Strain Fitness in Pantoea sp. MT58 around IAI47_08865

Experiment: Ying_AminoAcid20 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 1
1,871,303	-		IAI47_08855	0.67	-1.3
1,871,313	+		IAI47_08855	0.69	+0.2
1,871,314	-		IAI47_08855	0.69	-0.8
1,871,314	-		IAI47_08855	0.69	-1.4
1,871,314	-		IAI47_08855	0.69	-0.1
1,871,318	-		IAI47_08855	0.69	+0.2
1,871,386	-		IAI47_08855	0.79	+1.2
1,871,386	-		IAI47_08855	0.79	+0.0
1,871,386	-		IAI47_08855	0.79	-0.8
1,871,390	-		IAI47_08855	0.80	-0.3
1,871,449	-		IAI47_08855	0.88	-0.6
1,871,449	-		IAI47_08855	0.88	-1.2
1,871,491	+				-0.4
1,871,492	-				+0.2
1,871,505	+				+1.2
1,871,505	+				+0.1
1,871,506	-				-1.7
1,871,506	-				-2.6
1,871,506	-				-1.6
1,871,562	+				-0.6
1,871,568	+				+0.0
1,871,613	-				+1.3
1,871,635	+				+0.7
1,871,635	+				-0.8
1,871,636	-				-1.1
1,871,637	+				-0.1
1,871,637	+				-0.1
1,871,638	-				-2.1
1,871,638	-				+0.7
1,871,638	-				+0.5
1,871,638	-				-0.7
1,871,638	-				+1.1
1,871,641	+				+1.3
1,871,641	+				-0.1
1,871,641	+				-0.6
1,871,641	+				-0.1
1,871,642	-				-0.6
1,871,642	-				+1.3
1,871,642	-				+0.2
1,871,642	-				-0.5
1,871,648	-				-1.6
1,871,648	-				+0.7
1,871,648	-				+0.2
1,871,649	+				-0.4
1,871,706	+				+0.2
1,871,706	+				+1.2
1,871,706	+				+0.3
1,871,707	-				-0.7
1,871,719	+		IAI47_08860	0.10	-0.5
1,871,733	+		IAI47_08860	0.15	+1.2
1,871,733	+		IAI47_08860	0.15	+1.7
1,871,733	+		IAI47_08860	0.15	-0.8
1,871,733	+		IAI47_08860	0.15	-0.5
1,871,734	-		IAI47_08860	0.16	-1.1
1,871,734	-		IAI47_08860	0.16	-0.4
1,871,739	+		IAI47_08860	0.17	+0.7
1,871,739	+		IAI47_08860	0.17	-0.5
1,871,739	+		IAI47_08860	0.17	+1.0
1,871,739	+		IAI47_08860	0.17	+1.2
1,871,740	-		IAI47_08860	0.18	+0.1
1,871,740	-		IAI47_08860	0.18	-0.6
1,871,740	-		IAI47_08860	0.18	-0.6
1,871,740	-		IAI47_08860	0.18	-0.2
1,871,740	-		IAI47_08860	0.18	+0.2
1,871,740	-		IAI47_08860	0.18	+0.7
1,871,821	+		IAI47_08860	0.47	+0.3
1,871,822	-		IAI47_08860	0.47	+0.0
1,871,858	+		IAI47_08860	0.61	+0.9
1,871,859	-		IAI47_08860	0.61	-0.3
1,871,859	-		IAI47_08860	0.61	-1.6
1,871,864	+		IAI47_08860	0.63	-0.6
1,871,865	-		IAI47_08860	0.63	+0.4
1,871,870	+		IAI47_08860	0.65	-0.8
1,871,870	+		IAI47_08860	0.65	+0.5
1,871,870	+		IAI47_08860	0.65	+0.5
1,871,871	-		IAI47_08860	0.65	+0.2
1,871,899	-		IAI47_08860	0.75	-1.8
1,871,944	+				+0.0
1,871,945	-				-1.3
1,871,964	+				-0.3
1,871,985	+				-0.6
1,871,988	-				-0.6
1,872,016	+				-0.8
1,872,017	-				+0.3
1,872,019	+				-0.8
1,872,019	+				+0.3
1,872,019	+				-1.7
1,872,020	-				+0.7
1,872,020	-				+0.7
1,872,055	+				+0.2
1,872,055	+				+1.2
1,872,107	+				+1.7
1,872,113	+				+1.0
1,872,114	-				+0.7
1,872,172	+				-0.1
1,872,183	+				-0.8
1,872,183	+				+1.6
1,872,184	-				-1.1
1,872,186	+				-0.5
1,872,186	+				+0.6
1,872,186	+				+0.2
1,872,186	+				+0.7
1,872,186	+				+0.0
1,872,187	-				+1.7
1,872,261	+				-0.0
1,872,285	+				+0.5
1,872,285	+				+0.7
1,872,285	+				-0.2
1,872,285	+				-0.2
1,872,285	+				-0.5
1,872,286	-				-0.3
1,872,286	-				+0.2
1,872,286	-				-1.3
1,872,286	-				+1.2
1,872,286	-				+0.3
1,872,296	+				+0.3
1,872,297	-				-1.0
1,872,297	-				+0.1
1,872,316	+				-1.4
1,872,317	-				-0.3
1,872,332	+				+0.4
1,872,353	+		IAI47_08865	0.11	-0.3
1,872,353	+		IAI47_08865	0.11	-1.4
1,872,353	+		IAI47_08865	0.11	-1.0
