Strain Fitness in Pantoea sp. MT58 around IAI47_05395

Experiment: Ying_sugar7 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep B; time point 1
1,141,089	+		IAI47_05385	0.83	+0.6
1,141,089	+		IAI47_05385	0.83	-2.4
1,141,089	+		IAI47_05385	0.83	-1.4
1,141,089	+		IAI47_05385	0.83	-2.7
1,141,089	+		IAI47_05385	0.83	+0.0
1,141,090	-		IAI47_05385	0.84	-0.1
1,141,090	-		IAI47_05385	0.84	-0.8
1,141,090	-		IAI47_05385	0.84	-1.2
1,141,090	-		IAI47_05385	0.84	-0.4
1,141,090	-		IAI47_05385	0.84	-2.0
1,141,092	+		IAI47_05385	0.84	-0.2
1,141,092	+		IAI47_05385	0.84	+0.3
1,141,093	-		IAI47_05385	0.84	-0.5
1,141,093	-		IAI47_05385	0.84	-1.1
1,141,093	-		IAI47_05385	0.84	-1.5
1,141,103	+		IAI47_05385	0.85	-0.4
1,141,104	-		IAI47_05385	0.85	+0.2
1,141,192	+				-0.6
1,141,193	-				-1.9
1,141,193	-				-1.0
1,141,273	+				-3.2
1,141,274	-				+0.0
1,141,274	-				-1.3
1,141,281	+				-1.2
1,141,281	+				-2.0
1,141,282	-				-1.4
1,141,324	+				-1.6
1,141,324	+				-1.0
1,141,325	-				-2.0
1,141,325	-				-2.0
1,141,395	-		IAI47_05390	0.17	+0.6
1,141,412	-		IAI47_05390	0.19	-1.1
1,141,433	+		IAI47_05390	0.21	-2.4
1,141,433	+		IAI47_05390	0.21	-1.7
1,141,433	+		IAI47_05390	0.21	-0.4
1,141,434	-		IAI47_05390	0.21	-2.1
1,141,435	+		IAI47_05390	0.21	-0.4
1,141,435	+		IAI47_05390	0.21	-1.9
1,141,436	-		IAI47_05390	0.22	+0.6
1,141,436	-		IAI47_05390	0.22	-1.7
1,141,436	-		IAI47_05390	0.22	+0.6
1,141,474	+		IAI47_05390	0.26	-0.4
1,141,475	-		IAI47_05390	0.26	-1.7
1,141,475	-		IAI47_05390	0.26	-1.0
1,141,576	+		IAI47_05390	0.38	-2.7
1,141,668	-		IAI47_05390	0.49	-1.6
1,141,702	+		IAI47_05390	0.53	-0.3
1,141,722	+		IAI47_05390	0.56	-1.8
1,141,723	-		IAI47_05390	0.56	-2.2
1,141,732	-		IAI47_05390	0.57	-0.4
1,141,763	+		IAI47_05390	0.61	-2.0
1,141,764	-		IAI47_05390	0.61	-1.4
1,141,764	-		IAI47_05390	0.61	-1.9
1,141,764	-		IAI47_05390	0.61	-0.8
1,141,833	+		IAI47_05390	0.69	-1.5
1,141,833	+		IAI47_05390	0.69	-0.4
1,141,833	+		IAI47_05390	0.69	-0.6
1,141,833	+		IAI47_05390	0.69	-2.3
1,141,980	-		IAI47_05390	0.87	-0.8
1,142,044	+				-0.2
1,142,044	+				-0.6
1,142,053	-				-0.4
1,142,053	-				-2.4
1,142,053	-				-0.8
1,142,053	-				-1.1
1,142,087	+				+0.0
1,142,088	-				-1.4
1,142,160	+				+0.1
1,142,160	+				-0.7
1,142,160	+				-2.4
1,142,161	-				-0.9
1,142,168	+				-2.0
1,142,283	+		IAI47_05395	0.22	+0.6
1,142,283	+		IAI47_05395	0.22	-1.1
