Experiment: Ying_AminoAcid20 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_00590 and IAI47_00595 are separated by 150 nucleotides IAI47_00595 and IAI47_00600 are separated by 49 nucleotides IAI47_00600 and IAI47_00605 are separated by 35 nucleotides IAI47_00605 and IAI47_00610 are separated by 119 nucleotides
IAI47_00590: IAI47_00590 - NupC/NupG family nucleoside CNT transporter, at 130,803 to 131,987
_00590
IAI47_00595: IAI47_00595 - ribonuclease PH, at 132,138 to 132,854
_00595
IAI47_00600: IAI47_00600 - orotate phosphoribosyltransferase, at 132,904 to 133,545
_00600
IAI47_00605: IAI47_00605 - nucleoid occlusion factor SlmA, at 133,581 to 134,177
_00605
IAI47_00610: IAI47_00610 - dUTP diphosphatase, at 134,297 to 134,755
_00610
Position (kb) 132
133
134 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 131.912 kb on + strand at 131.912 kb on + strand at 131.987 kb on + strand at 131.987 kb on + strand at 131.987 kb on + strand at 131.987 kb on + strand at 131.987 kb on + strand at 131.987 kb on + strand at 131.987 kb on + strand at 131.987 kb on + strand at 131.987 kb on + strand at 131.987 kb on + strand at 131.987 kb on + strand at 131.987 kb on + strand at 131.987 kb on + strand at 131.987 kb on + strand at 131.987 kb on + strand at 131.987 kb on + strand at 131.987 kb on + strand at 131.988 kb on - strand at 131.988 kb on - strand at 131.988 kb on - strand at 131.988 kb on - strand at 131.988 kb on - strand at 131.988 kb on - strand at 131.988 kb on - strand at 131.988 kb on - strand at 132.023 kb on + strand at 132.024 kb on - strand at 132.098 kb on + strand at 132.098 kb on + strand at 132.098 kb on + strand at 132.099 kb on - strand at 132.099 kb on - strand at 132.099 kb on - strand at 132.099 kb on - strand at 132.099 kb on - strand at 132.100 kb on + strand at 132.100 kb on + strand at 132.101 kb on - strand at 132.101 kb on - strand at 132.118 kb on + strand at 132.118 kb on + strand at 132.118 kb on + strand at 132.118 kb on + strand at 132.119 kb on - strand at 132.119 kb on - strand at 132.134 kb on - strand at 132.134 kb on - strand at 132.134 kb on - strand at 132.134 kb on - strand at 132.195 kb on + strand at 132.196 kb on - strand at 132.196 kb on - strand at 132.196 kb on - strand at 132.266 kb on - strand, within IAI47_00595 at 132.266 kb on - strand, within IAI47_00595 at 132.291 kb on - strand, within IAI47_00595 at 132.324 kb on + strand, within IAI47_00595 at 132.324 kb on + strand, within IAI47_00595 at 132.325 kb on - strand, within IAI47_00595 at 132.325 kb on - strand, within IAI47_00595 at 132.380 kb on + strand, within IAI47_00595 at 132.396 kb on - strand, within IAI47_00595 at 132.396 kb on - strand, within IAI47_00595 at 132.449 kb on + strand, within IAI47_00595 at 132.450 kb on - strand, within IAI47_00595 at 132.467 kb on + strand, within IAI47_00595 at 132.467 kb on + strand, within IAI47_00595 at 132.468 kb on - strand, within IAI47_00595 at 132.473 kb on + strand, within IAI47_00595 at 132.474 kb on - strand, within IAI47_00595 at 132.474 kb on - strand, within IAI47_00595 at 132.490 kb on + strand, within IAI47_00595 at 132.490 kb on + strand, within IAI47_00595 at 132.490 kb on + strand, within IAI47_00595 at 132.490 kb on + strand, within IAI47_00595 at 132.491 kb on - strand, within IAI47_00595 at 132.588 kb on - strand, within IAI47_00595 at 132.609 kb on - strand, within IAI47_00595 at 132.609 kb on - strand, within IAI47_00595 at 132.609 kb on - strand, within IAI47_00595 at 132.666 kb on + strand, within IAI47_00595 at 132.666 kb on + strand, within IAI47_00595 at 132.666 kb on + strand, within IAI47_00595 at 132.666 kb on + strand, within IAI47_00595 at 132.666 kb on + strand, within IAI47_00595 at 132.666 kb on + strand, within IAI47_00595 at 132.666 kb on + strand, within IAI47_00595 at 132.666 kb on + strand, within IAI47_00595 at 132.667 kb on - strand, within IAI47_00595 at 132.667 kb on - strand, within IAI47_00595 at 132.667 kb on - strand, within IAI47_00595 at 132.667 kb on - strand, within IAI47_00595 at 132.667 kb on - strand, within IAI47_00595 at 132.667 kb on - strand, within IAI47_00595 at 132.667 kb on - strand, within IAI47_00595 at 132.667 kb on - strand, within IAI47_00595 at 132.857 kb on + strand at 132.857 kb on + strand at 132.857 kb on + strand at 132.857 kb on + strand at 132.857 kb on + strand at 132.857 kb on + strand at 132.857 kb on + strand at 132.858 kb on - strand at 132.858 kb on - strand at 132.858 kb on - strand at 132.858 kb on - strand at 132.888 kb on - strand at 132.927 kb on + strand at 132.928 kb on - strand at 132.928 kb on - strand at 132.990 kb on + strand, within IAI47_00600 at 132.991 kb on - strand, within IAI47_00600 at 133.000 kb on + strand, within IAI47_00600 at 133.001 kb on - strand, within IAI47_00600 at 133.009 kb on - strand, within IAI47_00600 at 133.023 kb on + strand, within IAI47_00600 at 133.040 kb on + strand, within IAI47_00600 at 133.060 kb on + strand, within IAI47_00600 at 133.061 kb on - strand, within IAI47_00600 at 133.061 kb on - strand, within IAI47_00600 at 133.117 kb on + strand, within IAI47_00600 at 133.117 kb on + strand, within IAI47_00600 at 133.117 kb on + strand, within IAI47_00600 at 133.117 kb on + strand, within IAI47_00600 at 133.117 kb on + strand, within IAI47_00600 at 133.117 kb on + strand, within IAI47_00600 at 133.117 kb on + strand, within IAI47_00600 at 133.117 kb on + strand, within IAI47_00600 at 133.118 kb on - strand, within IAI47_00600 at 133.118 kb on - strand, within IAI47_00600 at 133.118 kb on - strand, within IAI47_00600 at 133.119 kb on + strand, within IAI47_00600 at 133.119 kb on + strand, within IAI47_00600 at 133.120 kb on - strand, within IAI47_00600 at 133.120 kb on - strand, within IAI47_00600 at 133.137 kb on + strand, within IAI47_00600 at 133.137 kb on + strand, within IAI47_00600 at 133.137 kb on + strand, within IAI47_00600 at 133.137 kb on + strand, within IAI47_00600 at 133.138 kb on - strand, within IAI47_00600 at 133.187 kb on - strand, within IAI47_00600 at 133.187 kb on - strand, within IAI47_00600 at 133.187 kb on - strand, within IAI47_00600 at 133.194 kb on + strand, within IAI47_00600 at 133.194 kb on + strand, within IAI47_00600 at 133.195 kb on - strand, within IAI47_00600 at 133.201 kb on - strand, within IAI47_00600 at 133.238 kb on + strand, within IAI47_00600 at 133.238 kb on + strand, within IAI47_00600 at 133.238 kb on + strand, within IAI47_00600 at 133.238 kb on + strand, within IAI47_00600 at 133.239 kb on - strand, within IAI47_00600 at 133.317 kb on + strand, within IAI47_00600 at 133.317 kb on + strand, within IAI47_00600 at 133.317 kb on + strand, within IAI47_00600 at 133.317 kb on + strand, within IAI47_00600 at 133.318 kb on - strand, within IAI47_00600 at 133.318 kb on - strand, within IAI47_00600 at 133.320 kb on + strand, within IAI47_00600 at 133.424 kb on - strand, within IAI47_00600 at 133.431 kb on + strand, within IAI47_00600 at 133.432 kb on - strand, within IAI47_00600 at 133.432 kb on - strand, within IAI47_00600 at 133.446 kb on + strand, within IAI47_00600 at 133.446 kb on + strand, within IAI47_00600 at 133.446 kb on + strand, within IAI47_00600 at 133.447 kb on - strand, within IAI47_00600 at 133.447 kb on - strand, within IAI47_00600 at 133.449 kb on + strand, within IAI47_00600 at 133.449 kb on + strand, within IAI47_00600 at 133.522 kb on + strand at 133.523 kb on - strand at 133.523 kb on - strand at 133.523 kb on - strand at 133.534 kb on + strand at 133.534 kb on + strand at 133.543 kb on + strand at 133.544 kb on - strand at 133.582 kb on + strand at 133.582 kb on + strand at 133.583 kb on - strand at 133.583 kb on - strand at 133.583 kb on - strand at 133.583 kb on - strand at 133.583 kb on - strand at 133.583 kb on - strand at 133.583 kb on - strand at 133.583 kb on - strand at 133.587 kb on + strand at 133.588 kb on - strand at 133.660 kb on + strand, within IAI47_00605 at 133.660 kb on + strand, within IAI47_00605 at 133.661 kb on - strand, within IAI47_00605 at 133.661 kb on - strand, within IAI47_00605 at 133.661 kb on - strand, within IAI47_00605 at 133.661 kb on - strand, within IAI47_00605 at 133.805 kb on + strand, within IAI47_00605 at 133.805 kb on + strand, within IAI47_00605 at 133.805 kb on + strand, within IAI47_00605 at 133.805 kb on + strand, within IAI47_00605 at 133.806 kb on - strand, within IAI47_00605 at 133.806 kb on - strand, within IAI47_00605 at 133.806 kb on - strand, within IAI47_00605 at 133.806 kb on - strand, within IAI47_00605 at 133.806 kb on - strand, within IAI47_00605 at 133.806 kb on - strand, within IAI47_00605 at 133.854 kb on + strand, within IAI47_00605 at 133.854 kb on + strand, within IAI47_00605 at 133.854 kb on + strand, within IAI47_00605 at 133.855 kb on - strand, within IAI47_00605 at 133.875 kb on - strand, within IAI47_00605 at 133.875 kb on - strand, within IAI47_00605 at 133.875 kb on - strand, within IAI47_00605 at 133.997 kb on + strand, within IAI47_00605 at 133.998 kb on - strand, within IAI47_00605 at 134.032 kb on + strand, within IAI47_00605 at 134.033 kb on - strand, within IAI47_00605 at 134.183 kb on + strand at 134.183 kb on + strand at 134.204 kb on + strand at 134.204 kb on + strand at 134.205 kb on - strand at 134.208 kb on + strand at 134.208 kb on + strand at 134.208 kb on + strand at 134.209 kb on - strand at 134.209 kb on - strand at 134.221 kb on + strand at 134.221 kb on + strand at 134.221 kb on + strand at 134.221 kb on + strand at 134.221 kb on + strand at 134.221 kb on + strand at 134.222 kb on - strand