Strain Fitness in Pantoea sp. MT58 around IAI47_07850

Experiment: Ying_sugar7 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep C; time point 1
1,661,602	+				+0.0
1,661,637	+		IAI47_07845	0.10	+0.3
1,661,637	+		IAI47_07845	0.10	+0.7
1,661,637	+		IAI47_07845	0.10	-0.4
1,661,637	+		IAI47_07845	0.10	+0.4
1,661,637	+		IAI47_07845	0.10	+0.2
1,661,638	-		IAI47_07845	0.10	-1.6
1,661,638	-		IAI47_07845	0.10	-0.2
1,661,638	-		IAI47_07845	0.10	+1.9
1,661,648	-		IAI47_07845	0.11	+1.3
1,661,699	-		IAI47_07845	0.17	+0.3
1,661,708	+		IAI47_07845	0.18	-0.5
1,661,708	+		IAI47_07845	0.18	+0.4
1,661,709	-		IAI47_07845	0.18	-0.6
1,661,709	-		IAI47_07845	0.18	+0.1
1,661,713	+		IAI47_07845	0.19	+0.6
1,661,713	+		IAI47_07845	0.19	+0.4
1,661,713	+		IAI47_07845	0.19	-1.9
1,661,713	+		IAI47_07845	0.19	+0.1
1,661,713	+		IAI47_07845	0.19	-0.0
1,661,713	+		IAI47_07845	0.19	+0.3
1,661,714	-		IAI47_07845	0.19	+0.5
1,661,714	-		IAI47_07845	0.19	-0.3
1,661,714	-		IAI47_07845	0.19	+1.1
1,661,714	-		IAI47_07845	0.19	+0.2
1,661,714	-		IAI47_07845	0.19	-0.9
1,661,714	-		IAI47_07845	0.19	+0.1
1,661,714	-		IAI47_07845	0.19	+0.0
1,661,714	-		IAI47_07845	0.19	-0.9
1,661,734	-		IAI47_07845	0.21	+2.3
1,661,754	+		IAI47_07845	0.23	-0.3
1,661,755	-		IAI47_07845	0.24	-1.9
1,661,842	+		IAI47_07845	0.34	-1.1
1,661,843	-		IAI47_07845	0.34	-0.1
1,661,859	+		IAI47_07845	0.36	+0.7
1,661,859	+		IAI47_07845	0.36	-0.7
1,661,859	+		IAI47_07845	0.36	-1.9
1,661,859	+		IAI47_07845	0.36	-0.8
1,661,859	+		IAI47_07845	0.36	+0.5
1,661,859	+		IAI47_07845	0.36	-0.7
1,661,859	+		IAI47_07845	0.36	-1.3
1,661,859	-		IAI47_07845	0.36	+0.4
1,661,860	-		IAI47_07845	0.36	+1.1
1,661,860	-		IAI47_07845	0.36	-1.0
1,661,860	-		IAI47_07845	0.36	+0.6
1,661,860	-		IAI47_07845	0.36	+1.4
1,661,860	-		IAI47_07845	0.36	-0.6
1,661,866	+		IAI47_07845	0.36	+0.2
1,661,866	+		IAI47_07845	0.36	+0.4
1,661,866	+		IAI47_07845	0.36	+0.0
1,661,867	-		IAI47_07845	0.36	+1.3
1,661,867	-		IAI47_07845	0.36	-0.5
1,661,867	-		IAI47_07845	0.36	+0.1
1,661,867	-		IAI47_07845	0.36	+0.4
1,661,904	+		IAI47_07845	0.41	-1.6
1,661,933	+		IAI47_07845	0.44	-0.3
1,661,981	+		IAI47_07845	0.49	-0.3
1,661,982	-		IAI47_07845	0.50	-0.7
1,662,128	+		IAI47_07845	0.66	-0.3
1,662,128	+		IAI47_07845	0.66	+1.7
1,662,128	+		IAI47_07845	0.66	-1.6
1,662,129	-		IAI47_07845	0.66	+0.1
1,662,129	-		IAI47_07845	0.66	-0.1
1,662,129	-		IAI47_07845	0.66	-0.2
1,662,129	-		IAI47_07845	0.66	+0.0
1,662,129	-		IAI47_07845	0.66	-0.0
1,662,139	+		IAI47_07845	0.68	+0.5
1,662,140	-		IAI47_07845	0.68	+0.7
1,662,174	+		IAI47_07845	0.72	+0.3
1,662,174	+		IAI47_07845	0.72	+1.0
1,662,174	+		IAI47_07845	0.72	+1.5
1,662,175	-		IAI47_07845	0.72	-0.6
1,662,175	-		IAI47_07845	0.72	-1.0
