Strain Fitness in Pantoea sp. MT58 around IAI47_05180

Experiment: Ying_sugar7 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep C; time point 1
1,094,962	+		IAI47_05170	0.73	-0.3
1,094,962	+		IAI47_05170	0.73	+1.3
1,094,962	+		IAI47_05170	0.73	-0.7
1,094,962	+		IAI47_05170	0.73	+0.1
1,094,963	-		IAI47_05170	0.73	+1.3
1,095,059	+		IAI47_05170	0.85	+1.9
1,095,060	-		IAI47_05170	0.85	-0.2
1,095,060	-		IAI47_05170	0.85	+1.1
1,095,070	+		IAI47_05170	0.87	-0.0
1,095,070	+		IAI47_05170	0.87	-0.4
1,095,070	+		IAI47_05170	0.87	-0.9
1,095,070	+		IAI47_05170	0.87	-0.5
1,095,070	+		IAI47_05170	0.87	+0.7
1,095,070	+		IAI47_05170	0.87	-1.6
1,095,071	-		IAI47_05170	0.87	-1.3
1,095,071	-		IAI47_05170	0.87	-0.2
1,095,071	-		IAI47_05170	0.87	-2.1
1,095,071	-		IAI47_05170	0.87	+0.6
1,095,071	-		IAI47_05170	0.87	-0.0
1,095,149	+				+1.4
1,095,149	+				+2.0
1,095,149	+				+0.0
1,095,150	-				-0.8
1,095,150	-				-1.1
1,095,150	-				-0.9
1,095,150	-				+0.4
1,095,150	-				+0.5
1,095,151	+				+0.3
1,095,152	-				-1.7
1,095,152	-				-0.9
1,095,152	-				-1.5
1,095,152	-				+0.2
1,095,165	-				+0.7
1,095,285	-				-0.6
1,095,289	+				-2.6
1,095,289	+				+0.6
1,095,290	-				+0.3
1,095,290	-				+0.3
1,095,290	-				+2.0
1,095,290	-				+0.1
1,095,290	-				+0.6
1,095,290	-				+0.3
1,095,382	+		IAI47_05175	0.17	-2.8
1,095,383	-		IAI47_05175	0.17	-2.8
1,095,383	-		IAI47_05175	0.17	-1.5
1,095,383	-		IAI47_05175	0.17	-2.0
1,095,386	+		IAI47_05175	0.17	-1.1
1,095,386	+		IAI47_05175	0.17	-1.5
1,095,386	+		IAI47_05175	0.17	-1.3
1,095,386	+		IAI47_05175	0.17	-2.0
1,095,386	+		IAI47_05175	0.17	-0.9
1,095,386	+		IAI47_05175	0.17	-3.1
1,095,387	-		IAI47_05175	0.17	-3.7
1,095,387	-		IAI47_05175	0.17	-1.9
1,095,387	-		IAI47_05175	0.17	-1.8
1,095,387	-		IAI47_05175	0.17	-1.0
1,095,387	-		IAI47_05175	0.17	+1.7
1,095,387	-		IAI47_05175	0.17	-0.6
1,095,387	-		IAI47_05175	0.17	-0.9
1,095,387	-		IAI47_05175	0.17	+0.7
1,095,416	+		IAI47_05175	0.22	+0.7
1,095,554	+		IAI47_05175	0.44	-2.8
1,095,554	+		IAI47_05175	0.44	-1.7
1,095,554	+		IAI47_05175	0.44	-0.6
1,095,554	+		IAI47_05175	0.44	-1.3
1,095,554	+		IAI47_05175	0.44	-2.1
1,095,554	+		IAI47_05175	0.44	-1.9
1,095,554	+		IAI47_05175	0.44	-0.3
1,095,554	+		IAI47_05175	0.44	-2.9
1,095,554	+		IAI47_05175	0.44	-1.3
1,095,555	-		IAI47_05175	0.44	-1.9
1,095,568	+		IAI47_05175	0.46	-1.9
1,095,568	+		IAI47_05175	0.46	-0.3
1,095,593	+		IAI47_05175	0.50	-2.2
1,095,593	+		IAI47_05175	0.50	-1.9
1,095,593	+		IAI47_05175	0.50	-2.1
1,095,608	+		IAI47_05175	0.52	-0.9
1,095,647	+		IAI47_05175	0.58	-0.9
1,095,647	+		IAI47_05175	0.58	-0.3
1,095,647	+		IAI47_05175	0.58	-2.3
1,095,647	+		IAI47_05175	0.58	-2.3
1,095,647	+		IAI47_05175	0.58	-2.5
1,095,647	+		IAI47_05175	0.58	-1.9
1,095,647	+		IAI47_05175	0.58	-2.1
1,095,648	-		IAI47_05175	0.58	-2.1
1,095,648	-		IAI47_05175	0.58	-1.8
1,095,648	-		IAI47_05175	0.58	-0.3
