Strain Fitness in Pantoea sp. MT58 around IAI47_08890

Experiment: Ying_sugar7 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep C; time point 1
1,876,355	+		IAI47_08885	0.69	+0.5
1,876,356	-		IAI47_08885	0.69	+0.5
1,876,357	+		IAI47_08885	0.69	-0.5
1,876,357	+		IAI47_08885	0.69	-1.0
1,876,357	+		IAI47_08885	0.69	-0.5
1,876,357	+		IAI47_08885	0.69	+1.7
1,876,357	+		IAI47_08885	0.69	+0.1
1,876,357	+		IAI47_08885	0.69	+0.5
1,876,358	-		IAI47_08885	0.69	+0.2
1,876,420	+		IAI47_08885	0.74	+1.3
1,876,421	-		IAI47_08885	0.74	+0.7
1,876,421	-		IAI47_08885	0.74	+0.1
1,876,424	+		IAI47_08885	0.74	-0.6
1,876,424	+		IAI47_08885	0.74	-0.7
1,876,425	-		IAI47_08885	0.74	+0.1
1,876,450	+		IAI47_08885	0.75	+1.0
1,876,450	+		IAI47_08885	0.75	-0.4
1,876,451	-		IAI47_08885	0.76	-0.3
1,876,451	-		IAI47_08885	0.76	+0.4
1,876,451	-		IAI47_08885	0.76	+0.7
1,876,508	-		IAI47_08885	0.79	-1.1
1,876,508	-		IAI47_08885	0.79	-0.4
1,876,508	-		IAI47_08885	0.79	+1.1
1,876,544	-		IAI47_08885	0.82	+1.7
1,876,544	-		IAI47_08885	0.82	+0.1
1,876,544	-		IAI47_08885	0.82	-0.3
1,876,568	+		IAI47_08885	0.83	-0.5
1,876,568	+		IAI47_08885	0.83	+0.2
1,876,568	+		IAI47_08885	0.83	+0.6
1,876,568	+		IAI47_08885	0.83	+0.5
1,876,568	+				-1.6
1,876,568	+		IAI47_08885	0.83	-0.4
1,876,568	+		IAI47_08885	0.83	-0.7
1,876,568	+		IAI47_08885	0.83	-0.3
1,876,568	+		IAI47_08885	0.83	+0.3
1,876,569	-		IAI47_08885	0.83	-0.9
1,876,569	-		IAI47_08885	0.83	-2.9
1,876,569	-		IAI47_08885	0.83	-0.6
1,876,569	-		IAI47_08885	0.83	-0.3
1,876,569	-		IAI47_08885	0.83	-0.3
1,876,569	-		IAI47_08885	0.83	+0.1
1,876,569	-		IAI47_08885	0.83	+0.3
1,876,569	-		IAI47_08885	0.83	+0.2
1,876,569	-		IAI47_08885	0.83	+0.5
1,876,569	-		IAI47_08885	0.83	-0.3
1,876,571	-		IAI47_08885	0.83	+1.0
1,876,571	-		IAI47_08885	0.83	-0.6
1,876,571	-		IAI47_08885	0.83	+0.7
1,876,571	-		IAI47_08885	0.83	-0.7
1,876,618	+		IAI47_08885	0.86	+0.1
1,876,618	+		IAI47_08885	0.86	+0.2
1,876,618	+		IAI47_08885	0.86	+0.4
1,876,618	+		IAI47_08885	0.86	-0.1
1,876,619	-		IAI47_08885	0.86	+1.1
1,876,619	-		IAI47_08885	0.86	-1.9
1,876,619	-		IAI47_08885	0.86	-1.7
1,876,619	-		IAI47_08885	0.86	+1.1
1,876,619	-		IAI47_08885	0.86	+1.6
1,876,645	+		IAI47_08885	0.88	+0.9
1,876,646	-		IAI47_08885	0.88	-0.5
1,876,646	-		IAI47_08885	0.88	+1.7
1,876,697	+				-0.6
1,876,698	-				+1.3
1,876,698	-				+0.7
1,876,698	-				+0.5
1,876,698	-				+1.1
1,876,698	-				-0.2
1,876,709	-				+0.5
1,876,715	+				+0.6
1,876,738	-				-0.5
1,876,738	-				+0.3
1,876,738	-				+0.7
1,876,741	+				-0.5
1,876,741	+				+0.1
1,876,741	+				+0.7
1,876,826	+				-0.5
