Strain Fitness in Pantoea sp. MT58 around IAI47_08030

Experiment: Ying_AminoAcid20 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 1
1,694,658	+				-0.0
1,694,658	+				-0.2
1,694,658	+				-0.9
1,694,658	+				-0.8
1,694,659	-				-0.3
1,694,659	-				-0.4
1,694,687	-				+0.1
1,694,755	+		IAI47_08025	0.10	+0.5
1,694,755	+		IAI47_08025	0.10	+0.3
1,694,755	+		IAI47_08025	0.10	+0.2
1,694,755	+		IAI47_08025	0.10	+0.5
1,694,756	-		IAI47_08025	0.11	+0.8
1,694,756	-		IAI47_08025	0.11	+0.6
1,694,756	-		IAI47_08025	0.11	+0.3
1,695,091	+		IAI47_08025	0.44	+1.2
1,695,091	+		IAI47_08025	0.44	-0.8
1,695,092	-		IAI47_08025	0.44	-0.2
1,695,092	-		IAI47_08025	0.44	-0.7
1,695,166	+		IAI47_08025	0.52	+0.3
1,695,167	-		IAI47_08025	0.52	-0.0
1,695,215	-		IAI47_08025	0.57	+0.1
1,695,283	+		IAI47_08025	0.64	+0.8
1,695,284	-		IAI47_08025	0.64	-1.6
1,695,310	+		IAI47_08025	0.66	+0.6
1,695,311	-		IAI47_08025	0.66	-0.4
1,695,420	+		IAI47_08025	0.77	-0.3
1,695,420	+		IAI47_08025	0.77	-0.4
1,695,433	+		IAI47_08025	0.79	-0.0
1,695,433	+		IAI47_08025	0.79	+0.4
1,695,433	+		IAI47_08025	0.79	+0.4
1,695,433	+		IAI47_08025	0.79	+0.5
1,695,434	-		IAI47_08025	0.79	-0.6
1,695,434	-		IAI47_08025	0.79	-0.0
1,695,517	+		IAI47_08025	0.87	-0.8
1,695,517	+		IAI47_08025	0.87	-0.5
1,695,517	+		IAI47_08025	0.87	-0.3
1,695,517	+		IAI47_08025	0.87	+1.1
1,695,518	-		IAI47_08025	0.87	+0.3
1,695,536	-		IAI47_08025	0.89	+0.8
1,695,536	-		IAI47_08025	0.89	+0.8
1,695,536	-		IAI47_08025	0.89	-0.5
1,695,536	-		IAI47_08025	0.89	-1.0
1,695,643	+				+0.6
1,695,643	+				-0.8
1,695,643	+				-0.1
1,695,643	+				-0.8
1,695,644	-				-0.0
1,695,644	-				+0.2
1,695,644	-				+0.7
1,695,644	-				-0.3
1,695,644	-				-0.8
1,695,644	-				-1.1
1,695,651	+				+0.7
1,695,671	-				+0.4
1,695,671	-				+0.4
1,695,756	+				+0.8
1,695,756	+				-1.0
1,695,756	+				-0.3
1,695,756	+				-0.0
1,695,757	-				-0.2
1,695,757	-				-1.2
1,695,757	-				+0.2
1,695,757	-				+1.8
1,695,757	-				+0.2
1,695,795	+				-0.4
1,695,796	-				+0.4
1,695,796	-				-0.3
1,695,796	-				-0.2
1,695,796	-				-1.1
1,695,942	+		IAI47_08030	0.17	+0.8
1,695,942	+		IAI47_08030	0.17	-0.5
1,696,020	+		IAI47_08030	0.22	+0.8
1,696,021	-		IAI47_08030	0.22	-0.4
1,696,021	-		IAI47_08030	0.22	+0.2
1,696,068	-		IAI47_08030	0.25	-1.2
1,696,068	-		IAI47_08030	0.25	-1.3
1,696,140	+		IAI47_08030	0.29	+0.6
1,696,140	+		IAI47_08030	0.29	+0.0
1,696,140	+		IAI47_08030	0.29	+0.6
1,696,140	+		IAI47_08030	0.29	-0.2
1,696,141	-		IAI47_08030	0.29	-0.4
