Strain Fitness in Pantoea sp. MT58 around IAI47_06160

Experiment: Ying_sugar7 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep B; time point 1
1,252,330	+				+2.4
1,252,331	-				-2.9
1,252,467	-		IAI47_06155	0.13	+0.3
1,252,467	-		IAI47_06155	0.13	+0.0
1,252,490	+		IAI47_06155	0.16	-0.2
1,252,490	+		IAI47_06155	0.16	+0.6
1,252,490	+		IAI47_06155	0.16	+0.2
1,252,491	-		IAI47_06155	0.16	-0.3
1,252,491	-		IAI47_06155	0.16	-0.4
1,252,491	-		IAI47_06155	0.16	-1.1
1,252,491	-		IAI47_06155	0.16	+0.4
1,252,491	-		IAI47_06155	0.16	+0.7
1,252,491	-		IAI47_06155	0.16	-0.0
1,252,530	+		IAI47_06155	0.21	+0.8
1,252,530	+		IAI47_06155	0.21	-0.6
1,252,530	+		IAI47_06155	0.21	-0.1
1,252,530	+		IAI47_06155	0.21	-2.5
1,252,531	-		IAI47_06155	0.21	-0.2
1,252,531	-		IAI47_06155	0.21	-1.4
1,252,531	-		IAI47_06155	0.21	-0.7
1,252,531	-		IAI47_06155	0.21	+0.0
1,252,561	-		IAI47_06155	0.24	-0.3
1,252,589	+		IAI47_06155	0.28	-2.9
1,252,590	-		IAI47_06155	0.28	-0.1
1,252,616	+		IAI47_06155	0.31	+1.3
1,252,616	+		IAI47_06155	0.31	-0.1
1,252,616	+		IAI47_06155	0.31	-0.1
1,252,617	-		IAI47_06155	0.31	+0.6
1,252,714	+		IAI47_06155	0.43	+0.2
1,252,714	+		IAI47_06155	0.43	-0.5
1,252,714	+		IAI47_06155	0.43	-0.5
1,252,714	+		IAI47_06155	0.43	-2.2
1,252,714	+		IAI47_06155	0.43	+1.2
1,252,714	+		IAI47_06155	0.43	+0.1
1,252,714	+		IAI47_06155	0.43	-0.3
1,252,715	-		IAI47_06155	0.43	+0.5
1,252,715	-		IAI47_06155	0.43	+0.9
1,252,715	-		IAI47_06155	0.43	+0.1
1,252,715	-		IAI47_06155	0.43	+0.9
1,252,715	-		IAI47_06155	0.43	+0.6
1,252,715	-		IAI47_06155	0.43	-1.2
1,252,715	-		IAI47_06155	0.43	+0.3
1,252,715	-		IAI47_06155	0.43	-0.1
1,252,715	-		IAI47_06155	0.43	-1.4
1,252,718	+		IAI47_06155	0.44	+0.4
1,252,718	+		IAI47_06155	0.44	-0.1
1,252,718	+		IAI47_06155	0.44	-1.0
1,252,718	+		IAI47_06155	0.44	-0.4
1,252,719	-		IAI47_06155	0.44	-0.0
1,252,719	-		IAI47_06155	0.44	+0.2
1,252,719	-		IAI47_06155	0.44	+0.5
1,252,719	-		IAI47_06155	0.44	-0.1
1,252,719	-		IAI47_06155	0.44	-1.0
1,252,719	-		IAI47_06155	0.44	-1.7
1,252,851	-		IAI47_06155	0.60	+0.7
1,252,931	+		IAI47_06155	0.69	-0.0
1,252,952	+		IAI47_06155	0.72	-0.9
1,252,952	+		IAI47_06155	0.72	+0.3
1,252,953	-		IAI47_06155	0.72	+0.0
1,252,953	-		IAI47_06155	0.72	-1.1
1,252,953	-		IAI47_06155	0.72	-0.3
1,252,985	+		IAI47_06155	0.76	+1.0
1,252,985	+		IAI47_06155	0.76	+0.1
1,252,985	+		IAI47_06155	0.76	-0.7
1,252,985	+		IAI47_06155	0.76	+0.6
1,252,985	+		IAI47_06155	0.76	+2.3