1,876,826	+				-1.9
1,876,826	+				-0.1
1,876,827	-				+0.9
1,876,883	+				-0.2
1,876,884	-				-0.3
1,876,998	+				+1.4
1,877,044	-				-0.4
1,877,044	-				+0.5
1,877,049	-				+1.1
1,877,060	+				-0.5
1,877,060	+				-0.9
1,877,061	-				+0.5
1,877,142	-				+0.2
1,877,142	-				-0.7
1,877,142	-				+0.4
1,877,170	-				+1.1
1,877,184	-				-0.2
1,877,203	-				+0.1
1,877,246	+				-0.0
1,877,268	-				-0.3
1,877,280	+				-0.7
1,877,281	-				-1.0
1,877,281	-				-0.3
1,877,281	-				+0.4
1,877,291	+				+0.1
1,877,292	-				-1.0
1,877,303	-				-1.4
1,877,303	-				-0.5
1,877,310	+				+0.2
1,877,310	+				-0.9
1,877,310	+				-0.1
1,877,311	-				+0.7
1,877,311	-				+0.2
1,877,311	-				+0.6
1,877,330	+				-1.3
1,877,330	+				+0.5
1,877,330	+				-0.4
1,877,330	+				-0.6
1,877,330	+				-0.9
1,877,330	+				-2.1
1,877,330	+				-0.3
1,877,330	+				+0.5
1,877,330	+				+1.6
1,877,330	+				-1.0
1,877,330	+				+0.7
1,877,330	+				-0.9
1,877,330	+				-0.5
1,877,330	+				-0.3
1,877,330	+				+0.2
1,877,331	-				-1.6
1,877,331	-				-1.7
1,877,331	-				+0.3
1,877,331	-				-0.6
1,877,331	-				+0.9
1,877,331	-				-1.6
1,877,331	-				-0.3
1,877,331	-				-0.3
1,877,331	-				+1.0
1,877,331	-				+0.7
1,877,331	-				-0.4
1,877,331	-				+1.1
1,877,341	+				+0.3
1,877,383	-				-0.6
1,877,383	-				-0.8
1,877,482	-		IAI47_08890	0.12	-2.2
1,877,558	+		IAI47_08890	0.17	-0.6
1,877,612	+		IAI47_08890	0.22	+0.1
1,877,612	+		IAI47_08890	0.22	-0.5
1,877,612	+		IAI47_08890	0.22	+0.1
1,877,613	-		IAI47_08890	0.22	-0.1
1,877,613	-		IAI47_08890	0.22	-0.2
1,877,631	+		IAI47_08890	0.23	+0.4
1,877,632	-		IAI47_08890	0.23	+0.9
1,877,657	-		IAI47_08890	0.25	-0.9
1,877,657	-		IAI47_08890	0.25	-1.3
1,877,670	+		IAI47_08890	0.26	-0.4
1,877,718	+		IAI47_08890	0.30	+2.7
1,877,719	-		IAI47_08890	0.30	-0.4
1,877,719	-		IAI47_08890	0.30	-0.5
1,877,743	+		IAI47_08890	0.32	+0.6
1,877,743	+		IAI47_08890	0.32	-0.5
1,877,743	+		IAI47_08890	0.32	+1.3
1,877,744	-		IAI47_08890	0.32	-0.5
1,877,744	-		IAI47_08890	0.32	+0.0
1,877,744	-		IAI47_08890	0.32	+0.1
1,877,744	-		IAI47_08890	0.32	-0.9
1,877,789	+		IAI47_08890	0.35	-1.6
1,877,789	+		IAI47_08890	0.35	-1.0
1,877,789	+		IAI47_08890	0.35	-0.3
1,877,790	-		IAI47_08890	0.35	-0.1
1,877,790	-		IAI47_08890	0.35	-1.2
1,877,790	-		IAI47_08890	0.35	-0.1
1,877,790	-		IAI47_08890	0.35	-0.5
1,877,820	+		IAI47_08890	0.38	-1.1
1,877,820	+		IAI47_08890	0.38	+0.7
1,877,830	+		IAI47_08890	0.38	+0.7
1,877,831	-		IAI47_08890	0.38	-0.0
1,877,882	+		IAI47_08890	0.42	-0.3
1,877,882	+		IAI47_08890	0.42	+0.3
1,877,883	-		IAI47_08890	0.42	-0.1