1,095,648	-		IAI47_05175	0.58	-2.1
1,095,648	-		IAI47_05175	0.58	-1.5
1,095,649	+		IAI47_05175	0.58	-2.6
1,095,679	+		IAI47_05175	0.63	-2.3
1,095,680	-		IAI47_05175	0.63	-4.0
1,095,680	-		IAI47_05175	0.63	-2.1
1,095,790	+		IAI47_05175	0.80	-2.1
1,095,790	+		IAI47_05175	0.80	-3.0
1,095,791	-		IAI47_05175	0.81	-2.1
1,095,875	+				-0.9
1,095,876	-				-2.8
1,095,876	-				-2.6
1,095,897	+				-3.4
1,095,897	+				-2.6
1,095,898	-				+0.7
1,095,898	-				-0.3
1,095,919	+				-2.0
1,095,923	-				-0.9
1,095,952	+				-3.8
1,096,058	-		IAI47_05180	0.14	-2.9
1,096,058	-		IAI47_05180	0.14	-0.9
1,096,068	+		IAI47_05180	0.15	-0.3
1,096,069	-		IAI47_05180	0.15	-1.3
1,096,069	-		IAI47_05180	0.15	-3.6
1,096,069	-		IAI47_05180	0.15	-2.1
1,096,069	-		IAI47_05180	0.15	-1.6
1,096,069	-		IAI47_05180	0.15	-3.2
1,096,069	-		IAI47_05180	0.15	-4.4
1,096,069	-		IAI47_05180	0.15	-2.1
1,096,159	+		IAI47_05180	0.24	-3.0
1,096,159	+		IAI47_05180	0.24	-0.9
1,096,159	+		IAI47_05180	0.24	-3.0
1,096,160	-		IAI47_05180	0.24	-2.5
1,096,160	-		IAI47_05180	0.24	-3.4
1,096,160	-		IAI47_05180	0.24	-3.1
1,096,160	-		IAI47_05180	0.24	-2.5
1,096,160	-		IAI47_05180	0.24	-1.4
1,096,160	-		IAI47_05180	0.24	-3.8
1,096,160	-		IAI47_05180	0.24	-2.3
1,096,172	+		IAI47_05180	0.25	-2.3
1,096,184	-		IAI47_05180	0.26	-3.0
1,096,219	+		IAI47_05180	0.30	-4.1
1,096,219	+		IAI47_05180	0.30	-3.3
1,096,220	-		IAI47_05180	0.30	-3.6
1,096,220	-		IAI47_05180	0.30	-2.9
1,096,226	+		IAI47_05180	0.30	-1.5
1,096,226	+		IAI47_05180	0.30	-3.1
1,096,226	+		IAI47_05180	0.30	-3.6
1,096,226	+		IAI47_05180	0.30	-2.9
1,096,227	-		IAI47_05180	0.30	-3.3
1,096,227	-		IAI47_05180	0.30	-2.9
1,096,227	-		IAI47_05180	0.30	-2.1
1,096,266	+		IAI47_05180	0.34	-3.2
1,096,266	+		IAI47_05180	0.34	-2.3
1,096,266	+		IAI47_05180	0.34	-2.5
1,096,266	+		IAI47_05180	0.34	-2.1
1,096,267	-		IAI47_05180	0.34	-2.5
1,096,267	-		IAI47_05180	0.34	-2.6
1,096,372	-		IAI47_05180	0.44	-1.3
1,096,372	-		IAI47_05180	0.44	-3.8
1,096,413	-		IAI47_05180	0.48	-2.6
1,096,413	-		IAI47_05180	0.48	-5.2
1,096,492	-		IAI47_05180	0.56	-3.8
1,096,492	-		IAI47_05180	0.56	-0.3
1,096,492	-		IAI47_05180	0.56	-1.3
1,096,506	+		IAI47_05180	0.57	-4.4
1,096,506	+		IAI47_05180	0.57	+0.1
1,096,506	+		IAI47_05180	0.57	-0.3
1,096,506	+		IAI47_05180	0.57	-1.9
1,096,506	+		IAI47_05180	0.57	-2.4
1,096,506	+		IAI47_05180	0.57	-0.9
1,096,506	+		IAI47_05180	0.57	-2.8
1,096,506	+		IAI47_05180	0.57	-2.8
1,096,506	+		IAI47_05180	0.57	-2.2
1,096,506	+		IAI47_05180	0.57	-2.9
1,096,506	+		IAI47_05180	0.57	-0.3
1,096,506	+		IAI47_05180	0.57	-3.2
1,096,506	+		IAI47_05180	0.57	-3.4
1,096,507	-		IAI47_05180	0.57	-2.6
1,096,507	-		IAI47_05180	0.57	-1.6
1,096,507	-		IAI47_05180	0.57	-1.6
1,096,507	-		IAI47_05180	0.57	-0.3
1,096,507	-		IAI47_05180	0.57	-4.1
1,096,507	-		IAI47_05180	0.57	-3.9
1,096,507	-		IAI47_05180	0.57	-2.8
1,096,507	-		IAI47_05180	0.57	-1.3
