Experiment: Ying_AminoAcid20 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_03230 and IAI47_03235 are separated by 350 nucleotides IAI47_03235 and IAI47_03240 are separated by 6 nucleotides IAI47_03240 and IAI47_03245 are separated by 236 nucleotides
IAI47_03230: IAI47_03230 - TRAP transporter substrate-binding protein, at 669,723 to 670,694
_03230
IAI47_03235: IAI47_03235 - tol-pal system-associated acyl-CoA thioesterase, at 671,045 to 671,767
_03235
IAI47_03240: IAI47_03240 - TonB system transport protein ExbD, at 671,774 to 672,196
_03240
IAI47_03245: IAI47_03245 - MFS transporter, at 672,433 to 673,758
_03245
Position (kb) 671
672 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 670.058 kb on + strand, within IAI47_03230 at 670.058 kb on + strand, within IAI47_03230 at 670.059 kb on - strand, within IAI47_03230 at 670.059 kb on - strand, within IAI47_03230 at 670.059 kb on - strand, within IAI47_03230 at 670.059 kb on - strand, within IAI47_03230 at 670.199 kb on + strand, within IAI47_03230 at 670.200 kb on - strand, within IAI47_03230 at 670.200 kb on - strand, within IAI47_03230 at 670.200 kb on - strand, within IAI47_03230 at 670.200 kb on - strand, within IAI47_03230 at 670.200 kb on - strand, within IAI47_03230 at 670.205 kb on + strand, within IAI47_03230 at 670.205 kb on + strand, within IAI47_03230 at 670.205 kb on + strand, within IAI47_03230 at 670.206 kb on - strand, within IAI47_03230 at 670.301 kb on + strand, within IAI47_03230 at 670.329 kb on + strand, within IAI47_03230 at 670.330 kb on - strand, within IAI47_03230 at 670.330 kb on - strand, within IAI47_03230 at 670.330 kb on - strand, within IAI47_03230 at 670.330 kb on - strand, within IAI47_03230 at 670.349 kb on + strand, within IAI47_03230 at 670.349 kb on + strand, within IAI47_03230 at 670.349 kb on + strand, within IAI47_03230 at 670.349 kb on + strand, within IAI47_03230 at 670.349 kb on + strand, within IAI47_03230 at 670.350 kb on - strand, within IAI47_03230 at 670.350 kb on - strand, within IAI47_03230 at 670.350 kb on - strand, within IAI47_03230 at 670.350 kb on - strand, within IAI47_03230 at 670.350 kb on - strand, within IAI47_03230 at 670.350 kb on - strand, within IAI47_03230 at 670.350 kb on - strand, within IAI47_03230 at 670.350 kb on - strand, within IAI47_03230 at 670.350 kb on - strand, within IAI47_03230 at 670.350 kb on - strand, within IAI47_03230 at 670.378 kb on + strand, within IAI47_03230 at 670.412 kb on + strand, within IAI47_03230 at 670.445 kb on + strand, within IAI47_03230 at 670.445 kb on + strand, within IAI47_03230 at 670.445 kb on + strand, within IAI47_03230 at 670.446 kb on - strand, within IAI47_03230 at 670.511 kb on - strand, within IAI47_03230 at 670.511 kb on - strand, within IAI47_03230 at 670.616 kb on + strand at 670.616 kb on + strand at 670.617 kb on - strand at 670.617 kb on - strand at 670.617 kb on - strand at 670.644 kb on + strand at 670.644 kb on + strand at 670.644 kb on + strand at 670.644 kb on + strand at 670.644 kb on + strand at 670.645 kb on - strand at 670.645 kb on - strand at 670.645 kb on - strand at 670.645 kb on - strand at 670.695 kb on + strand at 670.695 kb on + strand at 670.696 kb on - strand at 670.715 kb on + strand at 670.715 kb on + strand at 670.715 kb on + strand at 670.716 kb on - strand at 670.716 kb on - strand at 670.737 kb on + strand at 670.766 kb on + strand at 670.766 kb on + strand at 670.767 kb on - strand at 670.767 kb on - strand at 670.767 kb on - strand at 670.767 kb on - strand at 670.767 kb on - strand at 670.767 kb on - strand at 670.795 kb on + strand at 670.795 kb on + strand at 670.795 kb on + strand at 670.795 kb on + strand at 670.796 kb on - strand at 670.796 kb on - strand at 670.796 kb on - strand at 670.796 kb on - strand at 670.796 kb on - strand at 670.796 kb on - strand at 670.977 kb on + strand at 670.977 kb on + strand at 670.980 kb on + strand at 670.981 kb on - strand at 671.075 kb on + strand at 671.075 kb on + strand at 671.075 kb on + strand at 671.075 kb on + strand at 671.075 kb on + strand at 671.075 kb on + strand at 671.075 kb on + strand at 671.075 kb on + strand at 671.075 kb on + strand at 671.075 kb on + strand at 671.075 kb on + strand at 671.075 kb on + strand at 671.076 kb on - strand at 671.076 kb on - strand at 671.090 kb on - strand at 671.162 kb on + strand, within IAI47_03235 at 671.162 kb on + strand, within IAI47_03235 at 671.162 kb on + strand, within IAI47_03235 at 671.163 kb on - strand, within IAI47_03235 at 671.163 kb on - strand, within IAI47_03235 at 671.163 kb on - strand, within IAI47_03235 at 671.163 kb on - strand, within IAI47_03235 at 671.163 kb on - strand, within IAI47_03235 at 671.227 kb on + strand, within IAI47_03235 at 671.233 kb on + strand, within IAI47_03235 at 671.233 kb on + strand, within IAI47_03235 at 671.234 kb on - strand, within IAI47_03235 at 671.234 kb on - strand, within IAI47_03235 at 671.234 kb on - strand, within IAI47_03235 at 671.315 kb on + strand, within IAI47_03235 at 671.338 kb on + strand, within IAI47_03235 at 671.338 kb on + strand, within IAI47_03235 at 671.351 kb on - strand, within IAI47_03235 at 671.351 kb on - strand, within IAI47_03235 at 671.455 kb on + strand, within IAI47_03235 at 671.455 kb on + strand, within IAI47_03235 at 671.612 kb on + strand, within IAI47_03235 at 671.613 kb on - strand, within IAI47_03235 at 671.613 kb on - strand, within IAI47_03235 at 671.639 kb on - strand, within IAI47_03235 at 671.642 kb on + strand, within IAI47_03235 at 671.643 kb on - strand, within IAI47_03235 at 671.643 kb on - strand, within IAI47_03235 at 671.643 kb on - strand, within IAI47_03235 at 671.765 kb on + strand at 671.765 kb on + strand at 671.765 kb on + strand at 671.765 kb on + strand at 671.766 kb on - strand at 671.766 kb on - strand at 671.773 kb on + strand at 671.774 kb on - strand at 671.827 kb on + strand, within IAI47_03240 at 671.827 kb on + strand, within IAI47_03240 at 671.842 kb on + strand, within IAI47_03240 at 671.876 kb on - strand, within IAI47_03240 at 671.876 kb on - strand, within IAI47_03240 at 671.966 kb on + strand, within IAI47_03240 at 671.966 kb on + strand, within IAI47_03240 at 671.967 kb on - strand, within IAI47_03240 at 671.967 kb on - strand, within IAI47_03240 at 671.975 kb on - strand, within IAI47_03240 at 671.975 kb on - strand, within IAI47_03240 at 671.975 kb on - strand, within IAI47_03240 at 671.987 kb on - strand, within