Strain Fitness in Pantoea sp. MT58 around IAI47_15580

Experiment: Ying_sugar7 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep B; time point 1
3,282,553	+				-0.2
3,282,554	-				+0.6
3,282,554	-				-0.9
3,282,554	-				+0.4
3,282,554	-				+0.1
3,282,554	-				+0.5
3,282,554	-				+0.4
3,282,554	-				-0.3
3,282,556	+				+0.7
3,282,557	-				-0.2
3,282,591	-				-1.3
3,282,591	-				-0.2
3,282,638	+		IAI47_15575	0.15	+0.2
3,282,639	-		IAI47_15575	0.15	+0.7
3,282,731	+		IAI47_15575	0.27	+0.3
3,282,731	+		IAI47_15575	0.27	+1.1
3,282,731	+		IAI47_15575	0.27	-0.6
3,282,731	+		IAI47_15575	0.27	+0.7
3,282,732	-		IAI47_15575	0.27	+0.4
3,282,824	+		IAI47_15575	0.38	-0.7
3,282,824	+		IAI47_15575	0.38	+0.7
3,282,824	+		IAI47_15575	0.38	-0.5
3,282,960	+		IAI47_15575	0.55	-0.4
3,282,960	+		IAI47_15575	0.55	+0.3
3,282,961	-		IAI47_15575	0.56	+0.5
3,282,961	-		IAI47_15575	0.56	-0.8
3,282,962	+		IAI47_15575	0.56	+1.1
3,282,962	+		IAI47_15575	0.56	+0.0
3,282,962	+		IAI47_15575	0.56	+0.9
3,282,962	+		IAI47_15575	0.56	+0.4
3,282,962	+		IAI47_15575	0.56	-0.7
3,282,962	+		IAI47_15575	0.56	+0.4
3,282,962	+		IAI47_15575	0.56	+0.1
3,282,962	+		IAI47_15575	0.56	-1.1
3,282,963	-		IAI47_15575	0.56	-0.6
3,282,963	-		IAI47_15575	0.56	+2.5
3,282,963	-		IAI47_15575	0.56	-0.4
3,282,963	-		IAI47_15575	0.56	-0.4
3,282,963	-		IAI47_15575	0.56	-0.7
3,282,963	-		IAI47_15575	0.56	+0.1
3,283,049	+		IAI47_15575	0.67	+1.0
3,283,049	+		IAI47_15575	0.67	-0.9
3,283,049	+		IAI47_15575	0.67	-1.1
3,283,049	+		IAI47_15575	0.67	+0.8
3,283,049	+		IAI47_15575	0.67	+1.1
3,283,049	+		IAI47_15575	0.67	+0.2
3,283,050	-		IAI47_15575	0.67	+0.6
3,283,052	+		IAI47_15575	0.67	-0.2
3,283,052	+		IAI47_15575	0.67	+1.1
3,283,052	+		IAI47_15575	0.67	-0.4
3,283,052	+		IAI47_15575	0.67	-2.8
3,283,052	+		IAI47_15575	0.67	-1.3
3,283,052	+		IAI47_15575	0.67	-0.0
3,283,053	-		IAI47_15575	0.67	-0.4
3,283,053	-		IAI47_15575	0.67	+0.1
3,283,053	-		IAI47_15575	0.67	-0.1
3,283,053	-		IAI47_15575	0.67	+0.4
3,283,053	-		IAI47_15575	0.67	+0.5
3,283,053	-		IAI47_15575	0.67	-0.3
3,283,053	-		IAI47_15575	0.67	+0.4
3,283,053	-		IAI47_15575	0.67	+1.4
3,283,053	-		IAI47_15575	0.67	+0.9
3,283,053	-		IAI47_15575	0.67	-1.7
3,283,053	-		IAI47_15575	0.67	-0.9
3,283,057	+		IAI47_15575	0.68	-0.1
3,283,057	+		IAI47_15575	0.68	+0.7
3,283,057	+		IAI47_15575	0.68	+0.5
3,283,058	-		IAI47_15575	0.68	-0.9
3,283,058	-		IAI47_15575	0.68	+0.1
3,283,147	+		IAI47_15575	0.79	-1.6
3,283,147	+		IAI47_15575	0.79	-0.9
3,283,147	+		IAI47_15575	0.79	+0.7
3,283,148	-		IAI47_15575	0.79	+0.2
3,283,148	-		IAI47_15575	0.79	+0.2
3,283,148	-		IAI47_15575	0.79	+0.9
3,283,148	-		IAI47_15575	0.79	+0.3
3,283,151	+		IAI47_15575	0.79	+0.0
3,283,152	-		IAI47_15575	0.80	-2.1
3,283,152	-		IAI47_15575	0.80	+0.6
3,283,152	-		IAI47_15575	0.80	+0.0
3,283,153	+		IAI47_15575	0.80	+0.3
3,283,153	+		IAI47_15575	0.80	+0.3