1,096,507	-		IAI47_05180	0.57	-1.9
1,096,507	-		IAI47_05180	0.57	-2.9
1,096,507	-		IAI47_05180	0.57	-1.3
1,096,538	+		IAI47_05180	0.60	-3.3
1,096,626	+		IAI47_05180	0.69	-3.1
1,096,626	+		IAI47_05180	0.69	-3.1
1,096,627	-		IAI47_05180	0.69	-2.6
1,096,627	-		IAI47_05180	0.69	-1.6
1,096,629	+		IAI47_05180	0.69	-2.5
1,096,629	+		IAI47_05180	0.69	-2.3
1,096,630	-		IAI47_05180	0.69	-3.8
1,096,630	-		IAI47_05180	0.69	-3.2
1,096,630	-		IAI47_05180	0.69	-1.9
1,096,630	-		IAI47_05180	0.69	-1.5
1,096,661	+		IAI47_05180	0.72	-3.0
1,096,661	+		IAI47_05180	0.72	-1.6
1,096,662	-		IAI47_05180	0.72	-3.1
1,096,662	-		IAI47_05180	0.72	-2.8
1,096,662	-		IAI47_05180	0.72	-2.6
1,096,788	+		IAI47_05180	0.84	-2.0
1,096,865	+				-2.9
1,096,865	+				-1.3
1,096,865	+				-3.6
1,096,874	-				-1.5
1,096,874	-				-2.5
1,096,874	-				-1.3
1,096,874	-				-2.5
1,096,874	-				-4.1
1,096,876	+				-3.6
1,096,877	-				-3.1
1,096,877	-				-3.3
1,096,906	+				-2.0
1,096,906	+				-1.3
1,096,907	-				-3.0
1,096,907	-				-4.0
1,096,907	-				-3.0
1,096,927	-				-3.0
1,097,006	+				-1.9
1,097,007	-				-3.0
1,097,007	-				-2.3
1,097,062	-				+2.2
1,097,069	+				+0.4
1,097,069	+				+0.8
1,097,069	+				+1.2
1,097,069	+				-0.6
1,097,069	+				+1.3
1,097,070	-				-0.0
1,097,070	-				+1.1
1,097,070	-				-0.3
1,097,070	-				+0.9
1,097,070	-				+0.4
1,097,070	-				-1.5
1,097,081	+				-0.6
1,097,081	+				-1.9
1,097,132	+				+0.6
1,097,135	-				-0.1
1,097,135	-				+0.4
1,097,219	+				-0.0
1,097,219	+				-0.3
1,097,219	+				+0.4
1,097,219	+				-0.3
1,097,220	-				+0.7
1,097,220	-				-1.1
1,097,220	-				-1.2
1,097,220	-				-0.4
1,097,220	-				+0.5
1,097,246	+		IAI47_05185	0.10	+0.7
1,097,247	-		IAI47_05185	0.11	+1.3
1,097,301	+		IAI47_05185	0.19	-1.4
1,097,301	+		IAI47_05185	0.19	+0.9
1,097,301	+		IAI47_05185	0.19	+1.0
1,097,301	+		IAI47_05185	0.19	-0.3
1,097,302	-		IAI47_05185	0.19	+1.4
1,097,302	-		IAI47_05185	0.19	+1.7
1,097,302	-		IAI47_05185	0.19	-0.4
1,097,362	+		IAI47_05185	0.29	-0.6
1,097,484	+		IAI47_05185	0.48	+1.3
1,097,485	-		IAI47_05185	0.48	-0.0
1,097,485	-		IAI47_05185	0.48	+0.3
1,097,517	+		IAI47_05185	0.54	+0.7
1,097,517	+		IAI47_05185	0.54	+0.0
1,097,517	+		IAI47_05185	0.54	+1.2
1,097,517	+		IAI47_05185	0.54	-0.5
1,097,518	-		IAI47_05185	0.54	-1.1
1,097,537	+		IAI47_05185	0.57	-0.0
1,097,537	+		IAI47_05185	0.57	-0.6
1,097,537	+		IAI47_05185	0.57	+0.7
1,097,538	-		IAI47_05185	0.57	+1.1
1,097,538	-		IAI47_05185	0.57	-0.2
1,097,716	-		IAI47_05185	0.85	+0.2
1,097,716	-		IAI47_05185	0.85	+0.5
1,097,754	+				-0.9
1,097,754	+				+0.1
1,097,754	+				+3.3
1,097,755	-				+1.4
1,097,755	-				-1.6
1,097,755	-				-0.0
1,097,755	-				-0.7
1,097,755	-				+0.2
1,097,805	+				+0.4
1,097,806	-				+0.7
1,097,806	-				+0.1
1,097,939	+				-0.3
1,097,939	+				-0.7
1,097,940	-				+0.1
1,097,940	-				+0.4
1,097,940	-				-0.0
1,097,940	-				+0.8
1,097,940	-				-0.7