Experiment: Ying_sugar7 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_20000 and IAI47_20005 are separated by 48 nucleotides IAI47_20005 and IAI47_20010 are separated by 444 nucleotides IAI47_20010 and IAI47_20015 are separated by 417 nucleotides
IAI47_20000: IAI47_20000 - PTS sugar transporter subunit IIB, at 232,972 to 233,244
_20000
IAI47_20005: IAI47_20005 - PTS sugar transporter subunit IIA, at 233,293 to 233,742
_20005
IAI47_20010: IAI47_20010 - GntR family transcriptional regulator, at 234,187 to 234,921
_20010
IAI47_20015: IAI47_20015 - MsnO8 family LLM class oxidoreductase, at 235,339 to 236,337
_20015
Position (kb) 234
235 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 233.236 kb on - strand at 233.244 kb on + strand at 233.245 kb on - strand at 233.315 kb on - strand at 233.328 kb on + strand at 233.409 kb on + strand, within IAI47_20005 at 233.410 kb on - strand, within IAI47_20005 at 233.410 kb on - strand, within IAI47_20005 at 233.410 kb on - strand, within IAI47_20005 at 233.434 kb on - strand, within IAI47_20005 at 233.434 kb on - strand, within IAI47_20005 at 233.434 kb on - strand, within IAI47_20005 at 233.615 kb on + strand, within IAI47_20005 at 233.615 kb on + strand, within IAI47_20005 at 233.615 kb on + strand, within IAI47_20005 at 233.615 kb on + strand, within IAI47_20005 at 233.616 kb on - strand, within IAI47_20005 at 233.616 kb on - strand, within IAI47_20005 at 233.727 kb on + strand at 233.727 kb on + strand at 233.728 kb on - strand at 233.728 kb on - strand at 233.728 kb on - strand at 233.728 kb on - strand at 233.771 kb on + strand at 233.771 kb on + strand at 233.771 kb on + strand at 233.772 kb on - strand at 233.772 kb on - strand at 233.772 kb on - strand at 233.772 kb on - strand at 233.775 kb on + strand at 233.775 kb on + strand at 233.775 kb on + strand at 233.775 kb on + strand at 233.775 kb on + strand at 233.776 kb on - strand at 233.776 kb on - strand at 233.776 kb on - strand at 233.878 kb on - strand at 233.878 kb on - strand at 233.891 kb on - strand at 233.921 kb on - strand at 233.932 kb on - strand at 233.965 kb on - strand at 233.971 kb on + strand at 233.981 kb on + strand at 233.982 kb on - strand at 234.010 kb on + strand at 234.025 kb on + strand at 234.026 kb on - strand at 234.026 kb on - strand at 234.026 kb on - strand at 234.026 kb on - strand at 234.086 kb on - strand at 234.086 kb on - strand at 234.086 kb on - strand at 234.106 kb on - strand at 234.106 kb on - strand at 234.134 kb on + strand at 234.134 kb on + strand at 234.134 kb on + strand at 234.229 kb on + strand at 234.229 kb on + strand at 234.229 kb on + strand at 234.229 kb on + strand at 234.229 kb on + strand at 234.229 kb on + strand at 234.230 kb on - strand at 234.230 kb on - strand at 234.230 kb on - strand at 234.230 kb on - strand at 234.241 kb on - strand at 234.241 kb on - strand