Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03370

Experiment: Glucuronamide (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_03369 and MPMX20_03370 are separated by 8 nucleotidesMPMX20_03370 and MPMX20_03371 are separated by 11 nucleotides MPMX20_03369: MPMX20_03369 - Inositol 2-dehydrogenase/D-chiro-inositol 3-dehydrogenase, at 3,545,753 to 3,546,886 _03369 MPMX20_03370: MPMX20_03370 - Ribose import permease protein RbsC, at 3,546,895 to 3,547,923 _03370 MPMX20_03371: MPMX20_03371 - Ribose import ATP-binding protein RbsA, at 3,547,935 to 3,549,482 _03371 Position (kb) 3546 3547 3548Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3545.976 kb on + strand, within MPMX20_03369at 3545.976 kb on + strand, within MPMX20_03369at 3546.055 kb on + strand, within MPMX20_03369at 3546.063 kb on - strand, within MPMX20_03369at 3546.090 kb on - strand, within MPMX20_03369at 3546.161 kb on - strand, within MPMX20_03369at 3546.187 kb on - strand, within MPMX20_03369at 3546.221 kb on + strand, within MPMX20_03369at 3546.261 kb on + strand, within MPMX20_03369at 3546.269 kb on - strand, within MPMX20_03369at 3546.276 kb on - strand, within MPMX20_03369at 3546.279 kb on + strand, within MPMX20_03369at 3546.352 kb on + strand, within MPMX20_03369at 3546.352 kb on + strand, within MPMX20_03369at 3546.352 kb on + strand, within MPMX20_03369at 3546.352 kb on + strand, within MPMX20_03369at 3546.352 kb on + strand, within MPMX20_03369at 3546.352 kb on + strand, within MPMX20_03369at 3546.352 kb on + strand, within MPMX20_03369at 3546.352 kb on + strand, within MPMX20_03369at 3546.352 kb on + strand, within MPMX20_03369at 3546.360 kb on - strand, within MPMX20_03369at 3546.360 kb on - strand, within MPMX20_03369at 3546.360 kb on - strand, within MPMX20_03369at 3546.360 kb on - strand, within MPMX20_03369at 3546.360 kb on - strand, within MPMX20_03369at 3546.441 kb on - strand, within MPMX20_03369at 3546.577 kb on + strand, within MPMX20_03369at 3546.739 kb on - strand, within MPMX20_03369at 3546.796 kb on + strandat 3546.796 kb on + strandat 3546.796 kb on + strandat 3546.797 kb on + strandat 3546.804 kb on - strandat 3546.805 kb on - strandat 3546.805 kb on - strandat 3546.817 kb on + strandat 3546.868 kb on - strandat 3546.877 kb on - strandat 3546.913 kb on + strandat 3546.926 kb on - strandat 3546.926 kb on - strandat 3546.984 kb on - strandat 3546.991 kb on - strandat 3547.007 kb on - strand, within MPMX20_03370at 3547.033 kb on - strand, within MPMX20_03370at 3547.057 kb on - strand, within MPMX20_03370at 3547.067 kb on - strand, within MPMX20_03370at 3547.069 kb on - strand, within MPMX20_03370at 3547.103 kb on - strand, within MPMX20_03370at 3547.116 kb on + strand, within MPMX20_03370at 3547.116 kb on + strand, within MPMX20_03370at 3547.116 kb on + strand, within MPMX20_03370at 3547.124 kb on - strand, within MPMX20_03370at 3547.124 kb on - strand, within MPMX20_03370at 3547.124 kb on - strand, within MPMX20_03370at 3547.140 kb on + strand, within MPMX20_03370at 3547.150 kb on + strand, within MPMX20_03370at 3547.150 kb on + strand, within MPMX20_03370at 3547.158 kb on - strand, within MPMX20_03370at 3547.158 kb on - strand, within MPMX20_03370at 3547.158 kb on - strand, within MPMX20_03370at 3547.206 kb on + strand, within MPMX20_03370at 