Experiment: D-Salicin (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_00011 and MPMX20_00012 are separated by 117 nucleotides MPMX20_00012 and MPMX20_00013 are separated by 51 nucleotides
MPMX20_00011: MPMX20_00011 - D-galactonate dehydratase, at 11,595 to 12,743
_00011
MPMX20_00012: MPMX20_00012 - D-galactonate transporter, at 12,861 to 14,153
_00012
MPMX20_00013: MPMX20_00013 - hypothetical protein, at 14,205 to 15,434
_00013
Position (kb) 12
13
14
15 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 11.861 kb on - strand, within MPMX20_00011 at 11.940 kb on + strand, within MPMX20_00011 at 11.948 kb on - strand, within MPMX20_00011 at 11.948 kb on - strand, within MPMX20_00011 at 11.954 kb on + strand, within MPMX20_00011 at 11.955 kb on - strand, within MPMX20_00011 at 11.963 kb on - strand, within MPMX20_00011 at 11.994 kb on - strand, within MPMX20_00011 at 11.994 kb on - strand, within MPMX20_00011 at 12.019 kb on + strand, within MPMX20_00011 at 12.019 kb on + strand, within MPMX20_00011 at 12.027 kb on - strand, within MPMX20_00011 at 12.027 kb on - strand, within MPMX20_00011 at 12.027 kb on - strand, within MPMX20_00011 at 12.034 kb on + strand, within MPMX20_00011 at 12.034 kb on + strand, within MPMX20_00011 at 12.034 kb on + strand, within MPMX20_00011 at 12.034 kb on + strand, within MPMX20_00011 at 12.042 kb on + strand, within MPMX20_00011 at 12.044 kb on + strand, within MPMX20_00011 at 12.052 kb on - strand, within MPMX20_00011 at 12.104 kb on - strand, within MPMX20_00011 at 12.111 kb on - strand, within MPMX20_00011 at 12.136 kb on + strand, within MPMX20_00011 at 12.220 kb on - strand, within MPMX20_00011 at 12.274 kb on + strand, within MPMX20_00011 at 12.320 kb on + strand, within MPMX20_00011 at 12.320 kb on + strand, within MPMX20_00011 at 12.366 kb on + strand, within MPMX20_00011 at 12.498 kb on + strand, within MPMX20_00011 at 12.525 kb on - strand, within MPMX20_00011 at 12.530 kb on - strand, within MPMX20_00011 at 12.535 kb on - strand, within MPMX20_00011 at 12.535 kb on - strand, within MPMX20_00011 at 12.553 kb on + strand, within MPMX20_00011 at 12.558 kb on + strand, within MPMX20_00011 at 12.664 kb on - strand at 12.694 kb on + strand at 12.694 kb on + strand at 12.694 kb on + strand at 12.695 kb on + strand at 12.702 kb on - strand at 12.702 kb on - strand at 12.727 kb on - strand at 12.729 kb on + strand at 12.737 kb on + strand at 12.790 kb on + strand at 12.812 kb on - strand at 12.889 kb on - strand at 12.904 kb on + strand at 12.904 kb on + strand at 12.904 kb on + strand at 12.904 kb on + strand at 12.904 kb on + strand at 12.904 kb on + strand at 12.912 kb on - strand at 12.912 kb on - strand at 12.912 kb on - strand at 12.912 kb on - strand at 12.912 kb on - strand at 12.912 kb on - strand at 12.912 kb on - strand at 12.912 kb on - strand at 12.941 kb on + strand at 12.946 kb on - strand at 12.956 kb on + strand at 12.963 kb on - strand at 12.969 kb on - strand at 12.969 kb on - strand at 13.046 kb on + strand, within MPMX20_00012 at 13.054 kb on - strand, within MPMX20_00012 at 13.148 kb on + strand, within MPMX20_00012 at 13.223 kb on - strand, within MPMX20_00012 at 13.289 kb on - strand, within MPMX20_00012 at 13.295 kb on - strand, within MPMX20_00012 at 13.297 kb on - strand, within MPMX20_00012 at 13.305 kb on - strand, within MPMX20_00012 at 13.305 kb on - strand, within MPMX20_00012 at 13.348 kb on - strand, within MPMX20_00012 at 13.356 kb on + strand, within MPMX20_00012 at 13.364 kb on - strand, within MPMX20_00012 at 13.364 kb on - strand, within MPMX20_00012 at 13.428 kb on - strand, within MPMX20_00012 at 13.428 kb on - strand, within MPMX20_00012 at 13.502 kb on + strand, within MPMX20_00012 at 13.547 kb on + strand, within MPMX20_00012 at 13.547 kb on + strand, within MPMX20_00012 at 13.547 kb on + strand, within MPMX20_00012 at 13.555 kb on - strand, within MPMX20_00012 at 13.599 kb on - strand, within MPMX20_00012 at 13.607 kb on + strand, within MPMX20_00012 at 13.618 kb on + strand, within MPMX20_00012 at 13.618 kb on + strand, within MPMX20_00012 at 13.618 kb on + strand, within MPMX20_00012 at 13.624 kb on - strand, within MPMX20_00012 at 13.626 kb on - strand, within MPMX20_00012 at 13.626 kb on - strand, within MPMX20_00012 at 13.675 kb on - strand, within MPMX20_00012 at 13.729 kb on + strand, within MPMX20_00012 at 13.735 kb on - strand, within MPMX20_00012 at 13.829 kb on + strand, within MPMX20_00012 at 13.948 kb on + strand, within MPMX20_00012 at 13.974 kb on - strand, within MPMX20_00012 at 13.984 kb on - strand, within MPMX20_00012 at 13.988 kb on + strand, within MPMX20_00012 at 14.017 kb on - strand, within MPMX20_00012 at 14.038 kb on - strand at 14.046 kb on + strand at 14.051 kb on + strand at 14.054 kb on - strand at 14.058 kb on + strand at 14.094 kb on + strand at 14.111 kb on + strand at 14.113 kb on + strand at 14.113 kb on + strand at 14.113 kb on + strand at 14.121 kb on - strand at 14.142 kb on + strand at 14.148 kb on + strand at 14.156 kb on - strand at 14.156 kb on - strand at 14.156 kb on - strand at 14.156 kb on - strand at 14.156 kb on - strand at 14.165 kb on + strand at 14.165 kb on + strand at 14.165 kb on + strand at 14.178 kb on - strand at 14.195 kb on + strand at 14.195 kb on + strand at 14.198 kb on - strand at 14.238 kb on - strand at 14.280 kb on - strand at 14.336 kb on + strand, within MPMX20_00013 at 14.357 kb on + strand, within MPMX20_00013 at 14.423 kb on + strand, within MPMX20_00013 at 14.431 kb on - strand, within MPMX20_00013 at 14.502 kb on + strand, within MPMX20_00013 at 14.503 kb on - strand, within MPMX20_00013 at 14.510 kb on - strand, within MPMX20_00013 at 14.510 kb on - strand, within MPMX20_00013 at 14.510 kb on - strand, within MPMX20_00013 at 14.522 kb on - strand, within MPMX20_00013 at 14.527 kb on + strand, within MPMX20_00013 at 14.535 kb on - strand, within MPMX20_00013 at 14.560 kb on - strand, within MPMX20_00013 at 14.560 kb on - strand, within MPMX20_00013 at 14.623 kb on + strand, within MPMX20_00013 at 14.646 kb on - strand, within MPMX20_00013 at 14.722 kb on + strand, within MPMX20_00013 at 14.750 kb on + strand, within MPMX20_00013 at 14.782 kb on - strand, within MPMX20_00013 at 14.838 kb on + strand, within MPMX20_00013 at 14.926 kb on - strand, within MPMX20_00013 at 14.971 kb on - strand, within MPMX20_00013 at 14.981 kb on - strand, within MPMX20_00013 at 15.022 kb on + strand, within MPMX20_00013 at 15.051 kb on - strand, within MPMX20_00013 at 15.053 kb on + strand, within MPMX20_00013 at 15.086 kb on + strand, within MPMX20_00013 at 15.123 kb on + strand, within MPMX20_00013 at 15.140 kb on + strand, within MPMX20_00013 at 15.140 kb on + strand, within MPMX20_00013 at 15.145 kb on + strand, within MPMX20_00013 at 15.148 kb on - strand, within MPMX20_00013
Per-strain Table
Position Strand Gene LocusTag Fraction D-Salicin (N) remove 11,861 - MPMX20_00011 0.23 +0.6 11,940 + MPMX20_00011 0.30 -1.8 11,948 - MPMX20_00011 0.31 +2.2 11,948 - MPMX20_00011 0.31 +0.6 11,954 + MPMX20_00011 0.31 -3.5 11,955 - MPMX20_00011 0.31 -0.1 11,963 - MPMX20_00011 0.32 +0.1 11,994 - MPMX20_00011 0.35 -3.0 11,994 - MPMX20_00011 0.35 +1.5 12,019 + MPMX20_00011 0.37 -0.9 12,019 + MPMX20_00011 0.37 -0.2 12,027 - MPMX20_00011 0.38 -0.2 12,027 - MPMX20_00011 0.38 -1.6 12,027 - MPMX20_00011 0.38 -0.6 12,034 + MPMX20_00011 0.38 +0.1 12,034 + MPMX20_00011 0.38 -0.3 12,034 + MPMX20_00011 0.38 +1.4 12,034 + MPMX20_00011 0.38 +1.4 12,042 + MPMX20_00011 0.39 -0.4 12,044 + MPMX20_00011 0.39 -0.5 12,052 - MPMX20_00011 0.40 -1.0 12,104 - MPMX20_00011 0.44 -0.6 12,111 - MPMX20_00011 0.45 -0.7 12,136 + MPMX20_00011 0.47 -1.1 12,220 - MPMX20_00011 0.54 -0.9 12,274 + MPMX20_00011 0.59 +1.2 12,320 + MPMX20_00011 0.63 +1.2 12,320 + MPMX20_00011 0.63 +1.8 12,366 + MPMX20_00011 0.67 -0.3 12,498 + MPMX20_00011 0.79 -2.6 12,525 - MPMX20_00011 0.81 -0.6 12,530 - MPMX20_00011 0.81 -0.2 12,535 - MPMX20_00011 0.82 +0.5 12,535 - MPMX20_00011 0.82 -0.4 12,553 + MPMX20_00011 0.83 -0.2 12,558 + MPMX20_00011 0.84 +3.4 12,664 - +0.6 12,694 + +0.3 12,694 + +1.7 12,694 + -0.1 12,695 + -1.0 12,702 - -3.0 12,702 - +0.4 12,727 - -0.1 12,729 + -1.5 12,737 + -2.9 12,790 + -2.9 12,812 - +1.9 12,889 - +0.6 12,904 + +1.4 12,904 + +1.5 12,904 + +1.7 12,904 + -0.8 12,904 + -0.8 12,904 + -4.0 12,912 - -0.9 12,912 - -0.1 