Strain Fitness in Pantoea sp. MT58 around IAI47_07965

Experiment: Ying_sugar7 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep B; time point 1
1,684,427	+		IAI47_07960	0.54	+0.9
1,684,427	+		IAI47_07960	0.54	+1.5
1,684,428	-		IAI47_07960	0.54	-0.7
1,684,428	-		IAI47_07960	0.54	+1.7
1,684,484	+		IAI47_07960	0.57	-1.8
1,684,484	+		IAI47_07960	0.57	-3.5
1,684,485	-		IAI47_07960	0.57	-0.3
1,684,494	-		IAI47_07960	0.58	-0.9
1,684,521	-		IAI47_07960	0.59	-0.2
1,684,521	-		IAI47_07960	0.59	+0.7
1,684,656	-		IAI47_07960	0.67	+1.1
1,684,678	-		IAI47_07960	0.68	+0.5
1,684,680	+		IAI47_07960	0.69	-1.8
1,684,680	+		IAI47_07960	0.69	-0.4
1,684,681	-		IAI47_07960	0.69	-0.3
1,684,690	+		IAI47_07960	0.69	+0.1
1,684,690	+		IAI47_07960	0.69	-1.0
1,684,691	-		IAI47_07960	0.69	-0.3
1,684,691	-		IAI47_07960	0.69	+0.6
1,684,691	-		IAI47_07960	0.69	+0.1
1,684,734	-		IAI47_07960	0.72	+1.4
1,684,777	-		IAI47_07960	0.74	-0.2
1,684,777	-		IAI47_07960	0.74	+0.7
1,684,787	+		IAI47_07960	0.75	-0.1
1,684,795	+		IAI47_07960	0.75	+1.4
1,684,795	+		IAI47_07960	0.75	-0.0
1,684,795	+		IAI47_07960	0.75	-0.9
1,684,795	+		IAI47_07960	0.75	-0.1
1,684,796	-		IAI47_07960	0.75	+1.5
1,684,796	-		IAI47_07960	0.75	+0.2
1,684,796	-		IAI47_07960	0.75	+0.1
1,684,796	-		IAI47_07960	0.75	-0.1
1,684,796	-		IAI47_07960	0.75	+0.5
1,684,796	-		IAI47_07960	0.75	-0.3
1,684,854	+		IAI47_07960	0.79	-0.2
1,684,854	+		IAI47_07960	0.79	+0.6
1,684,855	-		IAI47_07960	0.79	+0.1
1,684,866	-		IAI47_07960	0.79	-0.1
1,684,866	-		IAI47_07960	0.79	-0.5
1,684,866	-		IAI47_07960	0.79	+0.4
1,684,867	+		IAI47_07960	0.79	-1.5
1,684,867	+		IAI47_07960	0.79	+1.7
1,684,867	+		IAI47_07960	0.79	+1.2
1,684,867	+		IAI47_07960	0.79	-0.4
1,684,868	-		IAI47_07960	0.80	+0.8
1,684,868	-		IAI47_07960	0.80	-0.2
1,684,868	-		IAI47_07960	0.80	-0.2
1,684,868	-		IAI47_07960	0.80	-0.8
1,684,868	-		IAI47_07960	0.80	-0.0
1,684,868	-		IAI47_07960	0.80	-0.3
1,684,920	-		IAI47_07960	0.83	-0.7
1,684,949	+		IAI47_07960	0.84	-1.5
1,684,949	+		IAI47_07960	0.84	-0.5
1,684,949	+		IAI47_07960	0.84	+0.2
1,684,973	+		IAI47_07960	0.86	-0.3
1,684,973	+		IAI47_07960	0.86	-0.6
1,684,974	-		IAI47_07960	0.86	-0.3
1,684,974	-		IAI47_07960	0.86	-0.1
1,684,974	-		IAI47_07960	0.86	+1.0
1,685,012	+		IAI47_07960	0.88	+0.2
1,685,013	-		IAI47_07960	0.88	+0.4
1,685,013	-		IAI47_07960	0.88	+1.1
1,685,024	+		IAI47_07960	0.89	+0.2
1,685,024	+		IAI47_07960	0.89	-0.8
1,685,025	-		IAI47_07960	0.89	+1.2
1,685,025	-		IAI47_07960	0.89	+0.9
1,685,071	-				-0.2
1,685,071	-				-0.2
1,685,142	-				-2.0
1,685,198	+				-0.5
1,685,198	+				+0.3
1,685,198	+				+0.2
1,685,198	+				-0.2
1,685,198	+				+0.1
1,685,198	+				+0.2
1,685,198	+				-0.7
1,685,199	-				-0.9
1,685,199	-				-0.3
1,685,199	-				-0.7
1,685,199	-				-0.3
1,685,202	+				+0.1
1,685,202	+				+1.0
1,685,202	+				+0.2
1,685,203	-				+0.0
1,685,203	-				+0.8
1,685,216	+				+1.1
1,685,242	+				-1.2
1,685,242	+				+1.0
1,685,242	+				-0.9
1,685,243	-				+0.0
1,685,243	-				+1.1
1,685,243	-				+0.0
1,685,244	+				-0.3
1,685,244	+				-1.0
1,685,244	+				-0.5
1,685,244	+				+1.5
1,685,245	-				+0.1
1,685,245	-				-0.1
1,685,245	-				+1.0
1,685,245	-				-1.7
1,685,251	+				+1.2
1,685,251	+				+0.1
1,685,251	+				+0.7
1,685,251	+				+1.2
1,685,251	+				+0.9
1,685,252	-				+0.3
1,685,252	-				+0.2
1,685,252	-				-0.9
1,685,252	-				-0.8
1,685,284	+				+0.4
1,685,331	+				-0.8
