Strain Fitness in Pantoea sp. MT58 around IAI47_06250

Experiment: Ying_AminoAcid20 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 1
1,270,183	+		IAI47_06240	0.88	-0.3
1,270,183	+		IAI47_06240	0.88	-1.4
1,270,184	-		IAI47_06240	0.88	-0.2
1,270,190	+		IAI47_06240	0.89	+1.1
1,270,190	+		IAI47_06240	0.89	+0.2
1,270,191	-		IAI47_06240	0.89	+0.3
1,270,196	-		IAI47_06240	0.90	-0.5
1,270,206	+				+0.5
1,270,206	+				-0.2
1,270,234	+				+0.8
1,270,292	+				-1.5
1,270,292	+				+0.0
1,270,292	+				-0.2
1,270,345	+				-1.0
1,270,364	-				+0.8
1,270,409	+		IAI47_06245	0.13	-0.2
1,270,651	+		IAI47_06245	0.43	-0.8
1,270,652	-		IAI47_06245	0.43	-0.2
1,270,660	+		IAI47_06245	0.44	-0.2
1,270,661	-		IAI47_06245	0.45	+0.2
1,270,712	-		IAI47_06245	0.51	-1.2
1,270,712	-		IAI47_06245	0.51	+0.8
1,270,712	-		IAI47_06245	0.51	-0.5
1,270,858	+		IAI47_06245	0.69	-0.5
1,270,858	+		IAI47_06245	0.69	-0.6
1,270,859	-		IAI47_06245	0.69	-0.2
1,270,934	+		IAI47_06245	0.78	+0.8
1,270,934	+		IAI47_06245	0.78	+0.4
1,270,935	-		IAI47_06245	0.79	-1.5
1,270,947	+		IAI47_06245	0.80	-0.4
1,271,030	-				+1.1
1,271,047	+				-1.2
1,271,104	+				-0.4
1,271,104	+				-0.3
1,271,104	+				-0.8
1,271,109	+				-0.2
1,271,122	+				-1.6
1,271,123	-				+1.8
1,271,123	-				-0.3
1,271,123	-				+0.6
1,271,165	+				-1.1
1,271,166	-				+0.6
1,271,208	+		IAI47_06250	0.11	-0.1
1,271,208	+		IAI47_06250	0.11	-0.2
1,271,208	+		IAI47_06250	0.11	-0.1
1,271,209	-		IAI47_06250	0.11	-0.3
1,271,214	-		IAI47_06250	0.12	-0.4
1,271,214	-		IAI47_06250	0.12	+1.0
1,271,223	+		IAI47_06250	0.13	-0.9
1,271,223	+		IAI47_06250	0.13	-0.1
1,271,223	+		IAI47_06250	0.13	-0.7
1,271,224	-		IAI47_06250	0.13	+0.2
1,271,228	+		IAI47_06250	0.14	+0.2
1,271,229	-		IAI47_06250	0.14	-0.1
1,271,333	+		IAI47_06250	0.30	+0.4
1,271,333	+		IAI47_06250	0.30	+1.2
1,271,334	-		IAI47_06250	0.30	+1.4
1,271,354	+		IAI47_06250	0.33	-1.2
1,271,354	+		IAI47_06250	0.33	+1.1
1,271,354	+		IAI47_06250	0.33	+0.2
1,271,354	+		IAI47_06250	0.33	-2.2
1,271,354	+		IAI47_06250	0.33	-0.5
1,271,354	+		IAI47_06250	0.33	+1.0
1,271,354	+		IAI47_06250	0.33	-0.6
1,271,354	+		IAI47_06250	0.33	-1.2
1,271,355	-		IAI47_06250	0.33	-0.5
1,271,355	-		IAI47_06250	0.33	-0.2
1,271,355	-		IAI47_06250	0.33	+0.2
1,271,355	-		IAI47_06250	0.33	-1.5
1,271,355	-		IAI47_06250	0.33	+0.8
1,271,355	-		IAI47_06250	0.33	+1.0
1,271,355	-		IAI47_06250	0.33	-0.8
1,271,355	-		IAI47_06250	0.33	-1.1
1,271,368	+		IAI47_06250	0.35	-0.2
1,271,403	+		IAI47_06250	0.40	-1.1
1,271,403	+		IAI47_06250	0.40	+2.4
1,271,403	+		IAI47_06250	0.40	-1.0
1,271,403	+		IAI47_06250	0.40	-0.9
1,271,403	+		IAI47_06250	0.40	-0.4
1,271,496	+		IAI47_06250	0.54	-1.5
1,271,522	+		IAI47_06250	0.58	-0.3
1,271,523	-		IAI47_06250	0.58	+0.2
1,271,585	+		IAI47_06250	0.68	+0.2
1,271,585	+		IAI47_06250	0.68	+0.6
1,271,585	+		IAI47_06250	0.68	+1.6
1,271,585	+		IAI47_06250	0.68	-1.8
1,271,585	+		IAI47_06250	0.68	-0.8
1,271,585	+		IAI47_06250	0.68	-0.0
1,271,585	+		IAI47_06250	0.68	-0.3
1,271,585	+		IAI47_06250	0.68	-0.2
1,271,586	-		IAI47_06250	0.68	-0.6
1,271,586	-		IAI47_06250	0.68	-0.2
1,271,586	-		IAI47_06250	0.68	+0.5
1,271,586	-		IAI47_06250	0.68	-0.9
1,271,586	-		IAI47_06250	0.68	+0.0
1,271,586	-		IAI47_06250	0.68	-0.0
1,271,586	-		IAI47_06250	0.68	+0.2
1,271,586	-		IAI47_06250	0.68	+0.5
1,271,586	-		IAI47_06250	0.68	+1.8
1,271,586	-		IAI47_06250	0.68	-0.2
1,271,586	-		IAI47_06250	0.68	+0.6
1,271,586	-		IAI47_06250	0.68	+1.8
1,271,586	-		IAI47_06250	0.68	-1.1
1,271,632	+		IAI47_06250	0.75	+1.9
1,271,633	-		IAI47_06250	0.75	+0.7
1,271,652	+		IAI47_06250	0.78	+0.2
1,271,661	+		IAI47_06250	0.79	+0.8
1,271,720	+		IAI47_06250	0.88	+0.2
1,271,777	+				-0.9
1,271,777	+				+1.0
1,271,797	-				+1.8
1,271,814	+				-0.3
1,271,855	+				+0.8
1,271,855	+				-2.4
1,271,869	+				-0.2
1,271,869	+				+0.4
1,271,869	+				-3.0