Strain Fitness in Pantoea sp. MT58 around IAI47_08775

Experiment: Ying_AminoAcid20 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 1
1,852,986	+		IAI47_08770	0.56	+1.7
1,853,030	+		IAI47_08770	0.61	-2.0
1,853,031	-		IAI47_08770	0.61	+0.7
1,853,126	+		IAI47_08770	0.71	+0.0
1,853,149	+		IAI47_08770	0.73	-0.1
1,853,149	+		IAI47_08770	0.73	+0.0
1,853,149	+		IAI47_08770	0.73	-0.5
1,853,149	+		IAI47_08770	0.73	+0.3
1,853,150	-		IAI47_08770	0.73	+1.3
1,853,150	-		IAI47_08770	0.73	+1.4
1,853,160	-		IAI47_08770	0.74	+0.2
1,853,171	+		IAI47_08770	0.75	+0.3
1,853,187	-		IAI47_08770	0.77	+0.7
1,853,207	+		IAI47_08770	0.79	+2.9
1,853,208	-		IAI47_08770	0.79	+0.3
1,853,237	+		IAI47_08770	0.82	-0.2
1,853,237	+		IAI47_08770	0.82	-0.6
1,853,237	+		IAI47_08770	0.82	+0.3
1,853,261	+		IAI47_08770	0.85	+0.3
1,853,261	+		IAI47_08770	0.85	+1.0
1,853,261	+		IAI47_08770	0.85	-0.7
1,853,262	-		IAI47_08770	0.85	+0.1
1,853,262	-		IAI47_08770	0.85	+0.0
1,853,262	-		IAI47_08770	0.85	+1.1
1,853,262	-		IAI47_08770	0.85	-1.1
1,853,263	+		IAI47_08770	0.85	+0.5
1,853,264	-		IAI47_08770	0.85	+0.3
1,853,264	-		IAI47_08770	0.85	+1.5
1,853,384	+				-0.2
1,853,391	+				+0.7
1,853,391	+				-0.8
1,853,391	+				+0.3
1,853,391	+				-0.2
1,853,391	+				+1.4
1,853,392	-				+0.1
1,853,392	-				+0.0
1,853,413	+				+0.9
1,853,414	-				+0.4
1,853,414	-				+0.5
1,853,455	+				+0.2
1,853,455	+				+1.4
1,853,455	+				-0.1
1,853,456	-				+0.2
1,853,456	-				+0.2
1,853,456	-				+0.1
1,853,456	-				+0.4
1,853,508	+				+1.7
1,853,529	+				+0.9
1,853,530	-				-0.1
1,853,530	-				+0.1
1,853,539	-				-0.2
1,853,546	+				+2.4
1,853,560	-				-0.1
1,853,584	+				+1.4
1,853,602	+				+1.1
1,853,602	+				+0.1
1,853,603	-				-0.0
1,853,635	+				+0.1
1,853,636	-				+0.3
1,853,636	-				-0.2
1,853,705	+				+0.7
1,853,706	-				-0.3
1,853,706	-				-0.4
1,853,706	-				-1.1
1,853,706	-				-0.4
1,853,710	+				-1.4
1,853,710	+				-0.3
1,853,722	+				-1.5
1,853,723	-				-0.5
1,853,725	+				-0.7
1,853,736	-				+0.6
1,853,756	+				-0.1
1,853,756	+				-0.3
1,853,875	+				-0.6
1,853,875	+				-0.4
1,853,912	+				+0.1
1,853,912	+				-0.7
1,853,912	+				-0.6
1,853,913	-				-2.1
1,853,913	-				+0.6
1,853,955	+				+0.3
1,853,955	+				-0.3
1,853,983	-				+1.9
1,854,007	+				+0.3
1,854,008	-				-2.3
1,854,085	+		IAI47_08775	0.11	+0.5
1,854,085	+		IAI47_08775	0.11	+0.2
1,854,086	-		IAI47_08775	0.11	+0.3
1,854,086	-		IAI47_08775	0.11	-0.4
1,854,151	-		IAI47_08775	0.15	-0.1
1,854,180	+		IAI47_08775	0.17	+0.2
1,854,180	+		IAI47_08775	0.17	+0.6
1,854,180	+		IAI47_08775	0.17	-1.3
1,854,210	+		IAI47_08775	0.18	+0.4
1,854,210	+		IAI47_08775	0.18	-0.5
1,854,210	+		IAI47_08775	0.18	-1.2
1,854,211	-		IAI47_08775	0.19	+0.1
1,854,211	-		IAI47_08775	0.19	-0.0
1,854,215	-		IAI47_08775	0.19	-1.3
1,854,272	-		IAI47_08775	0.22	-0.6
1,854,360	+		IAI47_08775	0.28	+0.5
