Strain Fitness in Pantoea sp. MT58 around IAI47_16350

Experiment: Ying_sugar7 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep B; time point 1
3,466,457	+		IAI47_16345	0.36	+0.1
3,466,458	-		IAI47_16345	0.36	-0.3
3,466,485	-		IAI47_16345	0.38	+0.4
3,466,485	-		IAI47_16345	0.38	+0.5
3,466,485	-		IAI47_16345	0.38	+1.4
3,466,631	+		IAI47_16345	0.49	-0.6
3,466,631	+		IAI47_16345	0.49	-0.7
3,466,631	+		IAI47_16345	0.49	-0.3
3,466,631	+		IAI47_16345	0.49	-0.6
3,466,632	-		IAI47_16345	0.49	-0.3
3,466,674	-		IAI47_16345	0.52	-0.7
3,466,733	-		IAI47_16345	0.56	+2.3
3,466,733	-		IAI47_16345	0.56	-1.3
3,466,733	-		IAI47_16345	0.56	+0.1
3,466,733	-		IAI47_16345	0.56	+1.0
3,466,883	+		IAI47_16345	0.67	+0.7
3,466,883	+		IAI47_16345	0.67	+0.0
3,466,883	+		IAI47_16345	0.67	+0.3
3,466,883	+		IAI47_16345	0.67	+0.4
3,466,883	+		IAI47_16345	0.67	+1.1
3,466,883	+		IAI47_16345	0.67	-1.1
3,466,884	-		IAI47_16345	0.67	-1.3
3,466,903	-		IAI47_16345	0.68	-1.1
3,466,960	+		IAI47_16345	0.73	+0.9
3,466,961	-		IAI47_16345	0.73	-1.2
3,467,079	+		IAI47_16345	0.81	+0.2
3,467,080	-		IAI47_16345	0.81	+0.2
3,467,119	-		IAI47_16345	0.84	+0.7
3,467,179	+		IAI47_16345	0.88	-0.7
3,467,198	+		IAI47_16345	0.90	-1.6
3,467,288	-				+0.3
3,467,306	+				-0.1
3,467,345	+				+0.7
3,467,345	+				-0.9
3,467,345	+				+1.3
3,467,345	+				-0.1
3,467,354	+				+0.1
3,467,354	+				-1.0
3,467,355	-				+0.6
3,467,355	-				+0.4
3,467,405	-				-1.1
3,467,448	+				-3.8
3,467,448	+				-1.6
3,467,448	+				-0.3
3,467,448	+				-2.5
3,467,448	+				-2.9
3,467,449	-				-2.3
3,467,449	-				-1.9
3,467,449	-				-5.4
3,467,449	-				-1.6
3,467,454	+		IAI47_16350	0.10	+0.7
3,467,454	+		IAI47_16350	0.10	-1.3
3,467,454	+		IAI47_16350	0.10	-0.3
3,467,455	-		IAI47_16350	0.10	-3.5
3,467,455	-		IAI47_16350	0.10	-2.5
3,467,455	-		IAI47_16350	0.10	-4.1
3,467,547	+		IAI47_16350	0.20	-3.2
3,467,547	+		IAI47_16350	0.20	-2.6
3,467,548	-		IAI47_16350	0.20	-2.5
3,467,585	+		IAI47_16350	0.24	-3.1
3,467,585	+		IAI47_16350	0.24	-1.6
3,467,585	+		IAI47_16350	0.24	-3.9
3,467,586	-		IAI47_16350	0.24	-3.4
3,467,586	-		IAI47_16350	0.24	-2.3
3,467,586	-		IAI47_16350	0.24	-3.3
3,467,586	-		IAI47_16350	0.24	-3.2
3,467,586	-		IAI47_16350	0.24	-3.1
3,467,586	-		IAI47_16350	0.24	-0.9
3,467,586	-		IAI47_16350	0.24	-0.1
3,467,586	-		IAI47_16350	0.24	-2.8
3,467,690	+		IAI47_16350	0.34	-3.8
3,467,690	+		IAI47_16350	0.34	-2.5