1,696,141	-		IAI47_08030	0.29	+0.5
1,696,141	-		IAI47_08030	0.29	+0.6
1,696,186	+		IAI47_08030	0.32	-0.9
1,696,186	+		IAI47_08030	0.32	-0.8
1,696,235	+		IAI47_08030	0.34	-1.2
1,696,235	+		IAI47_08030	0.34	-0.1
1,696,235	+		IAI47_08030	0.34	-2.0
1,696,235	+		IAI47_08030	0.34	+1.6
1,696,235	+		IAI47_08030	0.34	+0.2
1,696,235	+		IAI47_08030	0.34	+0.8
1,696,236	-		IAI47_08030	0.34	-0.4
1,696,323	+		IAI47_08030	0.40	-0.8
1,696,464	+		IAI47_08030	0.48	+1.2
1,696,464	+		IAI47_08030	0.48	+0.8
1,696,465	-		IAI47_08030	0.48	-1.4
1,696,465	-		IAI47_08030	0.48	-2.3
1,696,465	-		IAI47_08030	0.48	+0.7
1,696,500	+		IAI47_08030	0.50	+0.5
1,696,501	-		IAI47_08030	0.50	+1.8
1,696,501	-		IAI47_08030	0.50	+0.8
1,696,515	-		IAI47_08030	0.51	-1.2
1,696,515	-		IAI47_08030	0.51	+0.9
1,696,515	-		IAI47_08030	0.51	+0.8
1,696,614	+		IAI47_08030	0.56	+0.1
1,696,614	+		IAI47_08030	0.56	+0.2
1,696,614	+		IAI47_08030	0.56	+0.1
1,696,614	+		IAI47_08030	0.56	+0.8
1,696,614	+		IAI47_08030	0.56	+0.5
1,696,615	-		IAI47_08030	0.56	+2.3
1,696,615	-		IAI47_08030	0.56	-0.1
1,696,649	+		IAI47_08030	0.58	-0.2
1,696,649	+		IAI47_08030	0.58	+1.1
1,696,649	+		IAI47_08030	0.58	+0.5
1,696,650	-		IAI47_08030	0.58	-0.3
1,696,650	-		IAI47_08030	0.58	+0.1
1,696,825	+		IAI47_08030	0.69	-0.9
1,696,826	-		IAI47_08030	0.69	+0.2
1,696,867	+		IAI47_08030	0.71	+1.3
1,696,867	+		IAI47_08030	0.71	+0.2
1,696,867	+		IAI47_08030	0.71	-1.1
1,696,867	+		IAI47_08030	0.71	-1.3
1,696,868	-		IAI47_08030	0.71	+0.3
1,696,868	-		IAI47_08030	0.71	-0.3
1,696,868	-		IAI47_08030	0.71	-0.6
1,696,868	-		IAI47_08030	0.71	+1.1
1,696,964	+		IAI47_08030	0.77	+1.2
1,696,968	+		IAI47_08030	0.77	+1.8
1,697,101	+		IAI47_08030	0.85	+0.6
1,697,101	+		IAI47_08030	0.85	-0.3
1,697,102	-		IAI47_08030	0.85	-0.4
1,697,102	-		IAI47_08030	0.85	+0.0
1,697,190	+		IAI47_08030	0.90	+1.1
1,697,190	+		IAI47_08030	0.90	+0.8
1,697,193	+		IAI47_08030	0.90	+1.0
1,697,193	+		IAI47_08030	0.90	+0.5
1,697,193	+		IAI47_08030	0.90	-0.3
1,697,193	+		IAI47_08030	0.90	+0.6
1,697,193	+		IAI47_08030	0.90	-1.4
1,697,193	+		IAI47_08030	0.90	+1.6
1,697,193	+		IAI47_08030	0.90	+0.2
1,697,194	-		IAI47_08030	0.90	+1.2
1,697,194	-		IAI47_08030	0.90	-1.2
1,697,194	-		IAI47_08030	0.90	-0.4
1,697,195	+				+0.1
1,697,195	+				-0.3
1,697,195	+				-0.3
1,697,195	+				+0.6
1,697,196	-				-0.7
1,697,196	-				-0.7
1,697,205	+				+0.6
1,697,205	+				-0.6
1,697,206	-				-0.2
1,697,206	-				-0.9
1,697,206	-				-0.2
1,697,207	+				-0.2
1,697,207	+				+0.2