1,854,360	+		IAI47_08775	0.28	+0.9
1,854,360	+		IAI47_08775	0.28	+0.3
1,854,360	+		IAI47_08775	0.28	+1.4
1,854,360	+		IAI47_08775	0.28	-0.7
1,854,361	-		IAI47_08775	0.28	-2.7
1,854,364	+		IAI47_08775	0.28	-0.6
1,854,364	+		IAI47_08775	0.28	-0.0
1,854,364	+		IAI47_08775	0.28	+0.1
1,854,364	+		IAI47_08775	0.28	-0.6
1,854,365	-		IAI47_08775	0.28	+0.1
1,854,445	+		IAI47_08775	0.33	-1.0
1,854,445	+		IAI47_08775	0.33	-1.3
1,854,445	+		IAI47_08775	0.33	+0.1
1,854,445	+		IAI47_08775	0.33	-2.3
1,854,446	-		IAI47_08775	0.33	-0.5
1,854,446	-		IAI47_08775	0.33	+0.9
1,854,499	-		IAI47_08775	0.37	-0.3
1,854,519	+		IAI47_08775	0.38	-1.8
1,854,541	+		IAI47_08775	0.39	-0.3
1,854,554	+		IAI47_08775	0.40	-1.6
1,854,554	+		IAI47_08775	0.40	+0.1
1,854,554	+		IAI47_08775	0.40	-2.5
1,854,555	-		IAI47_08775	0.40	-1.2
1,854,555	-		IAI47_08775	0.40	+0.5
1,854,555	-		IAI47_08775	0.40	-0.5
1,854,560	+		IAI47_08775	0.41	-0.6
1,854,561	-		IAI47_08775	0.41	-0.6
1,854,561	-		IAI47_08775	0.41	-0.1
1,854,561	-		IAI47_08775	0.41	-0.4
1,854,598	+		IAI47_08775	0.43	+0.5
1,854,658	+		IAI47_08775	0.47	+0.1
1,854,658	+		IAI47_08775	0.47	+0.4
1,854,715	+		IAI47_08775	0.50	+0.3
1,854,716	-		IAI47_08775	0.50	-0.5
1,854,779	-		IAI47_08775	0.54	-3.0
1,854,794	+		IAI47_08775	0.55	-0.1
1,854,794	+		IAI47_08775	0.55	-1.7
1,854,794	+		IAI47_08775	0.55	-0.6
1,854,794	+		IAI47_08775	0.55	-0.8
1,854,794	+		IAI47_08775	0.55	-1.5
1,854,794	+		IAI47_08775	0.55	+0.9
1,854,795	-		IAI47_08775	0.55	-1.3
1,854,795	-		IAI47_08775	0.55	-1.3
1,854,795	-		IAI47_08775	0.55	+0.9
1,854,795	-		IAI47_08775	0.55	-0.5
1,854,795	-		IAI47_08775	0.55	+0.4
1,854,795	-		IAI47_08775	0.55	+0.2
1,854,795	-		IAI47_08775	0.55	-0.8
1,854,795	-		IAI47_08775	0.55	+0.7
1,854,802	+		IAI47_08775	0.56	-0.1
1,854,802	+		IAI47_08775	0.56	-1.1
1,854,975	+		IAI47_08775	0.67	-0.8
1,854,975	+		IAI47_08775	0.67	-0.1
1,854,976	-		IAI47_08775	0.67	-0.5
1,855,114	+		IAI47_08775	0.76	-0.3
1,855,114	+		IAI47_08775	0.76	-2.1
1,855,114	+		IAI47_08775	0.76	-1.0
1,855,114	+		IAI47_08775	0.76	+0.5
1,855,225	+		IAI47_08775	0.83	-0.7
1,855,225	+		IAI47_08775	0.83	-0.8
1,855,226	-		IAI47_08775	0.83	+1.7
1,855,226	-		IAI47_08775	0.83	-0.6
1,855,251	+		IAI47_08775	0.84	-1.4
1,855,251	+		IAI47_08775	0.84	+0.4
1,855,252	-		IAI47_08775	0.84	-0.7
1,855,255	+		IAI47_08775	0.85	-0.2
1,855,255	+		IAI47_08775	0.85	+0.3
1,855,256	-		IAI47_08775	0.85	-1.3
1,855,256	-		IAI47_08775	0.85	-0.1
1,855,371	+				-0.6
1,855,389	+				+0.2
1,855,389	+				-2.0
1,855,389	+				+0.3
1,855,389	+				-1.1
1,855,389	+				+2.4
1,855,389	+				-0.8
1,855,389	+				-0.6
1,855,390	-				-1.5
1,855,390	-				-2.1
1,855,390	-				-0.9
1,855,437	-				+0.7
1,855,468	+				-2.2
1,855,469	-				-0.1
1,855,496	+				+0.4
1,855,497	-				-0.1
1,855,515	+				+1.9
1,855,515	+				+0.1
1,855,516	-				+1.2