3547.211 kb on + strand, within MPMX20_03370at 3547.256 kb on + strand, within MPMX20_03370at 3547.264 kb on - strand, within MPMX20_03370at 3547.290 kb on - strand, within MPMX20_03370at 3547.383 kb on + strand, within MPMX20_03370at 3547.443 kb on + strand, within MPMX20_03370at 3547.512 kb on + strand, within MPMX20_03370at 3547.520 kb on - strand, within MPMX20_03370at 3547.543 kb on + strand, within MPMX20_03370at 3547.610 kb on + strand, within MPMX20_03370at 3547.610 kb on + strand, within MPMX20_03370at 3547.705 kb on + strand, within MPMX20_03370at 3547.759 kb on + strand, within MPMX20_03370at 3548.086 kb on - strandat 3548.140 kb on + strand, within MPMX20_03371at 3548.188 kb on + strand, within MPMX20_03371at 3548.202 kb on + strand, within MPMX20_03371at 3548.248 kb on + strand, within MPMX20_03371at 3548.272 kb on - strand, within MPMX20_03371at 3548.338 kb on - strand, within MPMX20_03371at 3548.350 kb on - strand, within MPMX20_03371at 3548.409 kb on + strand, within MPMX20_03371at 3548.417 kb on - strand, within MPMX20_03371at 3548.417 kb on - strand, within MPMX20_03371at 3548.417 kb on - strand, within MPMX20_03371at 3548.460 kb on - strand, within MPMX20_03371at 3548.462 kb on + strand, within MPMX20_03371at 3548.462 kb on + strand, within MPMX20_03371at 3548.470 kb on - strand, within MPMX20_03371at 3548.474 kb on + strand, within MPMX20_03371at 3548.510 kb on + strand, within MPMX20_03371at 3548.510 kb on + strand, within MPMX20_03371at 3548.518 kb on - strand, within MPMX20_03371at 3548.518 kb on - strand, within MPMX20_03371at 3548.571 kb on + strand, within MPMX20_03371at 3548.575 kb on + strand, within MPMX20_03371at 3548.585 kb on + strand, within MPMX20_03371at 3548.595 kb on + strand, within MPMX20_03371at 3548.595 kb on + strand, within MPMX20_03371at 3548.603 kb on + strand, within MPMX20_03371at 3548.603 kb on - strand, within MPMX20_03371at 3548.603 kb on - strand, within MPMX20_03371at 3548.618 kb on + strand, within MPMX20_03371at 3548.626 kb on - strand, within MPMX20_03371at 3548.639 kb on + strand, within MPMX20_03371at 3548.639 kb on + strand, within MPMX20_03371at 3548.639 kb on + strand, within MPMX20_03371at 3548.639 kb on + strand, within MPMX20_03371at 3548.647 kb on - strand, within MPMX20_03371at 3548.647 kb on - strand, within MPMX20_03371at 3548.647 kb on - strand, within MPMX20_03371at 3548.647 kb on - strand, within MPMX20_03371at 3548.647 kb on - strand, within MPMX20_03371at 3548.647 kb on - strand, within MPMX20_03371at 3548.647 kb on - strand, within MPMX20_03371at 3548.647 kb on - strand, within MPMX20_03371

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (N)
remove
3,545,976 + MPMX20_03369 0.20 +1.1
3,545,976 + MPMX20_03369 0.20 +0.8
3,546,055 + MPMX20_03369 0.27 +1.2
3,546,063 - MPMX20_03369 0.27 +0.3
3,546,090 - MPMX20_03369 0.30 -0.8
3,546,161 - MPMX20_03369 0.36 +1.1
3,546,187 - MPMX20_03369 0.38 +0.2
3,546,221 + MPMX20_03369 0.41 +1.1
3,546,261 + MPMX20_03369 0.45 +0.3
3,546,269 - MPMX20_03369 0.46 -0.5
3,546,276 - MPMX20_03369 0.46 +0.2
3,546,279 + MPMX20_03369 0.46 -1.1
3,546,352 + MPMX20_03369 0.53 +0.8
3,546,352 + MPMX20_03369 0.53 -0.6
3,546,352 + MPMX20_03369 0.53 -1.5
3,546,352 + MPMX20_03369 0.53 -2.2
3,546,352 + MPMX20_03369 0.53 +0.7
3,546,352 + MPMX20_03369 0.53 +0.3
