0
3,583,031	-			-0.1
3,583,031	-			-1.1
3,583,119	-			+0.3
3,583,156	-			+1.1
3,583,158	-			-0.9
3,583,221	+			-0.6
3,583,536	-	IAI47_16900	0.25	+1.7
3,583,536	-	IAI47_16900	0.25	+1.1
3,583,623	+	IAI47_16900	0.32	+0.5
3,583,623	+	IAI47_16900	0.32	-2.3
3,583,624	-	IAI47_16900	0.32	+0.5
3,583,736	+	IAI47_16900	0.41	-1.7
3,583,867	+	IAI47_16900	0.52	-0.7
3,583,867	+	IAI47_16900	0.52	-0.6
3,583,868	-	IAI47_16900	0.52	-0.1
3,583,868	-	IAI47_16900	0.52	+0.3
3,583,868	-	IAI47_16900	0.52	-1.9
3,583,868	-	IAI47_16900	0.52	-1.5
3,583,927	+	IAI47_16900	0.57	-1.1
3,584,063	-	IAI47_16900	0.68	+0.1
3,584,083	+	IAI47_16900	0.70	-0.4
3,584,083	+	IAI47_16900	0.70	-0.5
3,584,083	+	IAI47_16900	0.70	+1.4

Or see this region's nucleotide sequence