at 134.222 kb on - strand at 134.222 kb on - strand at 134.222 kb on - strand at 134.222 kb on - strand at 134.265 kb on + strand at 134.266 kb on - strand at 134.274 kb on + strand at 134.274 kb on + strand at 134.275 kb on - strand at 134.275 kb on - strand at 134.275 kb on - strand at 134.275 kb on - strand at 134.288 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 1 remove 131,912 + -2.4 131,912 + +0.4 131,987 + -1.0 131,987 + +0.8 131,987 + +1.4 131,987 + +0.3 131,987 + -1.2 131,987 + +0.8 131,987 + -1.8 131,987 + -0.4 131,987 + +1.2 131,987 + -1.0 131,987 + -0.6 131,987 + +1.5 131,987 + -0.6 131,987 + +0.6 131,987 + +0.0 131,987 + +0.4 131,987 + -1.0 131,988 - -0.9 131,988 - -0.2 131,988 - +1.1 131,988 - -0.3 131,988 - -1.3 131,988 - +2.4 131,988 - -0.8 131,988 - -0.5 132,023 + +0.0 132,024 - -0.4 132,098 + +0.8 132,098 + -1.4 132,098 + +0.8 132,099 - +0.5 132,099 - -1.5 132,099 - -0.2 132,099 - +2.4 132,099 - -0.8 132,100 + +0.1 132,100 + +0.8 132,101 - -0.2 132,101 - -1.2 132,118 + +0.1 132,118 + +0.5 132,118 + -1.1 132,118 + -0.2 132,119 - -1.3 132,119 - +0.5 132,134 - -3.0 132,134 - -1.4 132,134 - -2.4 132,134 - -1.8 132,195 + -1.5 132,196 - -0.2 132,196 - -2.7 132,196 - -1.8 132,266 - IAI47_00595 0.18 -2.5 132,266 - IAI47_00595 0.18 -3.3 132,291 - IAI47_00595 0.21 -1.7 132,324 + IAI47_00595 0.26 +0.9 132,324 + IAI47_00595 0.26 -0.2 132,325 - IAI47_00595 0.26 -0.4 132,325 - IAI47_00595 0.26 -0.7 132,380 + IAI47_00595 0.34 +0.2 132,396 - IAI47_00595 0.36 -2.1 132,396 - IAI47_00595 0.36 -2.4 132,449 + IAI47_00595 0.43 -1.8 132,450 - IAI47_00595 0.44 -1.4 132,467 + IAI47_00595 0.46 -0.4 132,467 + IAI47_00595 0.46 -0.8 132,468 - IAI47_00595 0.46 -2.4 132,473 + IAI47_00595 0.47 +0.8 132,474 - IAI47_00595 0.47 -2.2 132,474 - IAI47_00595 0.47 -1.8 132,490 + IAI47_00595 0.49 -0.4 132,490 + IAI47_00595 0.49 -0.5 132,490 + IAI47_00595 0.49 -1.2 132,490 + IAI47_00595 0.49 +0.6 132,491 - IAI47_00595 0.49 +0.8 132,588 - IAI47_00595 0.63 -0.5 132,609 - IAI47_00595 0.66 -2.2 132,609 - IAI47_00595 0.66 -1.8 132,609 - IAI47_00595 0.66 -3.4 132,666 + IAI47_00595 0.74 -0.2 132,666 + IAI47_00595 0.74 -0.2 132,666 + IAI47_00595 0.74 +0.6 132,666 + IAI47_00595 0.74 -0.9 132,666 + IAI47_00595 0.74 -1.3 132,666 + IAI47_00595 0.74 -0.9 132,666 + IAI47_00595 0.74 -1.5 132,666 + IAI47_00595 0.74 -0.4 132,667 - IAI47_00595 0.74 -1.7 132,667 - IAI47_00595 0.74 -2.8 132,667 - IAI47_00595 0.74 -0.4 132,667 - IAI47_00595 0.74 -1.5 132,667 - IAI47_00595 0.74 -1.2 132,667 - IAI47_00595 0.74 -1.1 132,667 - IAI47_00595 0.74 -2.0 132,667 - IAI47_00595 0.74 -2.8 132,857 + -0.1 132,857 + -0.2 132,857 + -0.0 132,857 + +0.1 132,857 + -0.0 132,857 + -0.5 132,857 + -0.2 132,858 - -1.7 132,858 - +0.8 132,858 - -0.9 132,858 - -2.0 132,888 - -1.5 132,927 + -2.9 132,928 - -1.1 132,928 - -0.8 132,990 + IAI47_00600 0.13 -3.8 132,991 - IAI47_00600 0.14 -3.9 133,000 + IAI47_00600 0.15 -2.4 133,001 - IAI47_00600 0.15 -2.2 133,009 - IAI47_00600 0.16 -2.2 133,023 + IAI47_00600 0.19 -3.5 133,040 + IAI47_00600 0.21 -4.3 133,060 + IAI47_00600 0.24 -2.2 133,061 - IAI47_00600 0.24 -1.8 133,061 - IAI47_00600 0.24 -0.8 133,117 + IAI47_00600 0.33 -1.2 133,117 + IAI47_00600 0.33 -4.7 133,117 + IAI47_00600 0.33 -2.1 133,117 + IAI47_00600 0.33 -1.5 133,117 + IAI47_00600 0.33 -2.0 133,117 + IAI47_00600 0.33 -1.5 133,117 + IAI47_00600 0.33 -2.7 133,117 + IAI47_00600 0.33 -2.0 133,118 - IAI47_00600 0.33 -1.2 133,118 - IAI47_00600 0.33 -1.5 133,118 - IAI47_00600 0.33 -2.7 133,119 + IAI47_00600 0.33 -1.8 133,119 + IAI47_00600 0.33 -2.2 133,120 - IAI47_00600 0.34 -0.2 133,120 - IAI47_00600 0.34 -0.8 133,137 + IAI47_00600 0.36 -3.5 133,137 + IAI47_00600 0.36 -2.4 133,137 + IAI47_00600 0.36 -2.7 133,137 + IAI47_00600 0.36 -2.0 133,138 - IAI47_00600 0.36 -1.8 133,187 - IAI47_00600 0.44 -4.2 133,187 - IAI47_00600 0.44 -0.2 133,187 - IAI47_00600 0.44 -3.8 133,194 + IAI47_00600 0.45 -2.7 133,194 + IAI47_00600 0.45 -3.8 133,195 - IAI47_00600 0.45 -1.2 133,201 - IAI47_00600 0.46 -2.5 133,238 + IAI47_00600 0.52 -2.1 133,238 + IAI47_00600 0.52 -1.8 133,238 + IAI47_00600 0.52 -0.2 133,238 + IAI47_00600 0.52 -0.2 133,239 - IAI47_00600 0.52 -1.1 133,317 + IAI47_00600 0.64 -2.2 133,317 + IAI47_00600 0.64 -3.5 133,317 + IAI47_00600 0.64 -3.8 133,317 + IAI47_00600 0.64 -3.0 133,318 - IAI47_00600 0.64 -0.2 133,318 - IAI47_00600 0.64 -2.8 133,320 + IAI47_00600 0.65 -3.4 133,424 - IAI47_00600 0.81 -1.9 133,431 + IAI47_00600 0.82 -1.6 133,432 - IAI47_00600 0.82 -3.7 133,432 - IAI47_00600 0.82 -2.0 133,446 + IAI47_00600 0.84 -1.8 133,446 + IAI47_00600 0.84 -3.0 133,446 + IAI47_00600 0.84 -2.0 133,447 - IAI47_00600 0.85 -4.0 133,447 - IAI47_00600 0.85 -1.0 133,449 + IAI47_00600 0.85 -2.0 133,449 + IAI47_00600 0.85 -2.1 133,522 + -3.2 133,523 - -2.2 133,523 - -2.0 133,523 - -1.1 133,534 + +0.2 133,534 + +0.1 133,543 + +1.0 133,544 - -1.2 133,582 + -0.6 133,582 + -0.2 133,583 - -1.2 133,583 - +0.8 133,583 - +0.6 133,583 - +1.0 133,583 - +0.6 133,583 - -0.2 133,583 - +1.2 133,583 - -1.0 133,587 + -0.2 133,588 - -0.7 133,660 + IAI47_00605 0.13 +1.4 133,660 + IAI47_00605 0.13 -2.1 133,661 - IAI47_00605 0.13 -0.0 133,661 - IAI47_00605 0.13 -0.2 133,661 - IAI47_00605 0.13 -0.2 133,661 - IAI47_00605 0.13 -1.1 133,805 + IAI47_00605 0.38 +1.3 133,805 + IAI47_00605 0.38 +0.2 133,805 + IAI47_00605 0.38 -1.3 133,805 + IAI47_00605 0.38 -0.4 133,806 - IAI47_00605 0.38 +0.8 133,806 - IAI47_00605 0.38 -1.5 133,806 - IAI47_00605 0.38 -1.1 133,806 - IAI47_00605 0.38 +0.3 133,806 - IAI47_00605 0.38 +0.1 133,806 - IAI47_00605 0.38 -2.2 133,854 + IAI47_00605 0.46 -1.6 133,854 + IAI47_00605 0.46 -1.0 133,854 + IAI47_00605 0.46 +0.3 133,855 - IAI47_00605 0.46 -1.0 133,875 - IAI47_00605 0.49 +0.0 133,875 - IAI47_00605 0.49 -0.8 133,875 - IAI47_00605 0.49 +1.4 133,997 + IAI47_00605 0.70 +0.4 133,998 - IAI47_00605 0.70 -0.2 134,032 + IAI47_00605 0.76 -0.4 134,033 - IAI47_00605 0.76 -1.2 134,183 + -0.4 134,183 + +0.3 134,204 + -1.5 134,204 + +0.4 134,205 - +0.3 134,208 + -0.2 134,208 + +0.0 134,208 + -2.0 134,209 - +1.0 134,209 - +0.8 134,221 + +0.0 134,221 + +0.4 134,221 + +1.8 134,221 + +0.2 134,221 + +1.6 134,221 + -0.8 134,222 - -0.8 134,222 - +0.0 134,222 - +0.3 134,222 - +0.6 134,222 - +0.5 134,265 + +0.8 134,266 - -0.7 134,274 + -0.4 134,274 + -0.3 134,275 - -0.3 134,275 - -2.2 134,275 - +1.4 134,275 - -1.1 134,288 + -0.5
Or see this region's nucleotide sequence