Strain Fitness in Pantoea sp. MT58 around IAI47_05400

Experiment: Ying_AminoAcid20 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 1
1,141,980	-		IAI47_05390	0.87	+0.3
1,142,044	+				+0.2
1,142,044	+				+0.1
1,142,053	-				+0.7
1,142,053	-				+0.5
1,142,053	-				-0.3
1,142,053	-				-1.0
1,142,087	+				+1.4
1,142,088	-				+0.3
1,142,160	+				+0.2
1,142,160	+				+1.4
1,142,160	+				-0.6
1,142,161	-				-0.1
1,142,168	+				-1.3
1,142,283	+		IAI47_05395	0.22	+1.4
1,142,283	+		IAI47_05395	0.22	-0.3
1,142,284	-		IAI47_05395	0.22	-0.5
1,142,284	-		IAI47_05395	0.22	-0.7
1,142,313	+		IAI47_05395	0.26	+0.9
1,142,325	+		IAI47_05395	0.27	-0.3
1,142,370	+		IAI47_05395	0.32	-0.4
1,142,370	+		IAI47_05395	0.32	+0.7
1,142,449	+		IAI47_05395	0.41	+0.4
1,142,450	-		IAI47_05395	0.41	-0.5
1,142,502	+		IAI47_05395	0.47	-0.2
1,142,502	+		IAI47_05395	0.47	+1.7
1,142,502	+		IAI47_05395	0.47	-0.1
1,142,502	+		IAI47_05395	0.47	+0.1
1,142,502	+		IAI47_05395	0.47	-0.9
1,142,502	+		IAI47_05395	0.47	-0.5
1,142,502	+		IAI47_05395	0.47	-1.2
1,142,503	-		IAI47_05395	0.47	-1.7
1,142,514	+		IAI47_05395	0.49	+1.0
1,142,514	+		IAI47_05395	0.49	-0.3
1,142,514	+		IAI47_05395	0.49	+0.7
1,142,515	+		IAI47_05395	0.49	-0.0
1,142,515	-		IAI47_05395	0.49	+0.4
1,142,515	-		IAI47_05395	0.49	-0.9
1,142,515	-		IAI47_05395	0.49	+0.3
1,142,515	-		IAI47_05395	0.49	-0.7
1,142,515	-		IAI47_05395	0.49	-0.5
1,142,533	-		IAI47_05395	0.51	-1.6
1,142,636	+		IAI47_05395	0.62	-0.4
1,142,637	-		IAI47_05395	0.63	-0.3
1,142,684	+		IAI47_05395	0.68	+1.4
1,142,684	+		IAI47_05395	0.68	+0.1
1,142,684	+		IAI47_05395	0.68	+0.3
1,142,684	+		IAI47_05395	0.68	-0.5
1,142,684	+		IAI47_05395	0.68	-0.0
1,142,684	+		IAI47_05395	0.68	+1.0
1,142,684	+		IAI47_05395	0.68	-0.9
1,142,684	+		IAI47_05395	0.68	+0.1
1,142,684	+		IAI47_05395	0.68	-1.2
1,142,685	-		IAI47_05395	0.68	+0.1
1,142,685	-		IAI47_05395	0.68	-2.4
1,142,685	-		IAI47_05395	0.68	-1.2
1,142,685	-		IAI47_05395	0.68	-0.6
1,142,685	-		IAI47_05395	0.68	+0.9
1,142,685	-		IAI47_05395	0.68	-0.0
1,142,685	-		IAI47_05395	0.68	-1.2
1,142,685	-		IAI47_05395	0.68	+0.7
1,142,701	+		IAI47_05395	0.70	-2.9
1,142,701	+		IAI47_05395	0.70	+0.1
1,142,702	-		IAI47_05395	0.70	+1.7
1,142,785	+		IAI47_05395	0.79	+0.3
1,142,785	+		IAI47_05395	0.79	-2.2