at 234.247 kb on - strand at 234.290 kb on + strand, within IAI47_20010 at 234.291 kb on - strand, within IAI47_20010 at 234.291 kb on - strand, within IAI47_20010 at 234.315 kb on + strand, within IAI47_20010 at 234.316 kb on - strand, within IAI47_20010 at 234.345 kb on + strand, within IAI47_20010 at 234.345 kb on + strand, within IAI47_20010 at 234.345 kb on + strand, within IAI47_20010 at 234.345 kb on + strand, within IAI47_20010 at 234.345 kb on + strand, within IAI47_20010 at 234.345 kb on + strand, within IAI47_20010 at 234.345 kb on + strand, within IAI47_20010 at 234.346 kb on - strand, within IAI47_20010 at 234.346 kb on - strand, within IAI47_20010 at 234.346 kb on - strand at 234.346 kb on - strand, within IAI47_20010 at 234.346 kb on - strand, within IAI47_20010 at 234.353 kb on + strand, within IAI47_20010 at 234.368 kb on + strand, within IAI47_20010 at 234.368 kb on + strand, within IAI47_20010 at 234.368 kb on + strand, within IAI47_20010 at 234.369 kb on - strand, within IAI47_20010 at 234.369 kb on - strand, within IAI47_20010 at 234.371 kb on - strand, within IAI47_20010 at 234.378 kb on - strand, within IAI47_20010 at 234.413 kb on + strand, within IAI47_20010 at 234.413 kb on + strand, within IAI47_20010 at 234.414 kb on - strand, within IAI47_20010 at 234.414 kb on - strand, within IAI47_20010 at 234.417 kb on + strand, within IAI47_20010 at 234.418 kb on - strand, within IAI47_20010 at 234.511 kb on - strand, within IAI47_20010 at 234.627 kb on + strand, within IAI47_20010 at 234.628 kb on - strand, within IAI47_20010 at 234.628 kb on - strand, within IAI47_20010 at 234.676 kb on + strand, within IAI47_20010 at 234.688 kb on + strand, within IAI47_20010 at 234.688 kb on + strand, within IAI47_20010 at 234.688 kb on + strand, within IAI47_20010 at 234.688 kb on + strand, within IAI47_20010 at 234.688 kb on + strand, within IAI47_20010 at 234.688 kb on + strand, within IAI47_20010 at 234.688 kb on + strand, within IAI47_20010 at 234.689 kb on - strand, within IAI47_20010 at 234.689 kb on - strand, within IAI47_20010 at 234.689 kb on - strand, within IAI47_20010 at 234.694 kb on + strand, within IAI47_20010 at 234.694 kb on + strand, within IAI47_20010 at 234.694 kb on + strand, within IAI47_20010 at 234.695 kb on - strand, within IAI47_20010 at 234.695 kb on - strand, within IAI47_20010 at 234.696 kb on + strand, within IAI47_20010 at 234.696 kb on + strand, within IAI47_20010 at 234.697 kb on - strand, within IAI47_20010 at 234.715 kb on - strand, within IAI47_20010 at 234.715 kb on - strand, within IAI47_20010 at 234.765 kb on + strand, within IAI47_20010 at 234.766 kb on - strand, within IAI47_20010 at 234.777 kb on + strand, within IAI47_20010 at 234.777 kb on + strand, within IAI47_20010 at 234.777 kb on + strand, within IAI47_20010 at 234.778 kb on - strand, within IAI47_20010 at 234.778 kb on - strand, within IAI47_20010 at 234.782 kb on + strand, within IAI47_20010 at 234.787 kb on - strand, within IAI47_20010 at 234.787 kb on - strand, within IAI47_20010 at 234.832 kb on + strand, within IAI47_20010 at 234.919 kb on + strand at 234.924 kb on - strand at 234.929 kb on - strand at 234.944 kb on + strand at 234.944 kb on + strand at 234.944 kb on + strand at 234.945 kb on - strand at 234.969 kb on + strand at 234.969 kb on + strand at 234.969 kb on + strand at 234.969 kb on + strand at 234.969 kb on + strand at 234.970 kb on - strand at 234.970 kb on - strand at 234.975 kb on + strand at 234.975 kb on + strand at 234.976 kb on - strand at 234.979 kb on + strand at 234.980 kb on - strand at 235.038 kb on - strand at 235.098 kb on + strand at 235.099 kb on - strand at 235.099 kb on - strand at 235.099 kb on - strand at 235.156 kb on + strand at 235.157 kb on - strand at 235.183 kb on + strand at 235.183 kb on + strand at 235.184 kb on - strand at 235.184 kb on - strand at 235.184 kb on - strand at 235.187 kb on - strand at 235.187 kb on - strand at 235.220 kb on + strand at 235.220 kb on + strand at 235.255 kb on - strand at 235.261 kb on + strand at 235.268 kb on + strand at 235.269 kb on + strand at 235.269 kb on + strand at 235.269 kb on + strand at 235.280 kb on - strand at 235.285 kb on + strand at 235.322 kb on + strand at 235.346 kb on - strand at 235.361 kb on + strand at 235.365 kb on + strand at 235.365 kb on + strand at 235.365 kb on + strand at 235.365 kb on + strand at 235.366 kb on - strand at 235.366 kb on - strand at 235.366 kb on - strand at 235.366 kb on - strand at 235.450 kb on + strand, within IAI47_20015 at 235.450 kb on + strand, within IAI47_20015 at 235.517 kb on + strand, within IAI47_20015 at 235.517 kb on + strand, within IAI47_20015 at 235.518 kb on - strand, within IAI47_20015 at 235.518 kb on - strand, within IAI47_20015 at 235.518 kb on - strand, within IAI47_20015 at 235.518 kb on - strand, within IAI47_20015 at 235.548 kb on + strand, within IAI47_20015 at 235.548 kb on + strand, within IAI47_20015 at 235.585 kb on + strand, within IAI47_20015 at 235.585 kb on + strand, within IAI47_20015 at 235.585 kb on + strand, within IAI47_20015 at 235.586 kb on - strand, within IAI47_20015 at 235.596 kb on + strand, within IAI47_20015 at 235.596 kb on + strand, within IAI47_20015 at 235.596 kb on + strand, within IAI47_20015 at 235.596 kb on + strand, within IAI47_20015 at 235.597 kb on - strand, within IAI47_20015 at 235.597 kb on - strand, within IAI47_20015 at 235.597 kb on - strand, within IAI47_20015 at 235.597 kb on - strand, within IAI47_20015 at 235.597 kb on - strand, within IAI47_20015 at 235.644 kb on + strand, within IAI47_20015 at 235.644 kb on + strand, within IAI47_20015 at 235.659 kb on - strand, within IAI47_20015 at 235.659 kb on - strand, within IAI47_20015 at 235.680 kb on - strand, within IAI47_20015 at 235.741 kb on - strand, within IAI47_20015 at 235.741 kb on - strand, within IAI47_20015 at 235.761 kb on + strand, within IAI47_20015 at 235.762 kb on - strand, within IAI47_20015 at 235.787 kb on - strand, within IAI47_20015 at 235.806 kb on - strand, within IAI47_20015