1,872,354	-		IAI47_08865	0.11	-0.8
1,872,357	+		IAI47_08865	0.11	-0.1
1,872,357	+		IAI47_08865	0.11	+1.0
1,872,371	+		IAI47_08865	0.13	+0.3
1,872,414	-		IAI47_08865	0.20	+0.4
1,872,442	+		IAI47_08865	0.24	+0.2
1,872,459	-		IAI47_08865	0.27	+1.1
1,872,459	-		IAI47_08865	0.27	-0.4
1,872,459	-		IAI47_08865	0.27	-1.1
1,872,551	+		IAI47_08865	0.41	-0.4
1,872,773	+		IAI47_08865	0.74	-0.3
1,872,773	+		IAI47_08865	0.74	-0.3
1,872,773	+		IAI47_08865	0.74	-0.2
1,872,773	+		IAI47_08865	0.74	-0.8
1,872,774	-		IAI47_08865	0.75	+1.2
1,872,774	-		IAI47_08865	0.75	+1.4
1,872,782	+		IAI47_08865	0.76	+1.1
1,872,782	+		IAI47_08865	0.76	+1.1
1,872,783	-		IAI47_08865	0.76	-0.3
1,872,816	+		IAI47_08865	0.81	+0.5
1,872,816	+		IAI47_08865	0.81	+0.7
1,872,816	+		IAI47_08865	0.81	+0.4
1,872,816	+		IAI47_08865	0.81	-0.1
1,872,821	+		IAI47_08865	0.82	+1.2
1,872,822	-		IAI47_08865	0.82	+0.6
1,872,822	-		IAI47_08865	0.82	-1.0
1,872,940	-				-0.1
1,872,962	+				-1.1
1,872,963	-				+0.0
1,872,963	-				-0.5
1,872,963	-				+0.7
1,872,969	+				-0.5
1,872,969	+				+0.7
1,872,969	+				-2.3
1,872,970	-				-0.4
1,872,970	-				+0.5
1,872,970	-				-0.6
1,872,970	-				+0.5
1,872,970	-				+0.7
1,872,970	-				-1.3
1,872,970	-				-1.1
1,872,970	-				-0.8
1,872,971	+				-0.2
1,872,971	+				+0.6
1,872,971	+				-0.4
1,872,971	+				-0.1
1,872,971	+				+0.1
1,872,972	-				-1.0
1,872,972	-				-0.8
1,872,972	-				-0.8
1,872,983	+				+0.7
1,872,983	+				-1.3
1,872,984	-				-0.6
1,873,110	+		IAI47_08870	0.23	-1.3
1,873,110	+		IAI47_08870	0.23	-0.5
1,873,136	+		IAI47_08870	0.29	-0.3
1,873,136	+		IAI47_08870	0.29	+0.1
1,873,136	+		IAI47_08870	0.29	+0.5
1,873,137	-		IAI47_08870	0.29	-0.6
1,873,137	-		IAI47_08870	0.29	+0.0
1,873,156	+		IAI47_08870	0.33	+0.7
1,873,157	-		IAI47_08870	0.34	-0.3
1,873,168	+		IAI47_08870	0.36	+0.1
1,873,168	+		IAI47_08870	0.36	+0.7
1,873,171	+		IAI47_08870	0.37	+1.0
1,873,193	+		IAI47_08870	0.42	-2.8
1,873,193	+		IAI47_08870	0.42	-0.6
1,873,193	+		IAI47_08870	0.42	-0.7
1,873,193	+		IAI47_08870	0.42	+1.7
1,873,194	-		IAI47_08870	0.42	-0.5
1,873,194	-		IAI47_08870	0.42	+1.0
1,873,194	-		IAI47_08870	0.42	+1.3
1,873,194	-		IAI47_08870	0.42	-1.1
1,873,258	+		IAI47_08870	0.56	-0.3
1,873,259	-		IAI47_08870	0.56	-1.7
1,873,274	-		IAI47_08870	0.60	+0.5
1,873,274	-		IAI47_08870	0.60	-0.3
1,873,304	-		IAI47_08870	0.66	+0.6
1,873,367	-		IAI47_08870	0.81	-0.1
1,873,374	+		IAI47_08870	0.82	+0.4
1,873,379	+		IAI47_08870	0.83	+0.2
1,873,379	+		IAI47_08870	0.83	+1.3
1,873,379	+		IAI47_08870	0.83	+0.3
1,873,379	+		IAI47_08870	0.83	+0.3
1,873,379	+		IAI47_08870	0.83	+0.9
1,873,379	+		IAI47_08870	0.83	-0.8
1,873,379	+		IAI47_08870	0.83	+0.7
1,873,379	+		IAI47_08870	0.83	-1.0
1,873,379	+		IAI47_08870	0.83	+0.6
1,873,379	+		IAI47_08870	0.83	+1.3
1,873,380	-		IAI47_08870	0.83	+0.4
1,873,380	-		IAI47_08870	0.83	+2.3
1,873,380	-		IAI47_08870	0.83	-0.8
1,873,380	-		IAI47_08870	0.83	+0.2
1,873,381	+		IAI47_08870	0.84	-0.8
1,873,381	+		IAI47_08870	0.84	-0.3
1,873,381	+		IAI47_08870	0.84	+0.5
1,873,381	+		IAI47_08870	0.84	+0.4
1,873,381	+		IAI47_08870	0.84	-1.1
1,873,382	-		IAI47_08870	0.84	-0.7
1,873,382	-		IAI47_08870	0.84	-1.4
1,873,451	+				-0.1
1,873,521	-				-1.5
1,873,521	-				+1.2
1,873,564	-				+1.1
1,873,564	-				-1.3
1,873,564	-				+0.4