3,283,154	-		IAI47_15575	0.80	-0.2
3,283,311	+				-0.1
3,283,311	+				-0.7
3,283,311	+				-0.9
3,283,311	+				+0.1
3,283,312	-				-0.3
3,283,312	-				-0.6
3,283,312	-				-0.4
3,283,312	-				-0.4
3,283,312	-				-0.7
3,283,312	-				-1.7
3,283,312	-				+0.1
3,283,312	-				+0.3
3,283,359	+				+0.4
3,283,381	+				+0.1
3,283,381	+				-0.2
3,283,381	+				+0.8
3,283,381	+				+0.9
3,283,381	+				+1.1
3,283,381	+				+0.4
3,283,381	+				+0.3
3,283,381	+				+0.6
3,283,382	-				+0.1
3,283,382	-				-0.3
3,283,382	-				+0.3
3,283,382	-				-0.9
3,283,382	-				+0.2
3,283,399	-				-0.5
3,283,399	-				+0.1
3,283,416	+				+0.1
3,283,432	+				-0.1
3,283,433	+				+0.7
3,283,433	+				-0.6
3,283,433	+				+1.4
3,283,433	+				-0.1
3,283,433	+				+0.3
3,283,433	+				+0.3
3,283,433	+				+0.6
3,283,433	+				-0.6
3,283,433	+				-0.9
3,283,433	+				+0.4
3,283,433	+				+0.5
3,283,433	+				-1.3
3,283,433	+				+0.3
3,283,433	+				+1.4
3,283,434	-				-0.0
3,283,434	-				+0.1
3,283,434	-				-0.1
3,283,434	-				+0.3
3,283,434	-				+1.3
3,283,434	-				-0.9
3,283,434	-				-0.1
3,283,434	-				-1.5
3,283,434	-				-0.9
3,283,434	-				-1.1
3,283,434	-				+0.3
3,283,434	-				-0.9
3,283,434	-				+1.3
3,283,435	+				+0.3
3,283,435	+				-0.3
3,283,435	+				+1.6
3,283,435	+				-0.9
3,283,435	+				-1.1
3,283,435	+				-0.1
3,283,435	+				+0.2
3,283,435	+				-0.2
3,283,435	+				+0.3
3,283,435	+				+1.3
3,283,435	+				-0.2
3,283,435	+				+0.7
3,283,436	-				-0.2
3,283,436	-				-0.9
3,283,436	-				+0.3
3,283,436	-				-0.3
3,283,436	-				-0.3
3,283,436	-				-0.6
3,283,436	-				-0.5
3,283,436	-				-1.0
3,283,436	-				+1.5
3,283,510	+		IAI47_15580	0.29	-0.0
3,283,510	+		IAI47_15580	0.29	+0.7
3,283,511	-		IAI47_15580	0.30	-0.3
3,283,511	-		IAI47_15580	0.30	+0.7
3,283,511	-		IAI47_15580	0.30	-0.9
3,283,511	-		IAI47_15580	0.30	-0.9
3,283,512	+		IAI47_15580	0.30	-0.8
3,283,513	-		IAI47_15580	0.31	+0.7
3,283,513	-		IAI47_15580	0.31	+0.3
3,283,513	-		IAI47_15580	0.31	+1.7
3,283,532	+		IAI47_15580	0.38	-0.6
3,283,532	+		IAI47_15580	0.38	-0.6
3,283,532	+		IAI47_15580	0.38	+0.5
3,283,532	+		IAI47_15580	0.38	+0.3
3,283,532	+		IAI47_15580	0.38	-0.5
3,283,532	+		IAI47_15580	0.38	+1.0
3,283,532	+		IAI47_15580	0.38	-1.1
3,283,533	-		IAI47_15580	0.38	+1.4
3,283,677	+				-0.4
3,283,677	+				-0.3
3,283,677	+				-0.1
3,283,677	+				-0.3
3,283,677	+				-0.3
3,283,677	+				-0.3
3,283,677	+				-0.6
3,283,678	-				+0.3
3,283,678	-				-0.3
3,283,678	-				+0.3
3,283,678	-				+1.5
3,283,678	-				-0.8
3,283,678	-				-0.9
3,283,685	+				-1.5
3,283,685	+				-0.3
3,283,686	-				-0.9
3,283,686	-				+0.7
3,283,686	-				-2.3
3,283,724	-				+2.7
3,283,724	-				+0.3
3,284,104	+				+0.7
3,284,108	-				+0.7
3,284,114	-				-0.7
3,284,117	-				+0.2
3,284,117	-				-0.6
3,284,229	+				-1.4
3,284,229	+				+0.8
3,284,229	+				+0.9
3,284,230	-				-0.1
3,284,230	-				-0.6