Strain Fitness in Pantoea sp. MT58 around IAI47_08250

Experiment: Ying_AminoAcid20 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 1
1,743,974	+				-0.6
1,743,974	+				+1.1
1,743,993	+				+1.2
1,743,993	+				-1.6
1,744,135	-				+0.0
1,744,135	-				-0.4
1,744,135	-				-0.4
1,744,135	-				+1.6
1,744,219	+				+1.2
1,744,219	+				-0.1
1,744,220	-				+0.7
1,744,220	-				+0.6
1,744,220	-				+0.7
1,744,249	-				-1.5
1,744,258	+				+0.7
1,744,258	+				-0.5
1,744,258	+				+0.1
1,744,272	+				-0.6
1,744,272	+				-0.1
1,744,272	+				+1.9
1,744,273	-				-0.3
1,744,273	-				+0.7
1,744,273	-				+0.5
1,744,273	-				-0.4
1,744,273	-				-2.3
1,744,281	+				+0.2
1,744,282	-				-0.8
1,744,295	-				+0.4
1,744,302	-				-0.4
1,744,363	-		IAI47_08245	0.11	-0.6
1,744,376	-		IAI47_08245	0.13	+0.1
1,744,405	+		IAI47_08245	0.19	+0.7
1,744,406	-		IAI47_08245	0.19	+0.5
1,744,406	-		IAI47_08245	0.19	+3.3
1,744,406	-		IAI47_08245	0.19	+0.0
1,744,417	+		IAI47_08245	0.21	-0.4
1,744,417	+		IAI47_08245	0.21	+2.0
1,744,417	+		IAI47_08245	0.21	-0.3
1,744,418	-		IAI47_08245	0.21	+0.3
1,744,418	-		IAI47_08245	0.21	-1.1
1,744,432	+		IAI47_08245	0.24	+1.7
1,744,433	-		IAI47_08245	0.24	+0.4
1,744,587	-		IAI47_08245	0.53	-0.8
1,744,637	-		IAI47_08245	0.62	-1.1
1,744,711	+		IAI47_08245	0.76	-0.1
1,744,711	+		IAI47_08245	0.76	+1.2
1,744,711	+		IAI47_08245	0.76	+2.1
1,744,712	-		IAI47_08245	0.76	-0.1
1,744,721	+		IAI47_08245	0.78	-0.8
1,744,721	+		IAI47_08245	0.78	-0.3
1,744,722	-		IAI47_08245	0.78	-0.0
1,744,722	-		IAI47_08245	0.78	+1.0
1,744,740	-		IAI47_08245	0.81	+0.3
1,744,742	-		IAI47_08245	0.82	-0.3
1,744,742	-		IAI47_08245	0.82	-0.0
1,744,742	-		IAI47_08245	0.82	+1.2
1,744,762	-		IAI47_08245	0.86	+0.9
1,744,778	+		IAI47_08245	0.89	-2.4
1,744,778	+		IAI47_08245	0.89	-1.3
1,744,779	-		IAI47_08245	0.89	+2.2
1,744,779	-		IAI47_08245	0.89	+0.7
1,744,817	+				+0.5
1,744,825	+				-0.4
1,744,826	-				-0.6
1,744,826	-				+2.3
1,744,838	+				-0.6
1,744,838	+				+0.0
1,744,838	+				+0.9
1,744,839	-				-0.4
1,744,839	-				+0.3
1,744,839	-				+0.9
1,744,841	+				-1.0
1,744,841	+				+0.4
1,744,841	+				+0.4
1,744,841	+				+0.5
1,744,841	+				-0.8
1,744,841	+				+0.4
1,744,842	-				-0.4
1,744,842	-				+1.2
1,744,846	+				+0.5
1,744,847	-				+0.9
1,744,847	-				+0.5
1,744,899	+				+0.3
1,744,899	+				-0.3
1,744,899	+				+1.0
1,744,899	+				-0.1
1,744,900	-				+0.7
1,744,900	-				-0.1
1,744,900	-				-0.1
1,744,900	-				-0.8
1,744,941	-				-1.0
1,744,979	-		IAI47_08250	0.14	+0.7
1,744,979	-		IAI47_08250	0.14	-0.1
