Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03223

Experiment: Glucuronamide (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03222 and MPMX20_03223 are separated by 75 nucleotidesMPMX20_03223 and MPMX20_03224 are separated by 11 nucleotidesMPMX20_03224 and MPMX20_03225 are separated by 92 nucleotides MPMX20_03222: MPMX20_03222 - hypothetical protein, at 3,394,492 to 3,396,324 _03222 MPMX20_03223: MPMX20_03223 - Hexitol phosphatase A, at 3,396,400 to 3,397,059 _03223 MPMX20_03224: MPMX20_03224 - hypothetical protein, at 3,397,071 to 3,397,565 _03224 MPMX20_03225: MPMX20_03225 - hypothetical protein, at 3,397,658 to 3,398,113 _03225 Position (kb) 3396 3397 3398Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3395.425 kb on - strand, within MPMX20_03222at 3395.452 kb on - strand, within MPMX20_03222at 3395.452 kb on - strand, within MPMX20_03222at 3395.452 kb on - strand, within MPMX20_03222at 3395.452 kb on - strand, within MPMX20_03222at 3395.498 kb on - strand, within MPMX20_03222at 3395.503 kb on - strand, within MPMX20_03222at 3395.574 kb on + strand, within MPMX20_03222at 3395.574 kb on + strand, within MPMX20_03222at 3395.582 kb on - strand, within MPMX20_03222at 3395.582 kb on - strand, within MPMX20_03222at 3395.582 kb on - strand, within MPMX20_03222at 3395.603 kb on - strand, within MPMX20_03222at 3395.685 kb on - strand, within MPMX20_03222at 3395.712 kb on + strand, within MPMX20_03222at 3395.735 kb on + strand, within MPMX20_03222at 3395.745 kb on - strand, within MPMX20_03222at 3395.745 kb on - strand, within MPMX20_03222at 3395.752 kb on + strand, within MPMX20_03222at 3395.771 kb on - strand, within MPMX20_03222at 3395.787 kb on + strand, within MPMX20_03222at 3395.819 kb on - strand, within MPMX20_03222at 3395.840 kb on - strand, within MPMX20_03222at 3395.869 kb on - strand, within MPMX20_03222at 3395.902 kb on + strand, within MPMX20_03222at 3395.933 kb on - strand, within MPMX20_03222at 3395.953 kb on + strand, within MPMX20_03222at 3395.996 kb on - strand, within MPMX20_03222at 3396.107 kb on + strand, within MPMX20_03222at 3396.158 kb on - strandat 3396.200 kb on + strandat 3396.210 kb on + strandat 3396.210 kb on + strandat 3396.210 kb on + strandat 3396.284 kb on + strandat 3396.302 kb on + strandat 3396.346 kb on - strandat 3396.419 kb on + strandat 3396.426 kb on - strandat 3396.426 kb on - strandat 3396.428 kb on - strandat 3396.496 kb on + strand, within MPMX20_03223at 3396.556 kb on + strand, within MPMX20_03223at 3396.574 kb on - strand, within MPMX20_03223at 3396.597 kb on + strand, within MPMX20_03223at 3396.612 kb on + strand, within MPMX20_03223at 3396.620 kb on - strand, within MPMX20_03223at 3396.620 kb on - strand, within MPMX20_03223at 3396.620 