1,855,516	-				-0.5
1,855,516	-				-0.4
1,855,516	-				-2.6
1,855,531	+				-1.5
1,855,531	+				-0.1
1,855,544	+				+0.9
1,855,590	-				-0.7
1,855,615	+				+0.4
1,855,615	+				+0.4
1,855,616	-				+0.9
1,855,616	-				-0.1
1,855,616	-				+1.0
1,855,616	-				+0.5
1,855,616	-				-0.1
1,855,661	+				+1.2
1,855,661	+				-0.5
1,855,661	+				-0.1
1,855,661	+				+0.2
1,855,662	-				+1.7
1,855,664	+				+0.0
1,855,664	+				-0.9
1,855,665	-				+1.3
1,855,665	-				+0.4
1,855,665	-				+0.2
1,855,700	+				+1.9
1,855,700	+				-0.3
1,855,701	-				+0.5
1,855,813	-		IAI47_08780	0.14	+2.4
1,855,868	+		IAI47_08780	0.18	-0.3
1,855,868	+		IAI47_08780	0.18	-0.1
1,855,868	+		IAI47_08780	0.18	+0.6
1,855,868	+		IAI47_08780	0.18	+0.5
1,855,869	-		IAI47_08780	0.18	-1.0
1,855,869	-		IAI47_08780	0.18	-0.2
1,855,869	-		IAI47_08780	0.18	+1.7
1,855,881	+		IAI47_08780	0.19	+0.2
1,855,881	+		IAI47_08780	0.19	-0.7
1,855,881	+		IAI47_08780	0.19	+0.3
1,855,881	+		IAI47_08780	0.19	-1.5
1,855,881	+		IAI47_08780	0.19	-2.0
1,855,881	+		IAI47_08780	0.19	-0.0
1,855,882	-		IAI47_08780	0.19	+0.1
1,855,882	-		IAI47_08780	0.19	-0.1
1,855,882	-		IAI47_08780	0.19	+0.3
1,855,938	+		IAI47_08780	0.22	+1.9
1,855,939	-		IAI47_08780	0.22	-1.3
1,856,043	+		IAI47_08780	0.29	+0.2
1,856,043	+		IAI47_08780	0.29	-0.3
1,856,043	+		IAI47_08780	0.29	+0.2
1,856,044	-		IAI47_08780	0.29	+0.9
1,856,082	+		IAI47_08780	0.32	+0.5
1,856,082	+		IAI47_08780	0.32	-0.5
1,856,083	-		IAI47_08780	0.32	+0.1
1,856,119	+		IAI47_08780	0.34	+1.2
1,856,119	+		IAI47_08780	0.34	-0.0
1,856,119	+		IAI47_08780	0.34	+0.3
1,856,229	+		IAI47_08780	0.41	+0.2
1,856,229	+		IAI47_08780	0.41	+0.6
1,856,229	+		IAI47_08780	0.41	+0.9
1,856,230	-		IAI47_08780	0.41	+0.1
1,856,230	-		IAI47_08780	0.41	+0.3
1,856,230	-		IAI47_08780	0.41	+1.1
1,856,245	+		IAI47_08780	0.42	+0.0
1,856,245	+		IAI47_08780	0.42	-0.1
1,856,245	+		IAI47_08780	0.42	-0.1
1,856,246	-		IAI47_08780	0.42	-0.5
1,856,253	+		IAI47_08780	0.43	+1.9
1,856,304	+		IAI47_08780	0.46	-0.1
1,856,305	-		IAI47_08780	0.46	+1.0
1,856,327	+		IAI47_08780	0.47	-1.1
1,856,327	+		IAI47_08780	0.47	-1.0
1,856,328	-		IAI47_08780	0.47	-0.5
1,856,328	-		IAI47_08780	0.47	-0.7
1,856,328	-		IAI47_08780	0.47	+0.9
1,856,380	-		IAI47_08780	0.51	-0.1
1,856,380	-		IAI47_08780	0.51	+0.2
1,856,380	-		IAI47_08780	0.51	-1.7
1,856,382	-		IAI47_08780	0.51	+0.6
1,856,382	-		IAI47_08780	0.51	+0.1
1,856,382	-		IAI47_08780	0.51	+0.0
1,856,382	-		IAI47_08780	0.51	-0.7
1,856,388	+		IAI47_08780	0.51	+0.2
1,856,388	+		IAI47_08780	0.51	+0.1
1,856,389	-		IAI47_08780	0.51	+2.4
1,856,466	-		IAI47_08780	0.56	-1.1
1,856,466	-		IAI47_08780	0.56	-1.0
1,856,466	-		IAI47_08780	0.56	-0.1
1,856,472	+		IAI47_08780	0.57	+0.3
1,856,472	+		IAI47_08780	0.57	-0.4
1,856,472	+		IAI47_08780	0.57	+0.9
1,856,473	-		IAI47_08780	0.57	+0.4
1,856,473	-		IAI47_08780	0.57	+0.9