1,744,979	-		IAI47_08250	0.14	+0.3
1,744,980	+		IAI47_08250	0.14	+0.2
1,744,980	+		IAI47_08250	0.14	-1.2
1,744,980	+		IAI47_08250	0.14	-1.3
1,744,981	-		IAI47_08250	0.15	-0.7
1,744,981	-		IAI47_08250	0.15	-0.1
1,744,981	-		IAI47_08250	0.15	-0.3
1,745,052	+		IAI47_08250	0.27	+2.1
1,745,052	+		IAI47_08250	0.27	-0.1
1,745,052	+		IAI47_08250	0.27	-2.1
1,745,052	+		IAI47_08250	0.27	-0.1
1,745,053	-		IAI47_08250	0.27	+0.2
1,745,053	-		IAI47_08250	0.27	+0.0
1,745,053	-		IAI47_08250	0.27	-0.7
1,745,053	-		IAI47_08250	0.27	-0.7
1,745,053	-		IAI47_08250	0.27	+0.2
1,745,053	-		IAI47_08250	0.27	-0.4
1,745,053	-		IAI47_08250	0.27	+0.9
1,745,053	-		IAI47_08250	0.27	+0.3
1,745,053	-		IAI47_08250	0.27	+0.4
1,745,053	-		IAI47_08250	0.27	-0.2
1,745,053	-		IAI47_08250	0.27	+0.4
1,745,056	+		IAI47_08250	0.28	-0.6
1,745,076	+		IAI47_08250	0.31	+0.6
1,745,077	-		IAI47_08250	0.32	-0.4
1,745,170	+		IAI47_08250	0.48	-0.4
1,745,204	+		IAI47_08250	0.54	-0.4
1,745,205	-		IAI47_08250	0.54	+0.4
1,745,205	-		IAI47_08250	0.54	+0.4
1,745,205	-		IAI47_08250	0.54	+0.2
1,745,373	+		IAI47_08250	0.84	-0.1
1,745,373	+		IAI47_08250	0.84	-0.2
1,745,374	-		IAI47_08250	0.84	+1.5
1,745,374	-		IAI47_08250	0.84	+2.3
1,745,374	-		IAI47_08250	0.84	-1.0
1,745,412	+				+0.0
1,745,413	-				+0.2
1,745,425	+				-0.8
1,745,425	+				-0.8
1,745,426	-				-0.7
1,745,442	+				-1.3
1,745,442	+				-0.5
1,745,442	+				-0.4
1,745,443	-				+0.2
1,745,443	-				+0.9
1,745,469	+				+0.6
1,745,469	+				-0.4
1,745,469	+				+0.3
1,745,470	-				+0.7
1,745,470	-				+0.4
1,745,470	-				+0.2
1,745,470	-				-0.2
1,745,470	-				-1.6
1,745,479	-				+0.7
1,745,483	+				+0.4
1,745,483	+				+0.2
1,745,484	-				+0.4
1,745,495	+				+0.0
1,745,496	-				+0.5
1,745,496	-				+1.5
1,745,501	+				+0.9
1,745,501	+				+0.2
1,745,501	+				+0.7
1,745,501	+				-0.5
1,745,502	-				-0.8
1,745,502	-				-1.3
1,745,502	-				-0.8
1,745,502	-				-0.1
1,745,502	-				+1.2
1,745,517	+				+1.0
1,745,518	-				-0.3
1,745,556	-				+0.3
1,745,581	+				-0.3
1,745,582	-				-0.6
1,745,582	-				+0.6
1,745,582	-				-0.4
1,745,582	-				+0.1
1,745,601	-				-1.7
1,745,611	+				+1.7
1,745,612	-				-0.2
1,745,614	+				+0.7
1,745,614	+				+0.5
1,745,614	+				-2.1
1,745,614	+				+0.3
1,745,615	-				-0.5
1,745,649	+				+1.1
1,745,652	+				+1.1
1,745,652	+				-0.7
1,745,652	+				-0.5
1,745,652	+				-0.8
1,745,652	+				-0.6
1,745,653	-				-1.1
1,745,653	-				+0.2
1,745,653	-				+0.6
1,745,653	-				+1.3
1,745,656	-				-0.6
1,745,666	+				-0.4
1,745,667	-				+0.5
1,745,667	-				-1.5
