Strain Fitness in Pantoea sp. MT58 around IAI47_11605

Experiment: Ying_sugar7 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep C; time point 1
2,460,444	-				+0.7
2,460,444	-				+0.1
2,460,490	+				+0.7
2,460,491	-				-1.5
2,460,491	-				+0.1
2,460,491	-				+0.9
2,460,583	+		IAI47_11600	0.14	-1.1
2,460,583	+		IAI47_11600	0.14	-0.3
2,460,584	-		IAI47_11600	0.14	-1.3
2,460,658	-		IAI47_11600	0.23	+0.1
2,460,789	+		IAI47_11600	0.39	+0.7
2,460,790	-		IAI47_11600	0.39	+1.7
2,460,792	+		IAI47_11600	0.39	+0.9
2,460,793	-		IAI47_11600	0.39	+0.3
2,460,971	+		IAI47_11600	0.61	+2.5
2,461,043	+		IAI47_11600	0.70	-0.1
2,461,115	+		IAI47_11600	0.78	-0.0
2,461,115	+		IAI47_11600	0.78	-0.9
2,461,115	+		IAI47_11600	0.78	+1.0
2,461,116	-		IAI47_11600	0.78	-0.3
2,461,116	-		IAI47_11600	0.78	-0.4
2,461,159	+		IAI47_11600	0.84	+1.2
2,461,160	-		IAI47_11600	0.84	+0.7
2,461,160	-		IAI47_11600	0.84	+2.0
2,461,268	-				-0.8
2,461,283	+				-1.4
2,461,283	+				-1.3
2,461,283	+				+1.8
2,461,283	+				-0.5
2,461,283	+				+0.7
2,461,283	+				-0.3
2,461,283	+				+1.7
2,461,284	-				+0.1
2,461,316	+				-0.5
2,461,316	+				+1.1
2,461,317	-				+0.7
2,461,317	-				+0.2
2,461,327	+				+0.5
2,461,327	+				+1.2
2,461,328	-				-1.3
2,461,328	-				+0.2
2,461,583	+		IAI47_11605	0.28	+0.2
2,461,583	+		IAI47_11605	0.28	+2.0
2,461,584	-		IAI47_11605	0.28	-0.9
2,461,584	-		IAI47_11605	0.28	-0.6
2,461,584	-		IAI47_11605	0.28	+0.7
2,461,584	-		IAI47_11605	0.28	+0.4
2,461,697	+		IAI47_11605	0.39	-1.0
2,461,698	-		IAI47_11605	0.39	+0.4
2,461,698	-		IAI47_11605	0.39	-0.2
2,461,698	-		IAI47_11605	0.39	+0.2
2,461,698	-		IAI47_11605	0.39	-0.9
2,461,859	+		IAI47_11605	0.56	+0.1
2,462,046	-		IAI47_11605	0.75	-2.2
2,462,046	-		IAI47_11605	0.75	-0.7
2,462,091	+		IAI47_11605	0.80	+0.2
2,462,147	+		IAI47_11605	0.85	+0.4
2,462,147	+		IAI47_11605	0.85	+0.4
2,462,217	+				-0.4
2,462,217	+				+0.9
2,462,218	-				+0.9
2,462,239	+				+0.1
2,462,239	+				+0.8
2,462,239	+				+0.7
2,462,239	+				+1.4
2,462,239	+				-1.5
2,462,239	+				-0.7
2,462,240	-				-0.1
2,462,240	-				+1.5
2,462,240	-				+0.5
2,462,240	-				-1.5
2,462,277	+				-0.8
2,462,284	+				+0.5
2,462,284	+				-0.6
2,462,400	+		IAI47_11610	0.12	+1.0
2,462,400	+		IAI47_11610	0.12	-0.3
2,462,542	+		IAI47_11610	0.30	-1.3
2,462,543	-		IAI47_11610	0.30	+1.3
2,462,543	-		IAI47_11610	0.30	+0.2
2,462,543	-		IAI47_11610	0.30	+0.5
2,462,543	-		IAI47_11610	0.30	+1.9
2,462,543	-		IAI47_11610	0.30	+0.9
2,462,543	-		IAI47_11610	0.30	+0.3
2,462,543	-		IAI47_11610	0.30	+1.1
2,462,582	+		IAI47_11610	0.35	-0.1
2,462,582	+		IAI47_11610	0.35	-0.9
2,462,625	-		IAI47_11610	0.41	+0.5
2,462,625	-		IAI47_11610	0.41	+0.2
2,462,640	+		IAI47_11610	0.43	+0.0
2,462,641	-		IAI47_11610	0.43	+0.8
2,462,708	+		IAI47_11610	0.51	+0.1
2,462,708	+		IAI47_11610	0.51	+0.1
2,462,708	+		IAI47_11610	0.51	-0.6
2,462,708	+		IAI47_11610	0.51	-0.8
2,462,708	+		IAI47_11610	0.51	-0.3
2,462,708	+		IAI47_11610	0.51	-0.3
2,462,708	+		IAI47_11610	0.51	+0.1
2,462,708	+		IAI47_11610	0.51	+0.5
2,462,709	-		IAI47_11610	0.51	-0.1
2,462,709	-		IAI47_11610	0.51	+1.5
2,462,709	-		IAI47_11610	0.51	+1.2
2,462,709	-		IAI47_11610	0.51	+1.2
2,462,732	+		IAI47_11610	0.54	+2.2
2,462,732	+		IAI47_11610	0.54	+0.7
2,462,732	+		IAI47_11610	0.54	+0.7
2,462,732	+		IAI47_11610	0.54	-0.1
2,462,774	+		IAI47_11610	0.60	+0.4
2,462,775	-		IAI47_11610	0.60	+1.2
2,462,775	-		IAI47_11610	0.60	+0.7
2,462,872	-		IAI47_11610	0.72	+0.8
2,462,876	+		IAI47_11610	0.72	-0.1
2,462,877	-		IAI47_11610	0.73	+0.9
2,462,877	-		IAI47_11610	0.73	+0.2
2,462,877	-		IAI47_11610	0.73	+0.7
2,462,877	-		IAI47_11610	0.73	+1.1
2,462,981	-		IAI47_11610	0.86	+0.9
2,462,981	-		IAI47_11610	0.86	+1.8
2,462,981	-		IAI47_11610	0.86	+1.1
2,462,981	-		IAI47_11610	0.86	+0.7
2,463,081	+				-2.0
2,463,081	+				+0.0
2,463,081	+				-1.5
2,463,082	-				+1.5
2,463,087	+				-2.3
2,463,087	+				+1.9
2,463,087	+				+0.1
2,463,088	-				+1.0
2,463,088	-				-0.3
2,463,125	-				+0.1
2,463,125	-				+0.7
2,463,125	-				+0.1
2,463,145	+				-0.9
2,463,145	+				+0.2
2,463,145	+				-1.1
2,463,146	-				+0.4
2,463,146	-				-0.3
2,463,177	-				-0.3
2,463,269	+				-1.0
2,463,269	+				+0.3
2,463,269	+				-0.1
2,463,269	+				+0.3
2,463,269	+				-1.1
2,463,269	+				+0.1
2,463,269	+				-0.2
2,463,269	+				+0.1
2,463,269	+				+0.7
2,463,269	+				-1.2
2,463,270	-				+0.1
2,463,270	-				-0.5
2,463,270	-				-1.2
2,463,270	-				-0.3
2,463,270	-				+0.1
2,463,270	-				-0.1