IAI47_03240 at 671.996 kb on + strand, within IAI47_03240 at 671.997 kb on - strand, within IAI47_03240 at 671.997 kb on - strand, within IAI47_03240 at 672.107 kb on + strand, within IAI47_03240 at 672.133 kb on + strand, within IAI47_03240 at 672.133 kb on + strand, within IAI47_03240 at 672.134 kb on - strand, within IAI47_03240 at 672.152 kb on + strand, within IAI47_03240 at 672.194 kb on + strand at 672.195 kb on - strand at 672.203 kb on - strand at 672.215 kb on + strand at 672.215 kb on + strand at 672.215 kb on + strand at 672.215 kb on + strand at 672.215 kb on + strand at 672.215 kb on + strand at 672.215 kb on + strand at 672.216 kb on - strand at 672.216 kb on - strand at 672.216 kb on - strand at 672.216 kb on - strand at 672.216 kb on - strand at 672.226 kb on + strand at 672.226 kb on + strand at 672.226 kb on + strand at 672.226 kb on + strand at 672.227 kb on - strand at 672.245 kb on + strand at 672.246 kb on - strand at 672.301 kb on + strand at 672.301 kb on + strand at 672.301 kb on + strand at 672.301 kb on + strand at 672.301 kb on + strand at 672.301 kb on + strand at 672.301 kb on + strand at 672.302 kb on - strand at 672.302 kb on - strand at 672.302 kb on - strand at 672.302 kb on - strand at 672.302 kb on - strand at 672.302 kb on - strand at 672.302 kb on - strand at 672.334 kb on + strand at 672.335 kb on - strand at 672.338 kb on + strand at 672.338 kb on + strand at 672.338 kb on + strand at 672.339 kb on - strand at 672.339 kb on - strand at 672.339 kb on - strand at 672.342 kb on + strand at 672.346 kb on + strand at 672.355 kb on - strand at 672.382 kb on + strand at 672.382 kb on + strand at 672.383 kb on - strand at 672.402 kb on + strand at 672.402 kb on + strand at 672.421 kb on + strand at 672.422 kb on - strand at 672.422 kb on - strand at 672.432 kb on + strand at 672.432 kb on + strand at 672.433 kb on - strand at 672.483 kb on + strand at 672.483 kb on + strand at 672.483 kb on + strand at 672.484 kb on - strand at 672.484 kb on - strand at 672.484 kb on - strand at 672.484 kb on - strand at 672.504 kb on + strand at 672.505 kb on - strand at 672.505 kb on - strand at 672.520 kb on + strand at 672.520 kb on + strand at 672.520 kb on + strand at 672.521 kb on - strand at 672.541 kb on + strand at 672.542 kb on - strand at 672.544 kb on + strand at 672.544 kb on + strand at 672.544 kb on + strand at 672.545 kb on - strand at 672.545 kb on - strand at 672.545 kb on - strand at 672.545 kb on - strand at 672.545 kb on - strand at 672.662 kb on + strand, within IAI47_03245 at 672.670 kb on + strand, within IAI47_03245 at 672.670 kb on + strand, within IAI47_03245 at 672.671 kb on - strand, within IAI47_03245 at 672.671 kb on - strand, within IAI47_03245 at 672.671 kb on - strand, within IAI47_03245 at 672.671 kb on - strand, within IAI47_03245 at 672.671 kb on - strand, within IAI47_03245 at 672.671 kb on - strand, within IAI47_03245 at 672.671 kb on - strand, within IAI47_03245 at 672.693 kb on + strand, within IAI47_03245 at 672.694 kb on - strand, within IAI47_03245 at 672.720 kb on - strand, within IAI47_03245 at 672.732 kb on + strand, within IAI47_03245 at 672.733 kb on - strand, within IAI47_03245 at 672.761 kb on - strand, within IAI47_03245 at 672.761 kb on - strand, within IAI47_03245 at 672.761 kb on - strand, within IAI47_03245 at 672.765 kb on + strand, within IAI47_03245 at 672.765 kb on + strand, within IAI47_03245 at 672.765 kb on + strand, within IAI47_03245 at 672.766 kb on - strand, within IAI47_03245 at 672.766 kb on - strand, within IAI47_03245
