Strain Fitness in Pantoea sp. MT58 around IAI47_06725

Experiment: Ying_AminoAcid20 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 1
1,399,977	-		IAI47_06715	0.88	-0.5
1,399,977	-		IAI47_06715	0.88	-0.7
1,399,977	-		IAI47_06715	0.88	+0.2
1,400,031	+				+0.4
1,400,031	+				-0.4
1,400,031	+				-1.7
1,400,032	-				+0.0
1,400,032	-				-0.7
1,400,032	-				-2.3
1,400,032	-				+1.0
1,400,172	+				+0.1
1,400,172	+				+0.4
1,400,172	+				-0.2
1,400,184	+				-0.4
1,400,897	+				+0.5
1,400,897	+				+0.6
1,400,897	+				+0.0
1,400,897	+				-0.2
1,400,898	-				-0.4
1,400,920	+				+2.4
1,400,921	-				+2.0
1,400,921	-				+0.2
1,400,961	+				+0.8
1,401,017	+				+1.7
1,401,017	+				+0.3
1,401,018	-				+0.2
1,401,018	-				-0.2
1,401,018	-				+0.1
1,401,018	-				-1.2
1,401,049	-				+0.1
1,401,053	+				+0.7
1,401,053	+				+0.5
1,401,053	+				+0.1
1,401,053	+				-1.1
1,401,054	-				+0.8
1,401,072	-		IAI47_06725	0.10	+1.3
1,401,241	+		IAI47_06725	0.25	-0.2
1,401,242	-		IAI47_06725	0.25	-0.9
1,401,282	+		IAI47_06725	0.28	+1.1
1,401,282	+		IAI47_06725	0.28	-0.6
1,401,283	-		IAI47_06725	0.29	+0.8
1,401,351	-		IAI47_06725	0.34	+1.1
1,401,366	+		IAI47_06725	0.36	+0.3
1,401,425	+		IAI47_06725	0.41	-0.4
1,401,425	+		IAI47_06725	0.41	-0.1
1,401,426	-		IAI47_06725	0.41	-2.9
1,401,426	-		IAI47_06725	0.41	-0.0
1,401,459	+		IAI47_06725	0.44	+0.8
1,401,459	+		IAI47_06725	0.44	+1.2
1,401,459	+		IAI47_06725	0.44	+1.0
1,401,460	-		IAI47_06725	0.44	-0.3
1,401,499	+		IAI47_06725	0.47	-2.0
1,401,552	+		IAI47_06725	0.52	-1.4
1,401,553	-		IAI47_06725	0.52	-0.2
1,401,639	+		IAI47_06725	0.59	+0.0
1,401,640	-		IAI47_06725	0.59	+0.6
1,401,640	-		IAI47_06725	0.59	+1.4
1,401,665	-		IAI47_06725	0.61	-0.9
1,401,715	+		IAI47_06725	0.66	+0.1
1,401,715	+		IAI47_06725	0.66	-0.4
1,401,716	-		IAI47_06725	0.66	-0.4
1,401,782	+		IAI47_06725	0.71	+0.8
1,401,782	+		IAI47_06725	0.71	-0.6
1,401,782	+		IAI47_06725	0.71	-0.5
1,401,782	+		IAI47_06725	0.71	-0.3
1,401,782	+		IAI47_06725	0.71	-0.0
1,401,783	-		IAI47_06725	0.72	+0.6
1,401,813	+		IAI47_06725	0.74	-0.2
1,401,814	-		IAI47_06725	0.74	+0.2
1,401,846	+		IAI47_06725	0.77	+0.2
1,401,846	+		IAI47_06725	0.77	-1.0
1,401,847	-		IAI47_06725	0.77	-1.5
1,401,847	-		IAI47_06725	0.77	-1.7
1,401,885	+		IAI47_06725	0.80	-0.4
1,401,885	+		IAI47_06725	0.80	+1.1
1,401,885	+		IAI47_06725	0.80	+0.1
1,401,885	+		IAI47_06725	0.80	-0.5
1,401,885	+		IAI47_06725	0.80	+0.2
1,401,885	+		IAI47_06725	0.80	-1.0
1,401,886	-		IAI47_06725	0.80	+0.8
1,401,886	-		IAI47_06725	0.80	+0.8
1,401,886	-		IAI47_06725	0.80	+0.3
1,401,911	+		IAI47_06725	0.83	-1.3
1,401,911	+		IAI47_06725	0.83	-0.3
1,401,911	+		IAI47_06725	0.83	+0.8
1,401,911	+		IAI47_06725	0.83	-0.4
1,401,911	+		IAI47_06725	0.83	-0.8
1,401,911	+		IAI47_06725	0.83	-0.7
1,401,911	+		IAI47_06725	0.83	+0.2