3,467,699	+		IAI47_16350	0.35	-2.1
3,467,702	+		IAI47_16350	0.36	-2.5
3,467,702	+		IAI47_16350	0.36	-3.0
3,467,702	+		IAI47_16350	0.36	-3.5
3,467,702	+		IAI47_16350	0.36	-2.9
3,467,702	+		IAI47_16350	0.36	-0.3
3,467,703	-		IAI47_16350	0.36	-4.8
3,467,703	-		IAI47_16350	0.36	-2.1
3,467,703	-		IAI47_16350	0.36	-0.9
3,467,703	-		IAI47_16350	0.36	-3.2
3,467,706	+		IAI47_16350	0.36	-3.3
3,467,706	+		IAI47_16350	0.36	-0.9
3,467,706	+		IAI47_16350	0.36	-1.6
3,467,707	-		IAI47_16350	0.36	-3.2
3,467,725	-		IAI47_16350	0.38	-3.8
3,467,782	+		IAI47_16350	0.44	-1.9
3,467,782	+		IAI47_16350	0.44	-0.3
3,467,783	-		IAI47_16350	0.44	-2.6
3,467,800	+		IAI47_16350	0.46	-2.1
3,467,800	+		IAI47_16350	0.46	-1.9
3,467,800	+		IAI47_16350	0.46	-2.5
3,467,801	-		IAI47_16350	0.46	-2.3
3,467,801	-		IAI47_16350	0.46	-0.9
3,467,814	+		IAI47_16350	0.47	-3.1
3,468,011	+		IAI47_16350	0.67	-2.1
3,468,107	+		IAI47_16350	0.77	-1.6
3,468,164	+		IAI47_16350	0.83	-2.1
3,468,200	+		IAI47_16350	0.87	-2.6
3,468,200	+		IAI47_16350	0.87	-2.8
3,468,200	+		IAI47_16350	0.87	-1.8
3,468,201	-		IAI47_16350	0.87	-2.6
3,468,201	-		IAI47_16350	0.87	-2.5
3,468,231	-		IAI47_16350	0.90	-3.1
3,468,342	+				-2.1
3,468,369	+				-4.1
3,468,369	+				-3.9
3,468,370	-				+0.4
3,468,370	-				-0.5
3,468,397	+				+0.4
3,468,397	+				-2.4
3,468,397	+				+0.3
3,468,397	+				-0.5
3,468,397	+				+0.1
3,468,397	+				-1.3
3,468,397	+				+0.7
3,468,397	+				-1.6
3,468,397	+				-1.1
3,468,397	+				-1.1
3,468,397	+				+0.7
3,468,397	+				-1.0
3,468,398	-				-0.2
3,468,398	-				-0.6
3,468,398	-				-0.8
3,468,398	-				-0.8
3,468,398	-				-0.6
3,468,398	-				-1.6
3,468,398	-				-1.3
3,468,398	-				-0.2
3,468,421	+				-0.3
3,468,421	+				-1.3
3,468,421	+				+0.3
3,468,421	+				+0.9
3,468,421	+				-0.3
3,468,422	-				+0.7
3,468,436	+				-1.6
3,468,437	-				+0.7
3,468,437	-				-1.4
3,468,443	+				-0.3
3,468,443	+				-0.9
3,468,443	+				+1.3
3,468,466	+				+0.2
3,468,467	-				+0.8
3,468,587	+		IAI47_16355	0.23	-0.5
3,468,587	+		IAI47_16355	0.23	+1.0
3,468,587	+		IAI47_16355	0.23	+0.1
3,468,587	+		IAI47_16355	0.23	+1.5
3,468,587	+		IAI47_16355	0.23	-0.1
3,468,587	+		IAI47_16355	0.23	+2.3
3,468,587	+		IAI47_16355	0.23	-2.5
3,468,587	+		IAI47_16355	0.23	-0.7
3,468,587	+		IAI47_16355	0.23	-0.3
3,468,587	+		IAI47_16355	0.23	-0.5
3,468,587	+		IAI47_16355	0.23	+0.4
3,468,587	+		IAI47_16355	0.23	-0.0