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 1 remove 233,236 - -0.7 233,244 + -0.5 233,245 - +1.7 233,315 - +0.6 233,328 + -1.1 233,409 + IAI47_20005 0.26 +0.6 233,410 - IAI47_20005 0.26 +0.6 233,410 - IAI47_20005 0.26 -1.3 233,410 - IAI47_20005 0.26 -0.2 233,434 - IAI47_20005 0.31 +0.4 233,434 - IAI47_20005 0.31 +0.4 233,434 - IAI47_20005 0.31 -0.2 233,615 + IAI47_20005 0.72 -0.2 233,615 + IAI47_20005 0.72 -0.1 233,615 + IAI47_20005 0.72 +0.2 233,615 + IAI47_20005 0.72 -0.2 233,616 - IAI47_20005 0.72 +1.2 233,616 - IAI47_20005 0.72 +0.2 233,727 + +1.1 233,727 + +0.9 233,728 - -0.8 233,728 - +0.8 233,728 - +0.1 233,728 - -0.6 233,771 + +0.7 233,771 + +0.8 233,771 + -0.4 233,772 - -1.1 233,772 - +0.1 233,772 - -0.4 233,772 - -0.3 233,775 + -2.4 233,775 + +0.4 233,775 + +0.6 233,775 + -0.8 233,775 + +0.9 233,776 - -0.2 233,776 - -0.3 233,776 - -0.6 233,878 - +0.8 233,878 - -1.0 233,891 - -0.2 233,921 - -0.2 233,932 - -1.4 233,965 - +0.5 233,971 + -1.2 233,981 + -0.4 233,982 - +1.6 234,010 + -0.8 234,025 + -0.8 234,026 - -0.9 234,026 - +0.8 234,026 - -0.2 234,026 - +0.0 234,086 - +1.6 234,086 - +0.2 234,086 - +2.1 234,106 - +0.6 234,106 - -0.1 234,134 + -0.2 234,134 + -0.0 234,134 + +0.0 234,229 + -0.2 234,229 + +1.3 234,229 + -1.5 234,229 + -0.3 234,229 + -0.8 234,229 + +0.6 234,230 - +1.0 234,230 - -1.5 234,230 - +0.8 234,230 - +0.4 234,241 - -0.3 234,241 - +0.8 234,247 - +0.6 234,290 + IAI47_20010 0.14 +0.5 234,291 - IAI47_20010 0.14 +2.0 234,291 - IAI47_20010 0.14 -1.0 234,315 + IAI47_20010 0.17 -0.4 234,316 - IAI47_20010 0.18 -0.9 234,345 + IAI47_20010 0.21 -0.2 234,345 + IAI47_20010 0.21 +0.5 234,345 + IAI47_20010 0.21 -0.0 234,345 + IAI47_20010 0.21 +1.0 234,345 + IAI47_20010 0.21 -1.2 234,345 + IAI47_20010 0.21 +0.8 234,345 + IAI47_20010 0.21 -0.2 234,346 - IAI47_20010 0.22 -1.5 234,346 - IAI47_20010 0.22 +1.1 234,346 - +0.0 234,346 - IAI47_20010 0.22 +0.7 234,346 - IAI47_20010 0.22 -0.3 234,353 + IAI47_20010 0.23 +0.2 234,368 + IAI47_20010 0.25 -0.9 234,368 + IAI47_20010 0.25 +1.6 234,368 + IAI47_20010 0.25 -0.2 234,369 - IAI47_20010 0.25 +0.4 234,369 - IAI47_20010 0.25 -0.8 234,371 - IAI47_20010 0.25 -0.9 234,378 - IAI47_20010 0.26 -0.6 234,413 + IAI47_20010 0.31 -0.2 234,413 + IAI47_20010 0.31 +0.8 234,414 - IAI47_20010 0.31 -1.1 234,414 - IAI47_20010 0.31 -1.1 234,417 + IAI47_20010 0.31 +0.2 234,418 - IAI47_20010 0.31 +0.8 234,511 - IAI47_20010 0.44 +0.6 234,627 + IAI47_20010 0.60 +0.2 234,628 - IAI47_20010 0.60 -2.0 234,628 - IAI47_20010 0.60 +0.6 234,676 + IAI47_20010 0.67 +0.6 234,688 + IAI47_20010 0.68 +0.4 234,688 + IAI47_20010 