12,912 - -1.4 12,912 - +0.4 12,912 - +0.4 12,912 - -0.8 12,912 - -0.6 12,912 - -0.8 12,941 + +1.3 12,946 - -3.0 12,956 + +0.9 12,963 - -2.5 12,969 - +1.3 12,969 - -0.7 13,046 + MPMX20_00012 0.14 +1.6 13,054 - MPMX20_00012 0.15 +1.3 13,148 + MPMX20_00012 0.22 +0.5 13,223 - MPMX20_00012 0.28 -0.0 13,289 - MPMX20_00012 0.33 -0.1 13,295 - MPMX20_00012 0.34 -3.4 13,297 - MPMX20_00012 0.34 -1.1 13,305 - MPMX20_00012 0.34 -1.3 13,305 - MPMX20_00012 0.34 -1.5 13,348 - MPMX20_00012 0.38 -0.0 13,356 + MPMX20_00012 0.38 -2.7 13,364 - MPMX20_00012 0.39 -0.8 13,364 - MPMX20_00012 0.39 -0.8 13,428 - MPMX20_00012 0.44 -0.3 13,428 - MPMX20_00012 0.44 -0.4 13,502 + MPMX20_00012 0.50 -3.2 13,547 + MPMX20_00012 0.53 +1.0 13,547 + MPMX20_00012 0.53 +0.6 13,547 + MPMX20_00012 0.53 +1.1 13,555 - MPMX20_00012 0.54 -1.6 13,599 - MPMX20_00012 0.57 -0.2 13,607 + MPMX20_00012 0.58 -1.9 13,618 + MPMX20_00012 0.59 -4.0 13,618 + MPMX20_00012 0.59 +2.2 13,618 + MPMX20_00012 0.59 +0.1 13,624 - MPMX20_00012 0.59 +1.9 13,626 - MPMX20_00012 0.59 +0.5 13,626 - MPMX20_00012 0.59 -1.3 13,675 - MPMX20_00012 0.63 +2.2 13,729 + MPMX20_00012 0.67 +3.7 13,735 - MPMX20_00012 0.68 -2.5 13,829 + MPMX20_00012 0.75 +0.4 13,948 + MPMX20_00012 0.84 -1.2 13,974 - MPMX20_00012 0.86 +1.4 13,984 - MPMX20_00012 0.87 +0.2 13,988 + MPMX20_00012 0.87 -2.5 14,017 - MPMX20_00012 0.89 -1.0 14,038 - +0.8 14,046 + -3.5 14,051 + -0.0 14,054 - +0.1 14,058 + -0.9 14,094 + +0.2 14,111 + -4.0 14,113 + +0.6 14,113 + -2.9 14,113 + +1.5 14,121 - -3.8 14,142 + -1.2 14,148 + +0.9 14,156 - -3.2 14,156 - -3.5 14,156 - +0.9 14,156 - -2.6 14,156 - +0.5 14,165 + -0.7 14,165 + -1.0 14,165 + -1.1 14,178 - -0.5 14,195 + +1.1 14,195 + +0.5 14,198 - -2.7 14,238 - -0.6 14,280 - -0.4 14,336 + MPMX20_00013 0.11 -3.4 14,357 + MPMX20_00013 0.12 -0.7 14,423 + MPMX20_00013 0.18 -1.0 14,431 - MPMX20_00013 0.18 -0.1 14,502 + MPMX20_00013 0.24 +1.7 14,503 - MPMX20_00013 0.24 +1.4 14,510 - MPMX20_00013 0.25 +1.2 14,510 - MPMX20_00013 0.25 -0.0 14,510 - MPMX20_00013 0.25 -2.4 14,522 - MPMX20_00013 0.26 -0.1 14,527 + MPMX20_00013 0.26 -1.6 14,535 - MPMX20_00013 0.27 -0.3 14,560 - MPMX20_00013 0.29 -0.4 14,560 - MPMX20_00013 0.29 +0.4 14,623 + MPMX20_00013 0.34 -0.3 14,646 - MPMX20_00013 0.36 -0.9 14,722 + MPMX20_00013 0.42 +2.1 14,750 + MPMX20_00013 0.44 -1.7 14,782 - MPMX20_00013 0.47 -0.2 14,838 + MPMX20_00013 0.51 -1.0 14,926 - MPMX20_00013 0.59 +0.6 14,971 - MPMX20_00013 0.62 -0.6 14,981 - MPMX20_00013 0.63 +1.9 15,022 + MPMX20_00013 0.66 -3.3 15,051 - MPMX20_00013 0.69 +1.4 15,053 + MPMX20_00013 0.69 +0.2 15,086 + MPMX20_00013 0.72 +0.1 15,123 + MPMX20_00013 0.75 +1.4 15,140 + MPMX20_00013 0.76 +1.1 15,140 + MPMX20_00013 0.76 -1.2 15,145 + MPMX20_00013 0.76 -1.0 15,148 - MPMX20_00013 0.77 -1.9
Or see this region's nucleotide sequence