1,252,986	-		IAI47_06155	0.76	+0.0
1,252,986	-		IAI47_06155	0.76	-0.1
1,252,986	-		IAI47_06155	0.76	-0.3
1,252,986	-		IAI47_06155	0.76	-0.1
1,252,986	-		IAI47_06155	0.76	-0.2
1,252,986	-		IAI47_06155	0.76	-1.0
1,253,168	+				-1.5
1,253,176	+				-0.6
1,253,176	+				+0.3
1,253,176	+				-0.4
1,253,177	-				+1.9
1,253,177	-				+0.5
1,253,177	-				+0.3
1,253,181	+				-0.1
1,253,181	+				-0.3
1,253,181	+				-0.4
1,253,261	-				-1.1
1,253,289	+		IAI47_06160	0.12	+1.6
1,253,289	+		IAI47_06160	0.12	+0.0
1,253,289	+		IAI47_06160	0.12	+0.4
1,253,289	+		IAI47_06160	0.12	+0.4
1,253,289	+		IAI47_06160	0.12	-0.4
1,253,290	-		IAI47_06160	0.12	-0.5
1,253,290	-		IAI47_06160	0.12	-0.7
1,253,290	-		IAI47_06160	0.12	+1.1
1,253,293	+		IAI47_06160	0.13	+0.1
1,253,293	+		IAI47_06160	0.13	-1.2
1,253,293	+		IAI47_06160	0.13	-0.1
1,253,293	+		IAI47_06160	0.13	+0.1
1,253,294	-		IAI47_06160	0.13	-0.6
1,253,294	-		IAI47_06160	0.13	-1.0
1,253,294	-		IAI47_06160	0.13	-0.5
1,253,294	-		IAI47_06160	0.13	+2.2
1,253,294	-		IAI47_06160	0.13	-0.3
1,253,294	-		IAI47_06160	0.13	-0.5
1,253,299	-		IAI47_06160	0.13	-2.0
1,253,299	-		IAI47_06160	0.13	+0.1
1,253,351	-		IAI47_06160	0.20	-0.5
1,253,373	-		IAI47_06160	0.23	-1.6
1,253,373	-		IAI47_06160	0.23	+1.2
1,253,390	+		IAI47_06160	0.25	-0.6
1,253,390	+		IAI47_06160	0.25	+0.2
1,253,391	-		IAI47_06160	0.25	-0.9
1,253,391	-		IAI47_06160	0.25	+0.1
1,253,475	+		IAI47_06160	0.35	-0.0
1,253,476	-		IAI47_06160	0.35	+2.8
1,253,609	+		IAI47_06160	0.52	-0.8
1,253,610	-		IAI47_06160	0.52	+0.9
1,253,610	-		IAI47_06160	0.52	-0.4
1,253,634	+		IAI47_06160	0.55	-1.4
1,253,635	-		IAI47_06160	0.55	+1.6
1,253,642	+		IAI47_06160	0.56	+0.3
1,253,642	+		IAI47_06160	0.56	-0.2
1,253,643	-		IAI47_06160	0.56	-0.0
1,253,678	+		IAI47_06160	0.60	-1.8
1,253,678	+		IAI47_06160	0.60	-1.1
1,253,678	+		IAI47_06160	0.60	-0.1
1,253,679	-		IAI47_06160	0.61	-1.7
1,253,708	+		IAI47_06160	0.64	-0.4
1,253,709	-		IAI47_06160	0.64	-0.6
1,253,746	+		IAI47_06160	0.69	-0.8
1,253,747	-		IAI47_06160	0.69	-0.4
1,253,747	-		IAI47_06160	0.69	-2.2
1,253,782	+		IAI47_06160	0.73	-0.3
1,253,782	+		IAI47_06160	0.73	+0.4
1,253,782	+		IAI47_06160	0.73	-1.0
1,253,783	-		IAI47_06160	0.74	-1.0
1,253,783	-		IAI47_06160	0.74	-0.2
1,253,821	+		IAI47_06160	0.78	+0.1
1,253,821	+		IAI47_06160	0.78	-0.1
1,253,821	+		IAI47_06160	0.78	+0.0
1,253,932	+				-0.5
1,253,932	+				-1.4
1,253,932	+				-0.2
1,253,932	+				-0.1
1,253,933	-				+0.6