1,697,207	+				+0.1
1,697,207	+				+1.2
1,697,208	-				-0.2
1,697,208	-				-0.5
1,697,208	-				-0.5
1,697,208	-				-1.5
1,697,208	-				-0.8
1,697,208	-				-0.6
1,697,208	-				-1.0
1,697,251	+				+0.8
1,697,276	-				-0.5
1,697,276	-				+0.3
1,697,276	-				+1.8
1,697,308	+				+0.8
1,697,309	-				-0.5
1,697,309	-				+0.8
1,697,355	+				-1.6
1,697,356	-				-1.1
1,697,387	+				+0.8
1,697,388	-				+0.2
1,697,399	+				+1.2
1,697,435	+				+0.4
1,697,435	+				-0.6
1,697,435	+				+1.6
1,697,436	-				+0.8
1,697,440	-				-0.4
1,697,466	+				+0.2
1,697,467	-				+0.3
1,697,467	-				+1.0
1,697,467	-				+0.1
1,697,469	+				+0.6
1,697,469	+				+0.1
1,697,469	+				+0.8
1,697,469	+				-0.3
1,697,469	+				+0.3
1,697,469	+				+1.3
1,697,469	+				-0.2
1,697,469	+				+0.5
1,697,469	+				-0.8
1,697,469	+				+0.2
1,697,470	-				-0.8
1,697,470	-				-0.2
1,697,470	-				+0.3
1,697,470	-				+0.7
1,697,470	-				+0.7
1,697,470	-				-1.1
1,697,470	-				-0.2
1,697,470	-				+0.0
1,697,518	+				-0.7
1,697,518	+				-1.3
1,697,518	+				+0.1
1,697,519	-				+0.5
1,697,550	+				-0.0
1,697,550	+				-0.4
1,697,551	-				-0.6
1,697,584	+				+0.1
1,697,585	-				-0.8
1,697,585	-				-1.3
1,697,585	-				-1.3
1,697,636	+		IAI47_08035	0.12	-0.4
1,697,636	+		IAI47_08035	0.12	+0.8
1,697,725	-		IAI47_08035	0.40	+0.9
1,697,745	+		IAI47_08035	0.47	-0.4
1,697,893	-				+0.1
1,697,893	-				-0.4
1,697,916	+				-0.5
1,697,916	+				-0.9
1,697,940	+				-2.2
1,697,968	+				-0.2
1,697,968	+				+0.6
1,697,968	+				-1.0
1,697,968	+				+0.6
1,697,968	+				-0.8
1,697,968	+				-0.3
1,697,969	-				+0.8
1,697,969	-				+3.0
1,697,969	-				+0.0
1,697,969	-				+1.8
1,697,969	-				-0.5
1,697,972	+				+0.3
1,697,972	+				-0.2
1,697,972	+				+1.1
1,697,972	+				+0.4
1,697,973	-				-0.2
1,697,973	-				+0.8
1,698,008	+				+0.0
1,698,008	+				+0.6
1,698,009	-				-1.2
1,698,009	-				+0.4
1,698,068	+				+0.1
1,698,069	-				-2.2
1,698,112	+		IAI47_08040	0.25	-0.0
1,698,112	+		IAI47_08040	0.25	-0.0
1,698,113	-		IAI47_08040	0.25	-0.0
1,698,113	-		IAI47_08040	0.25	-1.7
1,698,217	+		IAI47_08040	0.69	+0.6
1,698,223	-		IAI47_08040	0.72	-1.2
1,698,223	-		IAI47_08040	0.72	-0.2
1,698,250	+		IAI47_08040	0.83	+1.8
1,698,287	+				+0.5
1,698,287	+				-1.3
1,698,288	-				+0.1
1,698,288	-				-1.2
1,698,288	-				-1.2
1,698,318	+				+0.6
1,698,318	+				+0.2
1,698,319	-				+0.4
1,698,319	-				+0.1
1,698,320	+				+0.1
1,698,320	+				+0.2
1,698,320	+				-0.4
1,698,321	-				+0.3
1,698,321	-				+0.6
1,698,321	-				+1.1
1,698,321	-				+1.6