1,401,912	-		IAI47_06725	0.83	+0.5
1,401,922	-		IAI47_06725	0.84	+0.0
1,401,936	+		IAI47_06725	0.85	+0.6
1,401,936	+		IAI47_06725	0.85	+1.8
1,401,936	+		IAI47_06725	0.85	+0.5
1,401,936	+		IAI47_06725	0.85	-0.5
1,401,936	+		IAI47_06725	0.85	-0.5
1,401,936	+		IAI47_06725	0.85	+0.3
1,401,937	-		IAI47_06725	0.85	+1.0
1,401,937	-		IAI47_06725	0.85	-0.2
1,401,937	-		IAI47_06725	0.85	+0.3
1,401,937	-		IAI47_06725	0.85	-0.8
1,401,937	-		IAI47_06725	0.85	+0.0
1,401,937	-		IAI47_06725	0.85	-0.2
1,401,937	-		IAI47_06725	0.85	-0.9
1,401,938	+		IAI47_06725	0.85	-0.2
1,401,938	+		IAI47_06725	0.85	+0.6
1,401,938	+		IAI47_06725	0.85	-0.2
1,401,938	+		IAI47_06725	0.85	-0.0
1,401,938	+		IAI47_06725	0.85	+0.6
1,401,939	-		IAI47_06725	0.85	-0.2
1,401,939	-		IAI47_06725	0.85	-0.7
1,401,939	-		IAI47_06725	0.85	+0.8
1,401,939	-		IAI47_06725	0.85	+1.8
1,401,995	+		IAI47_06725	0.90	+1.3
1,401,995	+		IAI47_06725	0.90	-0.7
1,401,995	+		IAI47_06725	0.90	+1.2
1,401,996	-		IAI47_06725	0.90	+0.8
1,402,018	+				-0.3
1,402,018	+				-1.0
1,402,018	+				+0.4
1,402,064	+				+0.6
1,402,110	+				-0.5
1,402,142	+				+0.6
1,402,142	+				-1.4
1,402,204	+				+0.1
1,402,205	-				-0.4
1,402,205	-				+1.7
1,402,263	+				-0.4
1,402,263	+				-0.2
1,402,264	-				+0.1
1,402,264	-				-0.1
1,402,267	+				-0.2
1,402,267	+				-2.5
1,402,267	+				+1.5
1,402,267	+				-0.5
1,402,267	+				+0.3
1,402,268	-				+1.2
1,402,268	-				+0.7
1,402,268	-				+1.6
1,402,268	-				-0.3
1,402,325	-				+0.1
1,402,368	+		IAI47_06730	0.10	+0.3
1,402,368	+		IAI47_06730	0.10	-1.2
1,402,368	+		IAI47_06730	0.10	-1.5
1,402,369	-		IAI47_06730	0.11	-0.4
1,402,400	-		IAI47_06730	0.14	-0.2
1,402,493	-		IAI47_06730	0.22	-0.1
1,402,505	-		IAI47_06730	0.24	-0.9
1,402,536	+		IAI47_06730	0.27	+0.0
1,402,537	-		IAI47_06730	0.27	-0.7
1,402,537	-		IAI47_06730	0.27	-1.6
1,402,537	-		IAI47_06730	0.27	-0.1
1,402,660	+		IAI47_06730	0.39	-0.2
1,402,660	+		IAI47_06730	0.39	-1.0
1,402,661	-		IAI47_06730	0.39	+0.3
1,402,661	-		IAI47_06730	0.39	+0.8
1,402,661	-		IAI47_06730	0.39	-0.7
1,402,671	+		IAI47_06730	0.40	+1.3
1,402,671	+		IAI47_06730	0.40	-0.3
1,402,683	+		IAI47_06730	0.41	-0.3
1,402,683	+		IAI47_06730	0.41	+0.7
1,402,683	+		IAI47_06730	0.41	-0.2
1,402,683	+		IAI47_06730	0.41	+1.0
1,402,683	+		IAI47_06730	0.41	+0.2
1,402,684	-		IAI47_06730	0.41	-0.7
1,402,684	-		IAI47_06730	0.41	-0.1
1,402,684	-		IAI47_06730	0.41	-0.5
1,402,697	-		IAI47_06730	0.42	-2.0
1,402,697	-		IAI47_06730	0.42	+0.6
1,402,773	+		IAI47_06730	0.49	-0.9
1,402,773	+		IAI47_06730	0.49	-1.5
1,402,774	-		IAI47_06730	0.49	+2.2
1,402,900	-		IAI47_06730	0.62	+0.0
1,402,988	+		IAI47_06730	0.70	-0.3
1,402,988	+		IAI47_06730	0.70	+0.8
1,402,989	-		IAI47_06730	0.70	+0.5
1,403,081	-		IAI47_06730	0.79	+0.1
1,403,096	+		IAI47_06730	0.80	+0.3