1,253,933	-				-0.0
1,253,933	-				+0.6
1,253,933	-				+0.6
1,253,937	+				-0.4
1,253,938	-				-0.3
1,253,993	+				-0.6
1,254,002	-				+0.8
1,254,002	-				-0.0
1,254,009	-				+0.6
1,254,033	+				+0.9
1,254,033	+				-0.4
1,254,033	+				+1.2
1,254,033	+				+1.4
1,254,034	-				+0.4
1,254,034	-				-0.7
1,254,034	-				-1.0
1,254,034	-				+1.1
1,254,091	+		IAI47_06165	0.14	+0.8
1,254,095	+		IAI47_06165	0.15	-0.4
1,254,095	+		IAI47_06165	0.15	+0.4
1,254,095	+		IAI47_06165	0.15	+0.8
1,254,096	-		IAI47_06165	0.15	+0.0
1,254,096	-		IAI47_06165	0.15	-0.7
1,254,096	-		IAI47_06165	0.15	+0.1
1,254,117	+		IAI47_06165	0.19	-2.4
1,254,117	+		IAI47_06165	0.19	-1.0
1,254,117	+		IAI47_06165	0.19	-0.8
1,254,118	-		IAI47_06165	0.19	+1.2
1,254,118	-		IAI47_06165	0.19	+0.3
1,254,118	-		IAI47_06165	0.19	-2.2
1,254,174	+		IAI47_06165	0.29	+0.5
1,254,174	+		IAI47_06165	0.29	+0.2
1,254,174	+		IAI47_06165	0.29	-1.1
1,254,174	+		IAI47_06165	0.29	+3.2
1,254,174	+		IAI47_06165	0.29	+0.6
1,254,175	-		IAI47_06165	0.29	+0.3
1,254,250	-		IAI47_06165	0.43	+0.2
1,254,255	+		IAI47_06165	0.44	+0.2
1,254,256	-		IAI47_06165	0.44	+0.0
1,254,342	-		IAI47_06165	0.60	+0.6
1,254,422	+		IAI47_06165	0.75	+0.4
1,254,422	+		IAI47_06165	0.75	+0.2
1,254,422	+		IAI47_06165	0.75	-0.4
1,254,423	-		IAI47_06165	0.75	-0.6
1,254,447	+		IAI47_06165	0.79	-0.3
1,254,447	+		IAI47_06165	0.79	+1.3
1,254,447	+		IAI47_06165	0.79	+0.9
1,254,448	-		IAI47_06165	0.79	-0.5
1,254,485	+		IAI47_06165	0.86	+0.7
1,254,508	-				+0.0
1,254,523	+				-0.6
1,254,574	+				-0.7
1,254,574	+				-1.3
1,254,575	-				+1.4
1,254,575	-				-0.6
1,254,575	-				+1.6
1,254,576	+				+1.1
1,254,576	+				+0.8
1,254,576	+				+0.1
1,254,576	+				-0.1
1,254,576	+				+0.1
1,254,576	+				-1.7
1,254,577	-				-0.4
1,254,577	-				-0.6
1,254,577	-				+0.9
1,254,577	-				+0.4
1,254,577	-				+0.1
1,254,580	+				+1.5
1,254,580	+				+0.8
1,254,581	-				-0.4
1,254,589	+				+2.2
1,254,589	+				+0.2
1,254,589	+				-1.4
1,254,590	-				-1.8
1,254,590	-				+0.0
1,254,616	+				+0.4
1,254,736	+		IAI47_06170	0.50	-0.9
1,254,737	-		IAI47_06170	0.51	+1.6
1,254,737	-		IAI47_06170	0.51	-1.6
1,254,737	-		IAI47_06170	0.51	-0.8
1,254,737	-		IAI47_06170	0.51	+0.0
1,254,822	+		IAI47_06170	0.80	+2.0
1,254,823	-		IAI47_06170	0.81	-0.1
1,254,823	-		IAI47_06170	0.81	+1.3
1,254,823	-		IAI47_06170	0.81	-0.8
1,254,903	-				-3.0
1,254,935	+				-0.1
1,254,935	+				+0.0
1,254,958	+				-1.4
1,254,958	+				-1.4
1,254,980	-				+0.2