kb on - strand, within MPMX20_03223at 3396.679 kb on + strand, within MPMX20_03223at 3396.712 kb on - strand, within MPMX20_03223at 3396.750 kb on - strand, within MPMX20_03223at 3396.797 kb on + strand, within MPMX20_03223at 3396.841 kb on - strand, within MPMX20_03223at 3396.851 kb on - strand, within MPMX20_03223at 3396.851 kb on - strand, within MPMX20_03223at 3396.919 kb on - strand, within MPMX20_03223at 3396.919 kb on - strand, within MPMX20_03223at 3397.046 kb on + strandat 3397.046 kb on + strandat 3397.046 kb on + strandat 3397.046 kb on + strandat 3397.054 kb on + strandat 3397.054 kb on - strandat 3397.054 kb on - strandat 3397.054 kb on - strandat 3397.054 kb on - strandat 3397.054 kb on - strandat 3397.065 kb on + strandat 3397.146 kb on - strand, within MPMX20_03224at 3397.181 kb on + strand, within MPMX20_03224at 3397.187 kb on + strand, within MPMX20_03224at 3397.189 kb on - strand, within MPMX20_03224at 3397.189 kb on - strand, within MPMX20_03224at 3397.203 kb on + strand, within MPMX20_03224at 3397.226 kb on - strand, within MPMX20_03224at 3397.258 kb on - strand, within MPMX20_03224at 3397.259 kb on - strand, within MPMX20_03224at 3397.277 kb on + strand, within MPMX20_03224at 3397.367 kb on + strand, within MPMX20_03224at 3397.409 kb on + strand, within MPMX20_03224at 3397.417 kb on - strand, within MPMX20_03224at 3397.427 kb on + strand, within MPMX20_03224at 3397.435 kb on - strand, within MPMX20_03224at 3397.435 kb on - strand, within MPMX20_03224at 3397.450 kb on - strand, within MPMX20_03224at 3397.497 kb on - strand, within MPMX20_03224at 3397.562 kb on - strandat 3397.576 kb on - strandat 3397.591 kb on - strandat 3397.613 kb on + strandat 3397.617 kb on + strandat 3397.718 kb on - strand, within MPMX20_03225at 3397.747 kb on - strand, within MPMX20_03225at 3397.753 kb on - strand, within MPMX20_03225at 3397.815 kb on + strand, within MPMX20_03225at 3397.850 kb on + strand, within MPMX20_03225at 3397.910 kb on - strand, within MPMX20_03225at 3397.910 kb on - strand, within MPMX20_03225at 3397.939 kb on + strand, within MPMX20_03225at 3398.013 kb on - strand, within MPMX20_03225at 3398.057 kb on - strand, within MPMX20_03225at 3398.057 kb on - strand, within MPMX20_03225

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (N)
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3,395,425 - MPMX20_03222 0.51 -1.4
3,395,452 - MPMX20_03222 0.52 -0.4
3,395,452 - MPMX20_03222 0.52 -1.6
3,395,452 - MPMX20_03222 0.52 -0.3
3,395,452 - MPMX20_03222 0.52 -0.4
3,395,498 - MPMX20_03222 0.55 -0.1
3,395,503 - MPMX20_03222 0.55 +1.2
3,395,574 + MPMX20_03222 0.59 -0.1
3,395,574 + MPMX20_03222 0.59 +1.6
3,395,582 - MPMX20_03222 0.59 -0.5
3,395,582 - MPMX20_03222 0.59 +0.1