1,662,200	-		IAI47_07845	0.75	+0.2
1,662,255	+		IAI47_07845	0.81	-0.1
1,662,302	+		IAI47_07845	0.86	+0.4
1,662,431	+				+0.0
1,662,449	+				+2.3
1,662,450	-				+0.0
1,662,497	+				+2.7
1,662,497	+				-0.3
1,662,550	-				+0.7
1,662,550	-				+0.7
1,662,571	+				+1.5
1,662,572	-				-0.7
1,662,610	+				-0.9
1,662,610	+				+0.5
1,662,611	-				+0.7
1,662,687	+		IAI47_07850	0.14	-0.9
1,662,804	+		IAI47_07850	0.30	-0.8
1,662,804	+		IAI47_07850	0.30	-0.6
1,662,804	+		IAI47_07850	0.30	-0.1
1,662,982	+		IAI47_07850	0.54	-0.1
1,662,982	+		IAI47_07850	0.54	+0.3
1,662,982	+		IAI47_07850	0.54	+1.7
1,662,983	-		IAI47_07850	0.54	-0.5
1,662,983	-		IAI47_07850	0.54	-0.5
1,662,983	-		IAI47_07850	0.54	-0.1
1,662,983	-		IAI47_07850	0.54	+0.9
1,663,034	+		IAI47_07850	0.61	+0.1
1,663,034	+		IAI47_07850	0.61	-0.9
1,663,035	-		IAI47_07850	0.61	-0.7
1,663,035	-		IAI47_07850	0.61	+0.4
1,663,035	-		IAI47_07850	0.61	+0.1
1,663,035	-		IAI47_07850	0.61	-0.2
1,663,035	-		IAI47_07850	0.61	-1.0
1,663,036	+		IAI47_07850	0.61	+0.5
1,663,036	+		IAI47_07850	0.61	+0.2
1,663,036	+		IAI47_07850	0.61	-1.1
1,663,037	-		IAI47_07850	0.61	-1.5
1,663,037	-		IAI47_07850	0.61	+0.3
1,663,037	-		IAI47_07850	0.61	-0.1
1,663,037	-		IAI47_07850	0.61	-0.3
1,663,037	-		IAI47_07850	0.61	-1.0
1,663,060	+		IAI47_07850	0.65	-0.4
1,663,061	-		IAI47_07850	0.65	+0.9
1,663,061	-		IAI47_07850	0.65	-0.4
1,663,110	+		IAI47_07850	0.71	-1.1
1,663,110	+		IAI47_07850	0.71	-0.3
1,663,111	-		IAI47_07850	0.72	+0.7
1,663,121	+		IAI47_07850	0.73	-0.9
1,663,122	-		IAI47_07850	0.73	-0.3
1,663,122	-		IAI47_07850	0.73	+1.1
1,663,216	+		IAI47_07850	0.86	-2.1
1,663,216	+		IAI47_07850	0.86	-0.9
1,663,217	-		IAI47_07850	0.86	+0.3
1,663,217	-		IAI47_07850	0.86	-0.3
1,663,295	+				-0.9
1,663,307	+				+0.4
1,663,307	+				+0.2
1,663,307	+				+0.7
1,663,308	-				-0.0
1,663,308	-				+0.1
1,663,417	-				+0.0
1,663,417	-				+0.3
1,663,417	-				+0.5
1,663,417	-				-0.3
1,663,462	+		IAI47_07855	0.14	+0.5
1,663,463	-		IAI47_07855	0.15	+0.1
1,663,508	-		IAI47_07855	0.21	+0.6
1,663,508	-		IAI47_07855	0.21	-0.4
1,663,517	+		IAI47_07855	0.22	+0.4
1,663,517	+		IAI47_07855	0.22	+0.3
1,663,518	-		IAI47_07855	0.22	+0.6
1,663,518	-		IAI47_07855	0.22	-0.4
1,663,518	-		IAI47_07855	0.22	-0.0
1,663,518	-		IAI47_07855	0.22	+0.1
1,663,518	-		IAI47_07855	0.22	-0.2
1,663,518	-		IAI47_07855	0.22	+0.5
1,663,518	-		IAI47_07855	0.22	+0.1
1,663,518	-		IAI47_07855	0.22	-0.6
1,663,518	-		IAI47_07855	0.22	+0.5
1,663,569	-		IAI47_07855	0.29	+3.3
1,663,569	-		IAI47_07855	0.29	+0.4
1,663,569	-		IAI47_07855	0.29	+0.4
1,663,608	+		IAI47_07855	0.34	+0.0
1,663,608	+		IAI47_07855	0.34	-0.3
1,663,609	-		IAI47_07855	0.34	-0.9