1,685,378	+				-1.2
1,685,429	+		IAI47_07965	0.11	-1.2
1,685,429	+		IAI47_07965	0.11	-2.0
1,685,430	-		IAI47_07965	0.11	+0.7
1,685,519	+		IAI47_07965	0.25	-0.2
1,685,519	+		IAI47_07965	0.25	-2.3
1,685,520	-		IAI47_07965	0.25	-0.8
1,685,520	-		IAI47_07965	0.25	-1.7
1,685,520	-		IAI47_07965	0.25	-0.9
1,685,520	-		IAI47_07965	0.25	-0.9
1,685,520	-		IAI47_07965	0.25	-0.8
1,685,618	+		IAI47_07965	0.41	+0.4
1,685,636	-		IAI47_07965	0.44	-0.9
1,685,687	+		IAI47_07965	0.52	-0.1
1,685,687	+		IAI47_07965	0.52	-2.4
1,685,699	+		IAI47_07965	0.54	-1.1
1,685,707	+		IAI47_07965	0.55	-0.2
1,685,750	+		IAI47_07965	0.62	-0.5
1,685,936	+				+0.2
1,685,937	-				-0.3
1,685,937	-				-1.8
1,685,939	-				+0.5
1,685,962	+				-0.3
1,685,978	+				+0.6
1,685,982	-				-0.2
1,685,984	+				+0.4
1,685,984	+				+0.1
1,685,994	-				-1.2
1,685,996	+				-1.1
1,686,040	+				-1.3
1,686,041	-				+0.7
1,686,068	+				-0.5
1,686,069	-				-0.0
1,686,069	-				-1.7
1,686,069	-				-0.9
1,686,073	-				-0.8
1,686,079	+				-0.2
1,686,080	-				+0.7
1,686,117	+				-0.4
1,686,222	-				+0.0
1,686,222	-				+0.3
1,686,243	+				+0.1
1,686,244	-				-1.3
1,686,244	-				-1.2
1,686,244	-				-0.5
1,686,277	-				-0.9
1,686,391	-				-0.3
1,686,395	-				-0.8
1,686,395	-				-0.1
1,686,479	-				-1.1
1,686,512	-				-0.3
1,686,512	-				+0.9
1,686,580	+				+0.7
1,686,580	+				+0.7
1,686,580	+				+1.4
1,686,580	+				+0.7
1,686,580	+				-0.6
1,686,580	+				-1.1
1,686,580	+				+1.0
1,686,580	+				+1.0
1,686,580	+				-0.5
1,686,581	-				-0.2
1,686,581	-				-0.0
1,686,581	-				+0.5
1,686,581	-				-0.3
1,686,581	-				+1.4
1,686,581	-				-0.3
1,686,581	-				+0.2
1,686,581	-				+1.0
1,686,581	-				-0.0
1,686,581	-				+0.4
1,686,600	+				-0.3
1,686,600	+				+1.3
1,686,600	+				-0.3
1,686,601	-				+0.3
1,686,604	+				+0.9
1,686,605	-				-0.8
1,686,612	+				-1.5
1,686,613	-				+1.0
1,686,630	+				+0.4
1,686,654	+				+0.8
1,686,723	+		IAI47_07970	0.13	+0.3
1,686,738	+		IAI47_07970	0.15	+1.8
1,686,738	+		IAI47_07970	0.15	+1.8
1,686,739	-		IAI47_07970	0.15	+1.3
1,686,739	-		IAI47_07970	0.15	+1.7
1,686,739	-		IAI47_07970	0.15	-1.7
1,686,743	+		IAI47_07970	0.16	+0.2
1,686,743	+		IAI47_07970	0.16	+2.7
1,686,743	+		IAI47_07970	0.16	+0.7
1,686,743	+		IAI47_07970	0.16	+1.1
1,686,743	+		IAI47_07970	0.16	+0.7
1,686,743	+		IAI47_07970	0.16	+0.7
1,686,744	-		IAI47_07970	0.16	+0.6
1,686,744	-		IAI47_07970	0.16	+1.0
1,686,744	-		IAI47_07970	0.16	+0.8
1,686,744	-		IAI47_07970	0.16	+1.0
1,686,744	-		IAI47_07970	0.16	-0.2
1,686,744	-		IAI47_07970	0.16	-0.3
1,686,746	+		IAI47_07970	0.16	+0.5
1,686,746	+		IAI47_07970	0.16	+1.8
1,686,747	-		IAI47_07970	0.16	-0.8
1,686,747	-		IAI47_07970	0.16	+0.1
1,686,771	+		IAI47_07970	0.19	+0.9
1,686,771	+		IAI47_07970	0.19	+2.4
1,686,771	+		IAI47_07970	0.19	+0.9
1,686,772	-		IAI47_07970	0.20	+1.4
1,686,772	-		IAI47_07970	0.20	+0.8
1,686,772	-		IAI47_07970	0.20	-0.7
1,686,772	-		IAI47_07970	0.20	+0.7
1,686,792	+		IAI47_07970	0.22	+1.7
1,686,805	-		IAI47_07970	0.24	+0.4
1,686,813	+		IAI47_07970	0.25	+0.9
1,686,814	-		IAI47_07970	0.25	+2.2
1,686,814	-		IAI47_07970	0.25	-0.1
1,686,823	-		IAI47_07970	0.26	+0.4
1,686,846	+		IAI47_07970	0.29	+1.3
1,686,870	+		IAI47_07970	0.32	+1.8
1,686,912	+		IAI47_07970	0.37	+2.2
1,686,913	-		IAI47_07970	0.38	+1.7
1,686,913	-		IAI47_07970	0.38	+1.6
1,686,951	+		IAI47_07970	0.42	+2.5
1,686,952	-		IAI47_07970	0.42	+0.0