1,142,785	+		IAI47_05395	0.79	-0.7
1,142,785	+		IAI47_05395	0.79	+0.5
1,142,786	-		IAI47_05395	0.80	+2.7
1,142,786	-		IAI47_05395	0.80	+1.4
1,142,786	-		IAI47_05395	0.80	+0.4
1,142,786	-		IAI47_05395	0.80	-1.2
1,142,786	-		IAI47_05395	0.80	+0.4
1,142,786	-		IAI47_05395	0.80	+0.1
1,142,786	-		IAI47_05395	0.80	+1.3
1,142,787	+		IAI47_05395	0.80	+0.1
1,142,787	+		IAI47_05395	0.80	+0.4
1,142,787	+		IAI47_05395	0.80	-0.7
1,142,787	+		IAI47_05395	0.80	-0.3
1,142,787	+		IAI47_05395	0.80	+0.1
1,142,787	+		IAI47_05395	0.80	-0.1
1,142,787	+		IAI47_05395	0.80	-0.2
1,142,787	+		IAI47_05395	0.80	-1.3
1,142,787	+		IAI47_05395	0.80	+0.7
1,142,787	+		IAI47_05395	0.80	+1.2
1,142,787	+		IAI47_05395	0.80	+0.7
1,142,788	-		IAI47_05395	0.80	+0.7
1,142,788	-		IAI47_05395	0.80	+0.7
1,142,788	-		IAI47_05395	0.80	+0.7
1,142,788	-		IAI47_05395	0.80	+0.3
1,142,788	-		IAI47_05395	0.80	+0.7
1,142,788	-		IAI47_05395	0.80	+0.7
1,142,810	+		IAI47_05395	0.82	-0.8
1,142,810	+		IAI47_05395	0.82	+0.4
1,142,811	-		IAI47_05395	0.82	-0.7
1,142,811	-		IAI47_05395	0.82	-0.4
1,142,811	-		IAI47_05395	0.82	-0.2
1,142,824	+		IAI47_05395	0.84	-0.2
1,142,824	+		IAI47_05395	0.84	-0.6
1,142,824	+		IAI47_05395	0.84	+2.4
1,142,824	+		IAI47_05395	0.84	+1.4
1,142,825	-		IAI47_05395	0.84	+0.4
1,142,825	-		IAI47_05395	0.84	-1.3
1,142,825	-		IAI47_05395	0.84	-0.4
1,142,825	-		IAI47_05395	0.84	-0.7
1,142,915	+				+0.1
1,142,968	+				-1.2
1,143,013	+				+2.0
1,143,013	+				-0.9
1,143,013	+				-1.3
1,143,014	-				+0.5
1,143,014	-				-0.1
1,143,014	-				+1.3
1,143,091	+		IAI47_05400	0.13	+0.4
1,143,091	+		IAI47_05400	0.13	-0.0
1,143,092	-		IAI47_05400	0.13	+0.6
1,143,092	-		IAI47_05400	0.13	-1.0
1,143,092	-		IAI47_05400	0.13	+0.2
1,143,092	-		IAI47_05400	0.13	+0.5
1,143,092	-		IAI47_05400	0.13	-0.7
1,143,094	+		IAI47_05400	0.13	-0.8
1,143,095	-		IAI47_05400	0.13	+1.1
1,143,146	+		IAI47_05400	0.18	-0.1
1,143,200	+		IAI47_05400	0.23	-1.1
1,143,201	-		IAI47_05400	0.23	+1.5
1,143,217	+		IAI47_05400	0.24	+1.3
1,143,218	-		IAI47_05400	0.24	+0.3
1,143,218	-		IAI47_05400	0.24	-0.2
1,143,218	-		IAI47_05400	0.24	-1.6
1,143,465	+		IAI47_05400	0.47	-1.3
1,143,466	-		IAI47_05400	0.47	+0.8
1,143,466	-		IAI47_05400	0.47	+0.3
1,143,469	+		IAI47_05400	0.47	+0.1
1,143,469	+		IAI47_05400	0.47	-2.2