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 1 remove 670,058 + IAI47_03230 0.34 +0.3 670,058 + IAI47_03230 0.34 +0.7 670,059 - IAI47_03230 0.35 -0.3 670,059 - IAI47_03230 0.35 -0.4 670,059 - IAI47_03230 0.35 -0.2 670,059 - IAI47_03230 0.35 -0.3 670,199 + IAI47_03230 0.49 -1.6 670,200 - IAI47_03230 0.49 -1.0 670,200 - IAI47_03230 0.49 -1.1 670,200 - IAI47_03230 0.49 -1.9 670,200 - IAI47_03230 0.49 -0.3 670,200 - IAI47_03230 0.49 +0.1 670,205 + IAI47_03230 0.50 -0.9 670,205 + IAI47_03230 0.50 -0.3 670,205 + IAI47_03230 0.50 -0.2 670,206 - IAI47_03230 0.50 -0.3 670,301 + IAI47_03230 0.59 -0.8 670,329 + IAI47_03230 0.62 -0.2 670,330 - IAI47_03230 0.62 +0.4 670,330 - IAI47_03230 0.62 -1.3 670,330 - IAI47_03230 0.62 +0.3 670,330 - IAI47_03230 0.62 +0.0 670,349 + IAI47_03230 0.64 -0.3 670,349 + IAI47_03230 0.64 +0.4 670,349 + IAI47_03230 0.64 +0.5 670,349 + IAI47_03230 0.64 -0.3 670,349 + IAI47_03230 0.64 -0.9 670,350 - IAI47_03230 0.65 +0.5 670,350 - IAI47_03230 0.65 -0.1 670,350 - IAI47_03230 0.65 +0.5 670,350 - IAI47_03230 0.65 -0.1 670,350 - IAI47_03230 0.65 -0.9 670,350 - IAI47_03230 0.65 +0.3 670,350 - IAI47_03230 0.65 -0.1 670,350 - IAI47_03230 0.65 -0.7 670,350 - IAI47_03230 0.65 +0.2 670,350 - IAI47_03230 0.65 +0.1 670,378 + IAI47_03230 0.67 +0.1 670,412 + IAI47_03230 0.71 +0.7 670,445 + IAI47_03230 0.74 -1.3 670,445 + IAI47_03230 0.74 +0.3 670,445 + IAI47_03230 0.74 -0.4 670,446 - IAI47_03230 0.74 +0.1 670,511 - IAI47_03230 0.81 -1.4 670,511 - IAI47_03230 0.81 +0.7 670,616 + -0.1 670,616 + -1.1 670,617 - -0.7 670,617 - +0.7 670,617 - +0.7 670,644 + +0.7 670,644 + +0.2 670,644 + +0.3 670,644 + +0.3 670,644 + +1.1 670,645 - -0.3 670,645 - +0.7 670,645 - +0.3 670,645 - -0.3 670,695 + +2.9 670,695 + -0.0 670,696 - +1.2 670,715 + +1.3 670,715 + +0.2 670,715 + -0.1 670,716 - -0.6 670,716 - -0.9 670,737 + +0.1 670,766 + +1.1 670,766 + +1.0 670,767 - +1.7 670,767 - +0.3 670,767 - +1.1 670,767 - +0.2 670,767 - +0.1 670,767 - -1.0 670,795 + +0.3 670,795 + +1.1 670,795 + +0.7 670,795 + -1.1 670,796 - +0.7 670,796 - -0.5 670,796 - +0.1 670,796 - +0.7 670,796 - -2.4 670,796 - +0.7 670,977 + -0.5 670,977 + -0.0 670,980 + +0.5 670,981 - -0.6 671,075 + -0.2 671,075 + +0.9 671,075 + +1.1 671,075 + -0.9 671,075 + -0.0 671,075 + +0.1 671,075 + +2.1 671,075 + -0.2 671,075 + +1.4 671,075 + -0.7 671,075 + +1.4 671,075 + +0.7 671,076 - +1.5 671,076 - -0.4 671,090 - -1.3 671,162 + IAI47_03235 0.16 -0.9 671,162 + IAI47_03235 0.16 +0.7 671,162 + IAI47_03235 0.16 -0.3 671,163 - IAI47_03235 0.16 -0.3 671,163 - IAI47_03235 0.16 +0.1 671,163 - IAI47_03235 0.16 -0.0 671,163 - IAI47_03235 0.16 -0.3 671,163 - IAI47_03235 0.16 -0.3 671,227 + IAI47_03235 0.25 -0.9 671,233 + IAI47_03235 0.26 -0.3 671,233 + IAI47_03235 0.26 +1.1 671,234 - IAI47_03235 0.26 -0.9 671,234 - IAI47_03235 0.26 -0.6 671,234 - IAI47_03235 0.26 -0.3 671,315 + IAI47_03235 0.37 -0.9 671,338 + IAI47_03235 0.41 -0.3 671,338 + IAI47_03235 0.41 +0.7 671,351 - IAI47_03235 0.42 +1.7 671,351 - IAI47_03235 0.42 -0.3 671,455 + IAI47_03235 0.57 +1.1 671,455 + IAI47_03235 0.57 +2.9 671,612 + IAI47_03235 0.78 +0.4 671,613 - IAI47_03235 0.79 -2.3 671,613 - IAI47_03235 0.79 -0.6 671,639 - IAI47_03235 0.82 -0.9 671,642 + IAI47_03235 0.83 +0.7 671,643 - IAI47_03235 0.83 +1.0 671,643 - IAI47_03235 0.83 +1.2 671,643 - IAI47_03235 0.83 -0.9 671,765 + -0.8 671,765 + -0.4 671,765 + +0.4 671,765 + +0.5 671,766 - +0.7 671,766 - -0.0 671,773 + +0.1 671,774 - -1.9 671,827 + IAI47_03240 0.13 -2.3 671,827 + IAI47_03240 0.13 +1.3 671,842 + IAI47_03240 0.16 +0.7 671,876 - IAI47_03240 0.24 +0.5 671,876 - IAI47_03240 0.24 -1.3 671,966 + IAI47_03240 0.45 +0.1 671,966 + IAI47_03240 0.45 -0.6 671,967 - IAI47_03240 0.46 +0.5 671,967 - IAI47_03240 0.46 -0.1 671,975 - IAI47_03240 0.48 +0.1 671,975 - IAI47_03240 0.48 +0.5 671,975 - IAI47_03240 0.48 +0.3 671,987 - IAI47_03240 0.50 -0.9 671,996 + IAI47_03240 0.52 +0.7 671,997 - IAI47_03240 0.53 +0.1 671,997 - IAI47_03240 0.53 -0.2 672,107 + IAI47_03240 0.79 +1.7 672,133 + IAI47_03240 0.85 +1.3 672,133 + IAI47_03240 0.85 +0.7 672,134 - IAI47_03240 0.85 -0.6 672,152 + IAI47_03240 0.89 +1.1 672,194 + -1.3 672,195 - +1.3 672,203 - -1.1 672,215 + -0.6 672,215 + +1.5 672,215 + -0.5 672,215 + +0.4 672,215 + +0.3 672,215 + -0.1 672,215 + -0.0 672,216 - -0.1 672,216 - +0.1 672,216 - +0.7 672,216 - -0.5 672,216 - +0.4 672,226 + +0.7 672,226 + +0.2 672,226 + +0.7 672,226 + -0.6 672,227 - -0.3 672,245 + -1.1 672,246 - -0.6 672,301 + -1.3 672,301 + +1.3 672,301 + +1.0 672,301 + +0.3 672,301 + +1.1 672,301 + -0.4 672,301 + -0.3 672,302 - -1.6 672,302 - -1.1 672,302 - -0.2 672,302 - -0.3 672,302 - +0.4 672,302 - +0.9 672,302 - -1.0 672,334 + -0.0 672,335 - +0.3 672,338 + -0.3 672,338 + +1.3 672,338 + +0.7 672,339 - -0.2 672,339 - +0.7 672,339 - -0.9 672,342 + -0.3 672,346 + +0.1 672,355 - -0.7 672,382 + +0.2 672,382 + +0.3 672,383 - -0.0 672,402 + +1.0 672,402 + +0.7 672,421 + +0.3 672,422 - +1.7 672,422 - +1.5 672,432 + -0.9 672,432 + -0.7 672,433 - +0.3 672,483 + +0.7 672,483 + +1.4 672,483 + -0.1 672,484 - +0.1 672,484 - +0.1 672,484 - -0.2 672,484 - -1.0 672,504 + +0.6 672,505 - +1.7 672,505 - -0.7 672,520 + -0.6 672,520 + +0.6 672,520 + +0.1 672,521 - -1.3 672,541 + +1.3 672,542 - +1.0 672,544 + +0.7 672,544 + +0.6 672,544 + -1.6 672,545 - +0.1 672,545 - +0.5 672,545 - +0.7 672,545 - -0.1 672,545 - +0.2 672,662 + IAI47_03245 0.17 +0.5 672,670 + IAI47_03245 0.18 -0.7 672,670 + IAI47_03245 0.18 +0.5 672,671 - IAI47_03245 0.18 -0.7 672,671 - IAI47_03245 0.18 +0.4 672,671 - IAI47_03245 0.18 +0.3 672,671 - IAI47_03245 0.18 +0.1 672,671 - IAI47_03245 0.18 +0.1 672,671 - IAI47_03245 0.18 +0.1 672,671 - IAI47_03245 0.18 +1.0 672,693 + IAI47_03245 0.20 +0.7 672,694 - IAI47_03245 0.20 -0.1 672,720 - IAI47_03245 0.22 +0.2 672,732 + IAI47_03245 0.23 -0.1 672,733 - IAI47_03245 0.23 +0.8 672,761 - IAI47_03245 0.25 +1.3 672,761 - IAI47_03245 0.25 +0.9 672,761 - IAI47_03245 0.25 +0.9 672,765 + IAI47_03245 0.25 +0.4 672,765 + IAI47_03245 0.25 +0.7 672,765 + IAI47_03245 0.25 +0.0 672,766 - IAI47_03245 0.25 -0.3 672,766 - IAI47_03245 0.25 -0.7
Or see this region's nucleotide sequence