3,395,582 - MPMX20_03222 0.59 +1.5
3,395,603 - MPMX20_03222 0.61 +1.2
3,395,685 - MPMX20_03222 0.65 -1.5
3,395,712 + MPMX20_03222 0.67 -1.6
3,395,735 + MPMX20_03222 0.68 -0.4
3,395,745 - MPMX20_03222 0.68 -3.6
3,395,745 - MPMX20_03222 0.68 +0.6
3,395,752 + MPMX20_03222 0.69 -0.8
3,395,771 - MPMX20_03222 0.70 +1.2
3,395,787 + MPMX20_03222 0.71 +0.1
3,395,819 - MPMX20_03222 0.72 -0.2
3,395,840 - MPMX20_03222 0.74 +2.9
3,395,869 - MPMX20_03222 0.75 +0.4
3,395,902 + MPMX20_03222 0.77 -0.8
3,395,933 - MPMX20_03222 0.79 -2.0
3,395,953 + MPMX20_03222 0.80 -0.2
3,395,996 - MPMX20_03222 0.82 +0.4
3,396,107 + MPMX20_03222 0.88 +1.4
3,396,158 - +0.2
3,396,200 + -0.1
3,396,210 + +2.5
3,396,210 + +0.9
3,396,210 + -0.1
3,396,284 + -2.6
3,396,302 + -3.0
3,396,346 - -1.1
3,396,419 + +0.2
3,396,426 - -0.8
3,396,426 - -0.4
3,396,428 - +0.4
3,396,496 + MPMX20_03223 0.15 +1.6
3,396,556 + MPMX20_03223 0.24 +0.9
3,396,574 - MPMX20_03223 0.26 +1.3
3,396,597 + MPMX20_03223 0.30 -1.2
3,396,612 + MPMX20_03223 0.32 +1.7
3,396,620 - MPMX20_03223 0.33 +0.6
3,396,620 - MPMX20_03223 0.33 +1.5
3,396,620 - MPMX20_03223 0.33 -0.5
3,396,679 + MPMX20_03223 0.42 +1.4
3,396,712 - MPMX20_03223 0.47 -0.2
3,396,750 - MPMX20_03223 0.53 +1.1
3,396,797 + MPMX20_03223 0.60 -1.1
3,396,841 - MPMX20_03223 0.67 -1.6
3,396,851 - MPMX20_03223 0.68 +0.3
3,396,851 - MPMX20_03223 0.68 +2.4
3,396,919 - MPMX20_03223 0.79 +0.2
3,396,919 - MPMX20_03223 0.79 +0.4
3,397,046 + -0.1
3,397,046 + -0.6
3,397,046 + -1.2
3,397,046 + -2.5
3,397,054 + -1.9
3,397,054 - -0.3
3,397,054 - +1.9
3,397,054 - -0.4
3,397,054 - -0.2
3,397,054 - +0.4
3,397,065 + -1.9
3,397,146 - MPMX20_03224 0.15 +0.4
3,397,181 + MPMX20_03224 0.22 +0.2
3,397,187 + MPMX20_03224 0.23 -2.2
3,397,189 - MPMX20_03224 0.24 -0.8
3,397,189 - MPMX20_03224 0.24 +0.2
3,397,203 + MPMX20_03224 0.27 -0.6
3,397,226 - MPMX20_03224 0.31 -0.1
3,397,258 - MPMX20_03224 0.38 +1.1
3,397,259 - MPMX20_03224 0.38 +1.5
3,397,277 + MPMX20_03224 0.42 +0.0
3,397,367 + MPMX20_03224 0.60 -0.2
3,397,409 + MPMX20_03224 0.68 -0.8
3,397,417 - MPMX20_03224 0.70 +1.1
3,397,427 + MPMX20_03224 0.72 -1.5
3,397,435 - MPMX20_03224 0.74 -1.0
3,397,435 - MPMX20_03224 0.74 +0.4
3,397,450 - MPMX20_03224 0.77 +0.2
3,397,497 - MPMX20_03224 0.86 -0.5
3,397,562 - -0.0
3,397,576 - +0.8
3,397,591 - +0.2
3,397,613 + -1.0
3,397,617 + +0.2
3,397,718 - MPMX20_03225 0.13 +0.8
3,397,747 - MPMX20_03225 0.20 -1.5
3,397,753 - MPMX20_03225 0.21 -3.5
3,397,815 + MPMX20_03225 0.34 +1.8
3,397,850 + MPMX20_03225 0.42 +0.8
3,397,910 - MPMX20_03225 0.55 -2.4
3,397,910 - MPMX20_03225 0.55 -0.8
3,397,939 + MPMX20_03225 0.62 -0.6
3,398,013 - MPMX20_03225 0.78 +0.1
3,398,057 - MPMX20_03225 0.88 +0.3
3,398,057 - MPMX20_03225 0.88 +0.2

Or see this region's nucleotide sequence