1,143,469	+		IAI47_05400	0.47	+0.7
1,143,469	+		IAI47_05400	0.47	+1.7
1,143,469	+		IAI47_05400	0.47	-0.9
1,143,469	+		IAI47_05400	0.47	-0.4
1,143,470	-		IAI47_05400	0.47	-1.1
1,143,470	-		IAI47_05400	0.47	-0.9
1,143,470	-		IAI47_05400	0.47	-0.5
1,143,512	-		IAI47_05400	0.51	+0.6
1,143,512	-		IAI47_05400	0.51	+0.7
1,143,536	+		IAI47_05400	0.53	+0.9
1,143,740	+		IAI47_05400	0.72	+1.4
1,143,740	+		IAI47_05400	0.72	-0.6
1,143,740	+		IAI47_05400	0.72	+0.0
1,143,740	+		IAI47_05400	0.72	+1.0
1,143,742	+		IAI47_05400	0.72	-0.1
1,143,742	+		IAI47_05400	0.72	-1.9
1,143,742	+		IAI47_05400	0.72	-0.2
1,143,743	-		IAI47_05400	0.72	-1.3
1,143,743	-		IAI47_05400	0.72	-0.1
1,143,970	-				+0.1
1,143,970	-				+0.3
1,143,992	+				-0.7
1,143,993	-				+0.1
1,143,994	+				-2.3
1,143,994	+				+0.1
1,143,994	+				-0.2
1,143,994	+				+0.3
1,143,994	+				+1.7
1,143,995	-				+0.1
1,144,044	-				+2.3
1,144,044	-				+0.3
1,144,103	+				-1.0
1,144,103	+				+0.8
1,144,142	-				-0.2
1,144,165	+				-0.6
1,144,165	+				-1.6
1,144,166	-				-0.1
1,144,166	-				+0.9
1,144,166	-				-0.6
1,144,222	+		IAI47_05405	0.11	-0.5
1,144,222	+		IAI47_05405	0.11	-0.2
1,144,225	+		IAI47_05405	0.11	+0.5
1,144,226	-		IAI47_05405	0.12	+0.7
1,144,242	+		IAI47_05405	0.13	+0.5
1,144,376	+		IAI47_05405	0.28	-0.6
1,144,549	+		IAI47_05405	0.48	+0.5
1,144,575	-		IAI47_05405	0.51	+0.1
1,144,668	+		IAI47_05405	0.61	+0.5
1,144,669	-		IAI47_05405	0.62	-0.2
1,144,717	-		IAI47_05405	0.67	-0.1
1,144,769	+		IAI47_05405	0.73	+0.6
1,144,769	+		IAI47_05405	0.73	+0.7
1,144,770	-		IAI47_05405	0.73	-1.9
1,144,770	-		IAI47_05405	0.73	+0.8
1,144,770	-		IAI47_05405	0.73	+1.4
1,144,784	+		IAI47_05405	0.75	+0.5
1,144,784	+		IAI47_05405	0.75	+0.0
1,144,784	+		IAI47_05405	0.75	+0.4
1,144,785	-		IAI47_05405	0.75	-0.9
1,144,785	-		IAI47_05405	0.75	-1.9
1,144,785	-		IAI47_05405	0.75	+0.6
1,144,785	-		IAI47_05405	0.75	-0.4
1,144,785	-		IAI47_05405	0.75	+1.1
1,144,816	+		IAI47_05405	0.78	+0.0
1,144,870	+		IAI47_05405	0.84	-1.0
1,144,871	-		IAI47_05405	0.84	+0.7
1,144,930	+				+0.5
1,144,980	-				-0.5
1,144,997	+				-0.9
1,144,997	+				-1.1
1,144,997	+				+0.7
1,144,997	+				-0.2
1,144,998	-				+0.8
1,144,998	-				+0.7
1,144,998	-				+0.4
1,144,998	-				-1.5
1,145,006	+				+0.3
1,145,007	-				+1.3
1,145,007	-				-1.2