3,546,352 + MPMX20_03369 0.53 +0.9
3,546,352 + MPMX20_03369 0.53 -1.5
3,546,352 + MPMX20_03369 0.53 -0.8
3,546,360 - MPMX20_03369 0.54 +0.7
3,546,360 - MPMX20_03369 0.54 +0.7
3,546,360 - MPMX20_03369 0.54 -0.1
3,546,360 - MPMX20_03369 0.54 +0.4
3,546,360 - MPMX20_03369 0.54 -0.6
3,546,441 - MPMX20_03369 0.61 +1.0
3,546,577 + MPMX20_03369 0.73 -0.6
3,546,739 - MPMX20_03369 0.87 +0.1
3,546,796 + +0.1
3,546,796 + -3.9
3,546,796 + +1.5
3,546,797 + +0.8
3,546,804 - +0.1
3,546,805 - +2.3
3,546,805 - +1.5
3,546,817 + -1.8
3,546,868 - +0.1
3,546,877 - +0.3
3,546,913 + +0.1
3,546,926 - +0.2
3,546,926 - -2.3
3,546,984 - -2.0
3,546,991 - -1.6
3,547,007 - MPMX20_03370 0.11 +1.2
3,547,033 - MPMX20_03370 0.13 -4.1
3,547,057 - MPMX20_03370 0.16 +0.2
3,547,067 - MPMX20_03370 0.17 +2.1
3,547,069 - MPMX20_03370 0.17 +1.6
3,547,103 - MPMX20_03370 0.20 -0.1
3,547,116 + MPMX20_03370 0.21 -0.9
3,547,116 + MPMX20_03370 0.21 +0.1
3,547,116 + MPMX20_03370 0.21 -1.5
3,547,124 - MPMX20_03370 0.22 +0.7
3,547,124 - MPMX20_03370 0.22 +0.6
3,547,124 - MPMX20_03370 0.22 +0.9
3,547,140 + MPMX20_03370 0.24 -2.1
3,547,150 + MPMX20_03370 0.25 +0.9
3,547,150 + MPMX20_03370 0.25 +1.6
3,547,158 - MPMX20_03370 0.26 +0.7
3,547,158 - MPMX20_03370 0.26 +0.9
3,547,158 - MPMX20_03370 0.26 +0.4
3,547,206 + MPMX20_03370 0.30 -0.3
3,547,211 + MPMX20_03370 0.31 +1.1
3,547,256 + MPMX20_03370 0.35 +1.5
3,547,264 - MPMX20_03370 0.36 +0.4
3,547,290 - MPMX20_03370 0.38 +1.3
3,547,383 + MPMX20_03370 0.47 +0.3
3,547,443 + MPMX20_03370 0.53 +0.6
3,547,512 + MPMX20_03370 0.60 -0.1
3,547,520 - MPMX20_03370 0.61 +0.9
3,547,543 + MPMX20_03370 0.63 -0.7
3,547,610 + MPMX20_03370 0.69 +0.4
3,547,610 + MPMX20_03370 0.69 +1.1
3,547,705 + MPMX20_03370 0.79 +0.6
3,547,759 + MPMX20_03370 0.84 -1.8
3,548,086 - +1.1
3,548,140 + MPMX20_03371 0.13 +0.5
3,548,188 + MPMX20_03371 0.16 +0.4
3,548,202 + MPMX20_03371 0.17 +0.9
3,548,248 + MPMX20_03371 0.20 +0.6
3,548,272 - MPMX20_03371 0.22 +0.7
3,548,338 - MPMX20_03371 0.26 +2.3
3,548,350 - MPMX20_03371 0.27 -1.6
3,548,409 + MPMX20_03371 0.31 +0.6
3,548,417 - MPMX20_03371 0.31 -0.3
3,548,417 - MPMX20_03371 0.31 +0.9
3,548,417 - MPMX20_03371 0.31 +0.2
3,548,460 - MPMX20_03371 0.34 +0.5
3,548,462 + MPMX20_03371 0.34 -1.3
3,548,462 + MPMX20_03371 0.34 -2.0
3,548,470 - MPMX20_03371 0.35 -0.3
3,548,474 + MPMX20_03371 0.35 -0.3
3,548,510 + MPMX20_03371 0.37 -0.3
3,548,510 + MPMX20_03371 0.37 -0.3
3,548,518 - MPMX20_03371 0.38 -0.6
3,548,518 - MPMX20_03371 0.38 -2.3
3,548,571 + MPMX20_03371 0.41 +0.0
3,548,575 + MPMX20_03371 0.41 +0.0
3,548,585 + MPMX20_03371 0.42 +0.8
3,548,595 + MPMX20_03371 0.43 -1.9
3,548,595 + MPMX20_03371 0.43 +1.2
3,548,603 + MPMX20_03371 0.43 -0.5
3,548,603 - MPMX20_03371 0.43 -1.6
3,548,603 - MPMX20_03371 0.43 +0.3
3,548,618 + MPMX20_03371 0.44 -0.5
3,548,626 - MPMX20_03371 0.45 +1.1
3,548,639 + MPMX20_03371 0.45 -2.0
3,548,639 + MPMX20_03371 0.45 +0.3
3,548,639 + MPMX20_03371 0.45 -0.1
3,548,639 + MPMX20_03371 0.45 -1.2
3,548,647 - MPMX20_03371 0.46 -0.9
3,548,647 - MPMX20_03371 0.46 -0.3
3,548,647 - MPMX20_03371 0.46 +0.8
3,548,647 - MPMX20_03371 0.46 -0.0
3,548,647 - MPMX20_03371 0.46 -0.3
3,548,647 - MPMX20_03371 0.46 -1.5
3,548,647 - MPMX20_03371 0.46 +1.1
3,548,647 - MPMX20_03371 0.46 -0.6

Or see this region's nucleotide sequence