1,877,883	-		IAI47_08890	0.42	-1.9
1,877,883	-		IAI47_08890	0.42	-0.0
1,877,883	-		IAI47_08890	0.42	+0.1
1,877,900	-		IAI47_08890	0.44	+0.7
1,877,990	+		IAI47_08890	0.51	+0.3
1,878,029	+		IAI47_08890	0.54	-0.4
1,878,030	-		IAI47_08890	0.54	-0.4
1,878,033	+		IAI47_08890	0.54	-0.9
1,878,034	-		IAI47_08890	0.54	-2.6
1,878,034	-		IAI47_08890	0.54	-0.5
1,878,034	-		IAI47_08890	0.54	-0.1
1,878,034	-		IAI47_08890	0.54	-0.1
1,878,034	-		IAI47_08890	0.54	-0.6
1,878,034	-		IAI47_08890	0.54	-0.1
1,878,034	-		IAI47_08890	0.54	-0.8
1,878,034	-		IAI47_08890	0.54	-0.7
1,878,071	+		IAI47_08890	0.57	+1.1
1,878,071	+		IAI47_08890	0.57	+1.3
1,878,071	+		IAI47_08890	0.57	-0.4
1,878,071	+		IAI47_08890	0.57	-0.3
1,878,072	-		IAI47_08890	0.57	-0.5
1,878,072	-		IAI47_08890	0.57	-1.3
1,878,075	+		IAI47_08890	0.57	+0.3
1,878,075	+		IAI47_08890	0.57	+1.5
1,878,075	+		IAI47_08890	0.57	-1.0
1,878,075	+		IAI47_08890	0.57	-0.0
1,878,075	+		IAI47_08890	0.57	-0.1
1,878,075	+		IAI47_08890	0.57	+0.4
1,878,075	+		IAI47_08890	0.57	+1.0
1,878,075	+		IAI47_08890	0.57	+1.7
1,878,075	+		IAI47_08890	0.57	+0.9
1,878,075	+		IAI47_08890	0.57	-0.5
1,878,075	+		IAI47_08890	0.57	-0.8
1,878,076	-		IAI47_08890	0.57	+0.4
1,878,076	-		IAI47_08890	0.57	+0.5
1,878,076	-		IAI47_08890	0.57	+0.7
1,878,076	-		IAI47_08890	0.57	+0.2
1,878,076	-		IAI47_08890	0.57	+0.5
1,878,076	-		IAI47_08890	0.57	+0.6
1,878,076	-		IAI47_08890	0.57	+0.4
1,878,076	-		IAI47_08890	0.57	+1.1
1,878,076	-		IAI47_08890	0.57	+0.3
1,878,096	+		IAI47_08890	0.59	-0.9
1,878,097	-		IAI47_08890	0.59	+0.3
1,878,129	-		IAI47_08890	0.61	-0.4
1,878,146	-		IAI47_08890	0.63	-0.3
1,878,153	+		IAI47_08890	0.63	-1.1
1,878,154	-		IAI47_08890	0.63	-1.0
1,878,173	+		IAI47_08890	0.65	+0.7
1,878,219	+		IAI47_08890	0.68	-0.1
1,878,219	+		IAI47_08890	0.68	+0.1
1,878,219	+		IAI47_08890	0.68	-0.1
1,878,219	+		IAI47_08890	0.68	-0.9
1,878,219	+		IAI47_08890	0.68	+0.1
1,878,219	+		IAI47_08890	0.68	+0.7
1,878,219	+		IAI47_08890	0.68	-1.5
1,878,220	-		IAI47_08890	0.68	+0.1
1,878,220	-		IAI47_08890	0.68	+1.4
1,878,220	-		IAI47_08890	0.68	-0.9
1,878,220	-		IAI47_08890	0.68	-1.0
1,878,251	+		IAI47_08890	0.71	-1.7
1,878,251	+		IAI47_08890	0.71	-1.0
1,878,251	+		IAI47_08890	0.71	+0.7
1,878,252	-		IAI47_08890	0.71	-0.1
1,878,252	-		IAI47_08890	0.71	+0.7
1,878,287	+		IAI47_08890	0.73	-0.4
1,878,345	+		IAI47_08890	0.78	+0.7
1,878,443	+		IAI47_08890	0.85	+0.2
1,878,470	+		IAI47_08890	0.87	-0.4
1,878,573	+				+0.7
1,878,573	+				-0.2
1,878,573	+				-1.4
1,878,573	+				-0.9
1,878,573	+				-0.3
1,878,578	-				+0.7
1,878,611	+				+0.0
1,878,630	+				+0.3