Strain Fitness in Pantoea sp. MT58 around IAI47_13260

Experiment: Ying_AminoAcid20 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 1
2,802,747	-		IAI47_13255	0.34	-1.7
2,802,747	-		IAI47_13255	0.34	-0.4
2,802,747	-		IAI47_13255	0.34	+0.6
2,802,840	+		IAI47_13255	0.42	-0.8
2,802,841	-		IAI47_13255	0.42	+1.5
2,802,841	-		IAI47_13255	0.42	-1.5
2,802,841	-		IAI47_13255	0.42	+0.3
2,802,972	+		IAI47_13255	0.53	-0.7
2,802,972	+		IAI47_13255	0.53	-0.1
2,802,984	+		IAI47_13255	0.54	+0.4
2,802,999	+		IAI47_13255	0.55	-0.5
2,803,000	-		IAI47_13255	0.55	+0.0
2,803,000	-		IAI47_13255	0.55	-0.9
2,803,128	+		IAI47_13255	0.65	-0.9
2,803,128	+		IAI47_13255	0.65	-0.7
2,803,128	+		IAI47_13255	0.65	-0.1
2,803,129	-		IAI47_13255	0.66	-0.2
2,803,129	-		IAI47_13255	0.66	-1.1
2,803,268	+		IAI47_13255	0.77	-1.5
2,803,268	+		IAI47_13255	0.77	+0.3
2,803,269	-		IAI47_13255	0.77	-1.3
2,803,269	-		IAI47_13255	0.77	+0.9
2,803,269	-		IAI47_13255	0.77	-0.9
2,803,332	+		IAI47_13255	0.82	-1.1
2,803,332	+		IAI47_13255	0.82	+0.2
2,803,332	+		IAI47_13255	0.82	+0.2
2,803,333	-		IAI47_13255	0.82	-0.9
2,803,429	+				+0.1
2,803,429	+				+0.9
2,803,437	+				-0.3
2,803,438	-				-1.3
2,803,478	+				-0.7
2,803,478	+				-1.3
2,803,479	-				-1.1
2,803,479	-				-3.0
2,803,479	-				+0.1
2,803,497	+				+1.1
2,803,498	-				+0.3
2,803,498	-				-0.5
2,803,519	+				+1.0
2,803,523	+				-0.1
2,803,524	+				-1.5
2,803,524	+				+0.6
2,803,524	+				-1.0
2,803,525	-				-0.0
2,803,525	-				-1.1
2,803,525	-				-0.7
2,803,525	-				-1.4
2,803,525	-				+1.0
2,803,528	+				-0.0
2,803,528	+				-1.1
2,803,529	-				-1.6
2,803,529	-				-0.1
2,803,529	-				-0.6
2,803,529	-				+0.1
2,803,556	+				+0.3
2,803,556	+				-0.6
2,803,557	-				-0.4
2,803,571	+				-0.9
2,803,571	+				+0.2
2,803,593	-				+2.4
2,803,598	+				+1.1
2,803,599	-				+0.4
2,803,688	+				-1.6
2,803,688	+				+0.0
2,803,689	-				-1.5
2,803,689	-				+0.1
2,803,697	+				+1.2
2,803,698	-				+0.3
2,803,698	-				-2.8
2,803,712	+				-1.1
2,803,713	-				-1.8
2,803,771	+		IAI47_13260	0.10	+0.9
2,803,772	-		IAI47_13260	0.11	-0.2
2,803,884	+		IAI47_13260	0.19	-0.6
2,803,884	+		IAI47_13260	0.19	-1.1
2,803,885	-		IAI47_13260	0.19	+1.9
2,803,925	+		IAI47_13260	0.22	-1.1
2,803,941	+		IAI47_13260	0.23	-0.1
2,803,941	+		IAI47_13260	0.23	-1.4
2,803,941	+		IAI47_13260	0.23	-0.7
2,803,941	+		IAI47_13260	0.23	-0.6
2,803,942	-		IAI47_13260	0.23	+0.5
2,803,942	-		IAI47_13260	0.23	+0.9
2,803,965	+		IAI47_13260	0.25	-1.1
2,803,966	-		IAI47_13260	0.25	+0.0
2,803,966	-		IAI47_13260	0.25	-0.1
2,803,966	-		IAI47_13260	0.25	+0.3
2,803,989	+		IAI47_13260	0.27	-0.7
2,803,990	-		IAI47_13260	0.27	-0.4
2,803,990	-		IAI47_13260	0.27	-1.7
2,803,990	-		IAI47_13260	0.27	-0.8
2,804,019	+		IAI47_13260	0.29	+0.0
2,804,019	+		IAI47_13260	0.29	-0.1
2,804,019	+		IAI47_13260	0.29	-0.5
2,804,019	+		IAI47_13260	0.29	-0.5
2,804,019	+		IAI47_13260	0.29	-1.9
2,804,019	+		IAI47_13260	0.29	-1.5
2,804,020	-		IAI47_13260	0.29	+0.0
2,804,020	-		IAI47_13260	0.29	-0.1
2,804,020	-		IAI47_13260	0.29	-1.8
2,804,020	-		IAI47_13260	0.29	-1.5
2,804,101	-		IAI47_13260	0.35	-0.0
2,804,101	-		IAI47_13260	0.35	-0.7
2,804,101	-		IAI47_13260	0.35	-1.7
2,804,101	-		IAI47_13260	0.35	-0.3
2,804,106	+		IAI47_13260	0.35	-0.1
2,804,106	+		IAI47_13260	0.35	+0.2