1,142,284	-		IAI47_05395	0.22	-2.2
1,142,284	-		IAI47_05395	0.22	-1.5
1,142,313	+		IAI47_05395	0.26	-1.6
1,142,325	+		IAI47_05395	0.27	-0.4
1,142,370	+		IAI47_05395	0.32	-2.7
1,142,370	+		IAI47_05395	0.32	-2.2
1,142,449	+		IAI47_05395	0.41	-2.4
1,142,450	-		IAI47_05395	0.41	-1.1
1,142,502	+		IAI47_05395	0.47	-2.8
1,142,502	+		IAI47_05395	0.47	+1.2
1,142,502	+		IAI47_05395	0.47	-1.9
1,142,502	+		IAI47_05395	0.47	-1.9
1,142,502	+		IAI47_05395	0.47	-1.0
1,142,502	+		IAI47_05395	0.47	-2.4
1,142,502	+		IAI47_05395	0.47	-3.3
1,142,503	-		IAI47_05395	0.47	-1.9
1,142,514	+		IAI47_05395	0.49	-0.5
1,142,514	+		IAI47_05395	0.49	-1.2
1,142,514	+		IAI47_05395	0.49	-2.0
1,142,515	+		IAI47_05395	0.49	-1.1
1,142,515	-		IAI47_05395	0.49	-2.4
1,142,515	-		IAI47_05395	0.49	-1.0
1,142,515	-		IAI47_05395	0.49	-2.9
1,142,515	-		IAI47_05395	0.49	-1.9
1,142,515	-		IAI47_05395	0.49	-1.6
1,142,533	-		IAI47_05395	0.51	-1.7
1,142,636	+		IAI47_05395	0.62	-0.7
1,142,637	-		IAI47_05395	0.63	-0.9
1,142,684	+		IAI47_05395	0.68	-0.1
1,142,684	+		IAI47_05395	0.68	-2.0
1,142,684	+		IAI47_05395	0.68	-1.6
1,142,684	+		IAI47_05395	0.68	-2.2
1,142,684	+		IAI47_05395	0.68	-0.7
1,142,684	+		IAI47_05395	0.68	-0.7
1,142,684	+		IAI47_05395	0.68	-2.0
1,142,684	+		IAI47_05395	0.68	-1.3
1,142,684	+		IAI47_05395	0.68	+0.1
1,142,685	-		IAI47_05395	0.68	+0.0
1,142,685	-		IAI47_05395	0.68	-1.5
1,142,685	-		IAI47_05395	0.68	-1.3
1,142,685	-		IAI47_05395	0.68	-1.7
1,142,685	-		IAI47_05395	0.68	-2.1
1,142,685	-		IAI47_05395	0.68	-2.0
1,142,685	-		IAI47_05395	0.68	-2.9
1,142,685	-		IAI47_05395	0.68	+0.1
1,142,701	+		IAI47_05395	0.70	-3.0
1,142,701	+		IAI47_05395	0.70	-2.0
1,142,702	-		IAI47_05395	0.70	+0.0
1,142,785	+		IAI47_05395	0.79	-1.4
1,142,785	+		IAI47_05395	0.79	-2.9
1,142,785	+		IAI47_05395	0.79	-1.9
1,142,785	+		IAI47_05395	0.79	-0.6
1,142,786	-		IAI47_05395	0.80	+0.6
1,142,786	-		IAI47_05395	0.80	-1.7
1,142,786	-		IAI47_05395	0.80	-1.4
1,142,786	-		IAI47_05395	0.80	-0.9
1,142,786	-		IAI47_05395	0.80	-3.3
1,142,786	-		IAI47_05395	0.80	-2.6
1,142,786	-		IAI47_05395	0.80	-0.8
1,142,787	+		IAI47_05395	0.80	-0.9
1,142,787	+		IAI47_05395	0.80	-2.0
1,142,787	+		IAI47_05395	0.80	-1.4
1,142,787	+		IAI47_05395	0.80	+0.6
1,142,787	+		IAI47_05395	0.80	-1.6
1,142,787	+		IAI47_05395	0.80	-1.6
1,142,787	+		IAI47_05395	0.80	-1.4
1,142,787	+		IAI47_05395	0.80	-4.0