3,468,587	+		IAI47_16355	0.23	-0.2
3,468,587	+		IAI47_16355	0.23	+1.6
3,468,587	+		IAI47_16355	0.23	+0.3
3,468,587	+		IAI47_16355	0.23	-1.5
3,468,587	+		IAI47_16355	0.23	+1.9
3,468,588	-		IAI47_16355	0.23	+0.9
3,468,588	-		IAI47_16355	0.23	-0.1
3,468,588	-		IAI47_16355	0.23	-0.1
3,468,588	-		IAI47_16355	0.23	-0.2
3,468,588	-		IAI47_16355	0.23	+0.3
3,468,588	-		IAI47_16355	0.23	-1.1
3,468,588	-		IAI47_16355	0.23	-1.1
3,468,588	-		IAI47_16355	0.23	-0.2
3,468,611	+		IAI47_16355	0.27	+0.7
3,468,617	+		IAI47_16355	0.27	-1.0
3,468,617	+		IAI47_16355	0.27	-0.3
3,468,618	-		IAI47_16355	0.28	+0.7
3,468,658	+		IAI47_16355	0.34	+1.4
3,468,658	+		IAI47_16355	0.34	+0.5
3,468,658	+		IAI47_16355	0.34	-1.0
3,468,658	+		IAI47_16355	0.34	+0.3
3,468,659	-		IAI47_16355	0.34	+0.8
3,468,659	-		IAI47_16355	0.34	+0.9
3,468,659	-		IAI47_16355	0.34	-1.3
3,468,671	+		IAI47_16355	0.36	-0.1
3,468,687	-		IAI47_16355	0.38	-0.6
3,468,696	-		IAI47_16355	0.40	-1.2
3,468,696	-		IAI47_16355	0.40	-0.6
3,468,696	-		IAI47_16355	0.40	+0.2
3,468,714	+		IAI47_16355	0.42	-0.3
3,468,714	+		IAI47_16355	0.42	-1.6
3,468,714	+		IAI47_16355	0.42	-0.5
3,468,715	-		IAI47_16355	0.43	+1.1
3,468,715	-		IAI47_16355	0.43	-1.1
3,468,755	+		IAI47_16355	0.49	-0.6
3,468,755	+		IAI47_16355	0.49	+0.0
3,468,756	-		IAI47_16355	0.49	+0.5
3,468,759	-		IAI47_16355	0.49	+2.7
3,468,759	-		IAI47_16355	0.49	+0.2
3,468,804	+		IAI47_16355	0.56	+0.7
3,468,805	-		IAI47_16355	0.56	-0.1
3,468,805	-		IAI47_16355	0.56	+0.4
3,468,879	-		IAI47_16355	0.68	-0.5
3,468,914	+		IAI47_16355	0.73	-0.3
3,468,926	+		IAI47_16355	0.75	+0.2
3,468,926	+		IAI47_16355	0.75	-0.3
3,468,926	+		IAI47_16355	0.75	+0.1
3,468,926	+		IAI47_16355	0.75	-0.8
3,468,926	+		IAI47_16355	0.75	+0.0
3,468,927	-		IAI47_16355	0.75	+1.5
3,468,927	-		IAI47_16355	0.75	+0.9
3,468,927	-		IAI47_16355	0.75	-0.3
3,468,968	+		IAI47_16355	0.81	-0.3
3,468,968	+		IAI47_16355	0.81	-0.7
3,468,968	+		IAI47_16355	0.81	+0.1
3,468,968	+		IAI47_16355	0.81	+0.2
3,468,969	-		IAI47_16355	0.82	-1.3
3,468,969	-		IAI47_16355	0.82	-0.1
3,468,969	-		IAI47_16355	0.82	+0.3
3,469,086	+				-1.9
3,469,086	+				+1.0
3,469,105	-				+0.2
3,469,110	+				+0.6
3,469,111	-				-0.1
3,469,218	+				-1.3
3,469,218	+				-0.1
3,469,219	-				-0.1
3,469,295	+				+0.8
3,469,296	-				-0.3
3,469,296	-				-2.1
3,469,296	-				+0.1
3,469,303	+				-1.3
3,469,304	-				+2.7
3,469,304	-				-1.2