2,804,107	-		IAI47_13260	0.35	-1.9
2,804,107	-		IAI47_13260	0.35	-1.1
2,804,107	-		IAI47_13260	0.35	-0.4
2,804,153	+		IAI47_13260	0.39	-2.3
2,804,153	+		IAI47_13260	0.39	-1.5
2,804,172	+		IAI47_13260	0.40	-1.7
2,804,173	-		IAI47_13260	0.40	+0.0
2,804,173	-		IAI47_13260	0.40	-1.5
2,804,173	-		IAI47_13260	0.40	-0.1
2,804,260	+		IAI47_13260	0.47	-0.3
2,804,260	+		IAI47_13260	0.47	+0.1
2,804,319	-		IAI47_13260	0.51	+1.4
2,804,405	+		IAI47_13260	0.57	+1.5
2,804,405	+		IAI47_13260	0.57	+0.3
2,804,405	+		IAI47_13260	0.57	-1.3
2,804,550	+		IAI47_13260	0.68	+1.9
2,804,550	+		IAI47_13260	0.68	-0.4
2,804,550	+		IAI47_13260	0.68	-1.4
2,804,550	+		IAI47_13260	0.68	-0.5
2,804,550	+		IAI47_13260	0.68	-1.9
2,804,550	+		IAI47_13260	0.68	-0.8
2,804,550	+		IAI47_13260	0.68	-0.7
2,804,551	-		IAI47_13260	0.68	-1.6
2,804,551	-		IAI47_13260	0.68	-1.1
2,804,551	-		IAI47_13260	0.68	-1.5
2,804,551	-		IAI47_13260	0.68	+0.4
2,804,552	+		IAI47_13260	0.68	-0.1
2,804,552	+		IAI47_13260	0.68	-0.5
2,804,634	+		IAI47_13260	0.74	+1.0
2,804,635	-		IAI47_13260	0.74	+0.4
2,804,759	+		IAI47_13260	0.83	-0.1
2,804,760	-		IAI47_13260	0.83	+0.9
2,804,839	+		IAI47_13260	0.89	-0.3
2,804,840	-		IAI47_13260	0.89	-1.7
2,804,889	+				+1.4
2,804,889	+				-0.1
2,804,889	+				-0.6
2,804,889	+				-1.6
2,804,890	-				-1.1
2,804,999	+				+0.1
2,804,999	+				-0.7
2,805,055	+		IAI47_13265	0.14	+0.1
2,805,101	-		IAI47_13265	0.22	+0.9
2,805,189	+		IAI47_13265	0.38	-0.3
2,805,258	+		IAI47_13265	0.51	-0.7
2,805,295	+		IAI47_13265	0.58	-0.3
2,805,295	+		IAI47_13265	0.58	-0.6
2,805,296	-		IAI47_13265	0.58	+0.2
2,805,296	-		IAI47_13265	0.58	-3.0
2,805,296	-		IAI47_13265	0.58	+0.1
2,805,298	+		IAI47_13265	0.58	-0.8
2,805,500	-				-0.7
2,805,508	+				-0.8
2,805,509	-				+1.4
2,805,509	-				-0.7
2,805,509	-				-0.4
2,805,509	-				-0.1
2,805,509	-				+0.0
2,805,509	-				+0.5
2,805,541	+				-1.7
2,805,541	+				-0.4
2,805,542	-				+0.5
2,805,542	-				-1.7
2,805,571	+				+0.2
2,805,571	+				-0.5
2,805,571	+				+0.1
2,805,572	-				+0.9
2,805,572	-				-1.9
2,805,572	-				-0.1
2,805,724	+		IAI47_13270	0.29	+0.1
2,805,724	+		IAI47_13270	0.29	+0.4
2,805,724	+		IAI47_13270	0.29	-0.8
2,805,724	+		IAI47_13270	0.29	-0.1
2,805,724	+		IAI47_13270	0.29	+0.8
2,805,724	+		IAI47_13270	0.29	+0.4
2,805,724	+		IAI47_13270	0.29	+0.4
2,805,724	+		IAI47_13270	0.29	+0.2
2,805,725	-		IAI47_13270	0.29	-0.9
2,805,725	-		IAI47_13270	0.29	-0.4
2,805,730	+		IAI47_13270	0.29	+0.9
2,805,730	+		IAI47_13270	0.29	-0.3
2,805,730	+		IAI47_13270	0.29	-1.9
2,805,731	-		IAI47_13270	0.30	+0.9
2,805,731	-		IAI47_13270	0.30	-0.6
2,805,731	-		IAI47_13270	0.30	+0.3
2,805,731	-		IAI47_13270	0.30	+0.3
2,805,749	-		IAI47_13270	0.32	+0.5
2,805,764	-		IAI47_13270	0.34	-0.1
2,805,764	-		IAI47_13270	0.34	-0.9
2,805,971	+		IAI47_13270	0.61	+0.4
2,805,971	+		IAI47_13270	0.61	+1.9
2,805,971	+		IAI47_13270	0.61	-2.7
2,805,971	+		IAI47_13270	0.61	-0.1
2,805,971	+		IAI47_13270	0.61	-1.3
2,805,971	+		IAI47_13270	0.61	+0.5
2,805,972	-		IAI47_13270	0.62	+0.3
2,805,972	-		IAI47_13270	0.62	+0.3
2,805,972	-		IAI47_13270	0.62	+0.4
2,805,972	-		IAI47_13270	0.62	+0.9
2,805,972	-		IAI47_13270	0.62	-0.8
2,805,972	-		IAI47_13270	0.62	+0.1
2,805,972	-		IAI47_13270	0.62	-1.1
2,805,972	-		IAI47_13270	0.62	+0.4
2,805,972	-		IAI47_13270	0.62	+1.4