1,663,609	-		IAI47_07855	0.34	+0.7
1,663,609	-		IAI47_07855	0.34	+0.1
1,663,648	+		IAI47_07855	0.39	+0.7
1,663,648	+		IAI47_07855	0.39	+0.1
1,663,649	-		IAI47_07855	0.40	-0.3
1,663,649	-		IAI47_07855	0.40	-0.3
1,663,649	-		IAI47_07855	0.40	-0.6
1,663,766	+		IAI47_07855	0.55	+0.1
1,663,767	-		IAI47_07855	0.55	+0.7
1,663,780	+		IAI47_07855	0.57	-1.3
1,663,780	+		IAI47_07855	0.57	-0.2
1,663,781	-		IAI47_07855	0.57	-0.1
1,663,795	+		IAI47_07855	0.59	-0.1
1,663,795	+		IAI47_07855	0.59	+0.7
1,663,795	+		IAI47_07855	0.59	-0.7
1,663,795	+		IAI47_07855	0.59	-0.3
1,663,796	-		IAI47_07855	0.59	-0.9
1,663,796	-		IAI47_07855	0.59	-0.8
1,663,796	-		IAI47_07855	0.59	+0.7
1,663,797	+		IAI47_07855	0.59	+1.1
1,663,797	+		IAI47_07855	0.59	-2.3
1,663,797	+		IAI47_07855	0.59	-0.7
1,663,797	+		IAI47_07855	0.59	+0.2
1,663,797	+		IAI47_07855	0.59	+0.9
1,663,797	+		IAI47_07855	0.59	+0.5
1,663,797	+		IAI47_07855	0.59	-0.6
1,663,797	+		IAI47_07855	0.59	+1.1
1,663,797	+		IAI47_07855	0.59	+1.3
1,663,797	+		IAI47_07855	0.59	+0.1
1,663,798	-		IAI47_07855	0.60	-0.3
1,663,798	-		IAI47_07855	0.60	-0.2
1,663,798	-		IAI47_07855	0.60	-1.1
1,663,798	-		IAI47_07855	0.60	+0.0
1,663,798	-		IAI47_07855	0.60	-0.4
1,663,798	-		IAI47_07855	0.60	+0.1
1,663,798	-		IAI47_07855	0.60	-0.3
1,663,798	-		IAI47_07855	0.60	-0.3
1,663,798	-		IAI47_07855	0.60	-0.3
1,663,798	-		IAI47_07855	0.60	-0.9
1,663,798	-		IAI47_07855	0.60	+0.7
1,663,798	-		IAI47_07855	0.60	+2.4
1,663,798	-		IAI47_07855	0.60	-0.3
1,663,861	+		IAI47_07855	0.68	-0.1
1,663,862	-		IAI47_07855	0.68	-0.3
1,663,862	-		IAI47_07855	0.68	+0.4
1,663,862	-		IAI47_07855	0.68	+1.0
1,663,862	-		IAI47_07855	0.68	+1.1
1,663,862	-		IAI47_07855	0.68	+0.4
1,663,862	-		IAI47_07855	0.68	-2.2
1,663,936	+		IAI47_07855	0.78	+0.6
1,663,936	+		IAI47_07855	0.78	+0.6
1,663,937	-		IAI47_07855	0.78	+1.2
1,663,937	-		IAI47_07855	0.78	-0.3
1,663,937	-		IAI47_07855	0.78	+0.5
1,664,010	+		IAI47_07855	0.88	-0.0
1,664,010	+		IAI47_07855	0.88	-0.5
1,664,010	+		IAI47_07855	0.88	+0.4
1,664,010	+		IAI47_07855	0.88	+0.7
1,664,010	+		IAI47_07855	0.88	+0.2
1,664,010	+		IAI47_07855	0.88	+0.1
1,664,011	-		IAI47_07855	0.88	-0.9
1,664,011	-		IAI47_07855	0.88	+0.9
1,664,011	-		IAI47_07855	0.88	+1.3
1,664,018	+		IAI47_07855	0.89	+0.4
1,664,018	+		IAI47_07855	0.89	+0.3
1,664,019	-		IAI47_07855	0.89	-0.0
1,664,019	-		IAI47_07855	0.89	+2.3
1,664,019	-		IAI47_07855	0.89	-0.5
1,664,019	-		IAI47_07855	0.89	+0.6
1,664,033	+				-0.8
1,664,034	-				+1.9
1,664,115	+				-0.3
1,664,126	+				+0.3
1,664,139	+				-0.6
1,664,139	+				-0.1
1,664,139	+				-1.1
1,664,139	+				-0.0
1,664,139	+				+0.1
1,664,140	-				-0.3
1,664,140	-				+0.7
1,664,140	-				+1.0
1,664,140	-				+1.2
1,664,140	-				+0.9