1,142,787	+		IAI47_05395	0.80	-1.7
1,142,787	+		IAI47_05395	0.80	+0.4
1,142,787	+		IAI47_05395	0.80	+1.0
1,142,788	-		IAI47_05395	0.80	-0.1
1,142,788	-		IAI47_05395	0.80	-0.1
1,142,788	-		IAI47_05395	0.80	+0.0
1,142,788	-		IAI47_05395	0.80	-2.6
1,142,788	-		IAI47_05395	0.80	-2.2
1,142,788	-		IAI47_05395	0.80	-0.4
1,142,810	+		IAI47_05395	0.82	-2.1
1,142,810	+		IAI47_05395	0.82	+0.4
1,142,811	-		IAI47_05395	0.82	-1.3
1,142,811	-		IAI47_05395	0.82	-1.5
1,142,811	-		IAI47_05395	0.82	-3.3
1,142,824	+		IAI47_05395	0.84	-0.7
1,142,824	+		IAI47_05395	0.84	-1.4
1,142,824	+		IAI47_05395	0.84	+0.6
1,142,824	+		IAI47_05395	0.84	+0.3
1,142,825	-		IAI47_05395	0.84	-0.1
1,142,825	-		IAI47_05395	0.84	-3.0
1,142,825	-		IAI47_05395	0.84	-3.1
1,142,825	-		IAI47_05395	0.84	-1.4
1,142,915	+				-0.4
1,142,968	+				-1.3
1,143,013	+				-0.4
1,143,013	+				-2.0
1,143,013	+				-1.4
1,143,014	-				-1.7
1,143,014	-				-2.4
1,143,014	-				-0.4
1,143,091	+		IAI47_05400	0.13	-0.1
1,143,091	+		IAI47_05400	0.13	-1.7
1,143,092	-		IAI47_05400	0.13	-1.3
1,143,092	-		IAI47_05400	0.13	-1.1
1,143,092	-		IAI47_05400	0.13	-1.1
1,143,092	-		IAI47_05400	0.13	-2.2
1,143,092	-		IAI47_05400	0.13	-1.4
1,143,094	+		IAI47_05400	0.13	-1.6
1,143,095	-		IAI47_05400	0.13	-0.4
1,143,146	+		IAI47_05400	0.18	-1.2
1,143,200	+		IAI47_05400	0.23	-2.2
1,143,201	-		IAI47_05400	0.23	-0.4
1,143,217	+		IAI47_05400	0.24	-0.4
1,143,218	-		IAI47_05400	0.24	-1.3
1,143,218	-		IAI47_05400	0.24	-2.4
1,143,218	-		IAI47_05400	0.24	-1.0
1,143,465	+		IAI47_05400	0.47	-0.2
1,143,466	-		IAI47_05400	0.47	-1.9
1,143,466	-		IAI47_05400	0.47	-0.8
1,143,469	+		IAI47_05400	0.47	-2.0
1,143,469	+		IAI47_05400	0.47	-3.3
1,143,469	+		IAI47_05400	0.47	-0.7
1,143,469	+		IAI47_05400	0.47	+0.0
1,143,469	+		IAI47_05400	0.47	-2.6
1,143,469	+		IAI47_05400	0.47	-0.9
1,143,470	-		IAI47_05400	0.47	-2.2
1,143,470	-		IAI47_05400	0.47	-1.6
1,143,470	-		IAI47_05400	0.47	-1.0
1,143,512	-		IAI47_05400	0.51	-2.0
1,143,512	-		IAI47_05400	0.51	-2.6
1,143,536	+		IAI47_05400	0.53	-2.0
1,143,740	+		IAI47_05400	0.72	-0.1
1,143,740	+		IAI47_05400	0.72	-2.7
1,143,740	+		IAI47_05400	0.72	-2.4
1,143,740	+		IAI47_05400	0.72	+0.2
1,143,742	+		IAI47_05400	0.72	-2.6
1,143,742	+		IAI47_05400	0.72	-1.5
1,143,742	+		IAI47_05400	0.72	-1.1
1,143,743	-		IAI47_05400	0.72	-2.4
1,143,743	-		IAI47_05400	0.72	-0.8