0.68 +0.1 234,688 + IAI47_20010 0.68 +0.3 234,688 + IAI47_20010 0.68 +0.3 234,688 + IAI47_20010 0.68 +0.2 234,688 + IAI47_20010 0.68 +0.6 234,688 + IAI47_20010 0.68 +0.1 234,689 - IAI47_20010 0.68 +0.6 234,689 - IAI47_20010 0.68 -0.6 234,689 - IAI47_20010 0.68 +0.4 234,694 + IAI47_20010 0.69 +0.8 234,694 + IAI47_20010 0.69 +0.0 234,694 + IAI47_20010 0.69 -1.0 234,695 - IAI47_20010 0.69 -0.2 234,695 - IAI47_20010 0.69 +1.2 234,696 + IAI47_20010 0.69 +1.8 234,696 + IAI47_20010 0.69 -0.6 234,697 - IAI47_20010 0.69 +0.2 234,715 - IAI47_20010 0.72 +0.2 234,715 - IAI47_20010 0.72 +0.2 234,765 + IAI47_20010 0.79 -1.1 234,766 - IAI47_20010 0.79 +2.0 234,777 + IAI47_20010 0.80 +0.9 234,777 + IAI47_20010 0.80 -0.0 234,777 + IAI47_20010 0.80 -0.2 234,778 - IAI47_20010 0.80 +0.0 234,778 - IAI47_20010 0.80 +0.6 234,782 + IAI47_20010 0.81 +0.6 234,787 - IAI47_20010 0.82 +0.5 234,787 - IAI47_20010 0.82 -0.3 234,832 + IAI47_20010 0.88 +0.3 234,919 + -0.3 234,924 - +0.5 234,929 - +0.2 234,944 + -0.8 234,944 + -0.8 234,944 + -0.4 234,945 - +0.6 234,969 + +0.0 234,969 + +0.4 234,969 + +0.8 234,969 + +0.2 234,969 + +0.6 234,970 - -0.8 234,970 - +1.1 234,975 + +0.8 234,975 + -0.1 234,976 - +0.1 234,979 + -0.7 234,980 - -0.0 235,038 - -0.8 235,098 + +0.8 235,099 - -2.3 235,099 - +0.4 235,099 - +0.8 235,156 + +1.0 235,157 - -1.0 235,183 + +0.8 235,183 + +1.6 235,184 - +0.1 235,184 - +0.0 235,184 - +0.7 235,187 - -1.0 235,187 - -0.3 235,220 + +1.1 235,220 + -0.1 235,255 - +0.3 235,261 + +0.6 235,268 + +0.8 235,269 + -1.0 235,269 + -0.2 235,269 + -0.2 235,280 - -1.0 235,285 + -0.7 235,322 + -0.9 235,346 - -1.1 235,361 + +0.2 235,365 + +0.4 235,365 + -2.8 235,365 + +1.0 235,365 + -0.8 235,366 - +0.6 235,366 - +0.8 235,366 - +0.1 235,366 - +0.5 235,450 + IAI47_20015 0.11 +1.4 235,450 + IAI47_20015 0.11 +0.5 235,517 + IAI47_20015 0.18 +1.3 235,517 + IAI47_20015 0.18 +0.4 235,518 - IAI47_20015 0.18 -0.4 235,518 - IAI47_20015 0.18 -0.2 235,518 - IAI47_20015 0.18 -0.4 235,518 - IAI47_20015 0.18 +0.2 235,548 + IAI47_20015 0.21 -0.2 235,548 + IAI47_20015 0.21 +0.2 235,585 + IAI47_20015 0.25 +0.6 235,585 + IAI47_20015 0.25 -0.2 235,585 + IAI47_20015 0.25 -0.9 235,586 - IAI47_20015 0.25 -0.4 235,596 + IAI47_20015 0.26 -0.4 235,596 + IAI47_20015 0.26 +0.8 235,596 + IAI47_20015 0.26 +0.1 235,596 + IAI47_20015 0.26 -0.4 235,597 - IAI47_20015 0.26 -0.4 235,597 - IAI47_20015 0.26 +1.6 235,597 - IAI47_20015 0.26 +1.1 235,597 - IAI47_20015 0.26 +0.2 235,597 - IAI47_20015 0.26 -0.4 235,644 + IAI47_20015 0.31 -0.6 235,644 + IAI47_20015 0.31 +0.3 235,659 - IAI47_20015 0.32 +1.8 235,659 - IAI47_20015 0.32 -0.2 235,680 - IAI47_20015 0.34 -1.5 235,741 - IAI47_20015 0.40 -1.2 235,741 - IAI47_20015 0.40 +0.4 235,761 + IAI47_20015 0.42 -0.8 235,762 - IAI47_20015 0.42 +0.6 235,787 - IAI47_20015 0.45 +1.0 235,806 - IAI47_20015 0.47 -0.4
Or see this region's nucleotide sequence