1,745,667	-				+0.0
1,745,685	+				-0.2
1,745,685	+				+0.1
1,745,710	+				-1.1
1,745,711	-				-0.5
1,745,711	-				+0.2
1,745,711	-				+0.6
1,745,711	-				-0.3
1,745,711	-				+0.1
1,745,766	+				+0.0
1,745,766	+				+0.7
1,745,767	-				+2.1
1,745,841	+				+0.2
1,745,853	-				-0.6
1,745,853	-				-0.8
1,745,909	+		IAI47_08255	0.13	+2.3
1,745,909	+		IAI47_08255	0.13	-0.3
1,745,909	+		IAI47_08255	0.13	-0.4
1,745,910	-		IAI47_08255	0.13	+0.7
1,745,910	-		IAI47_08255	0.13	-0.3
1,745,910	-		IAI47_08255	0.13	-1.6
1,745,918	+		IAI47_08255	0.14	-0.2
1,745,936	+		IAI47_08255	0.15	-0.3
1,745,937	-		IAI47_08255	0.16	-1.1
1,745,937	-		IAI47_08255	0.16	+0.6
1,745,949	-		IAI47_08255	0.17	+0.1
1,746,021	-		IAI47_08255	0.24	-2.8
1,746,021	-		IAI47_08255	0.24	-0.6
1,746,031	+		IAI47_08255	0.24	+0.6
1,746,048	+		IAI47_08255	0.26	+0.7
1,746,049	-		IAI47_08255	0.26	-0.7
1,746,057	-		IAI47_08255	0.27	+0.1
1,746,057	-		IAI47_08255	0.27	+1.6
1,746,152	+		IAI47_08255	0.36	-1.4
1,746,152	+		IAI47_08255	0.36	+0.7
1,746,152	+		IAI47_08255	0.36	-1.3
1,746,152	+		IAI47_08255	0.36	-0.7
1,746,152	+		IAI47_08255	0.36	-0.7
1,746,152	+		IAI47_08255	0.36	-0.3
1,746,152	+		IAI47_08255	0.36	+1.9
1,746,153	-		IAI47_08255	0.36	-1.0
1,746,153	-		IAI47_08255	0.36	-0.6
1,746,153	-		IAI47_08255	0.36	-1.0
1,746,187	+		IAI47_08255	0.39	-0.8
1,746,208	+		IAI47_08255	0.41	-0.0
1,746,208	+		IAI47_08255	0.41	-1.4
1,746,208	+		IAI47_08255	0.41	+1.2
1,746,208	+		IAI47_08255	0.41	+2.9
1,746,209	-		IAI47_08255	0.41	+0.9
1,746,212	+		IAI47_08255	0.42	-1.2
1,746,212	+		IAI47_08255	0.42	+0.7
1,746,212	+		IAI47_08255	0.42	-0.6
1,746,213	-		IAI47_08255	0.42	-1.1
1,746,213	-		IAI47_08255	0.42	-0.3
1,746,213	-		IAI47_08255	0.42	-1.7
1,746,213	-		IAI47_08255	0.42	-0.7
1,746,221	+		IAI47_08255	0.42	+0.3
1,746,221	+		IAI47_08255	0.42	-0.1
1,746,222	-		IAI47_08255	0.42	-0.6
1,746,317	+		IAI47_08255	0.51	+0.0
1,746,317	+		IAI47_08255	0.51	-0.8
1,746,318	-		IAI47_08255	0.52	-1.0
1,746,318	-		IAI47_08255	0.52	-0.3
1,746,320	+		IAI47_08255	0.52	-1.2
1,746,320	+		IAI47_08255	0.52	-1.3
1,746,320	+		IAI47_08255	0.52	+0.5
1,746,321	-		IAI47_08255	0.52	+0.2
1,746,321	-		IAI47_08255	0.52	+0.3
1,746,321	-		IAI47_08255	0.52	-0.0
1,746,331	-		IAI47_08255	0.53	+0.4
1,746,331	-		IAI47_08255	0.53	-0.0
1,746,331	-		IAI47_08255	0.53	-2.4
1,746,348	+		IAI47_08255	0.54	-2.3
1,746,348	+		IAI47_08255	0.54	+0.5
1,746,349	-		IAI47_08255	0.54	+2.1
1,746,349	-		IAI47_08255	0.54	+0.7
1,746,365	+		IAI47_08255	0.56	+1.0
1,746,366	-		IAI47_08255	0.56	-0.7