Experiment: Ying_sugar7 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_04360 and IAI47_04365 are separated by 15 nucleotides IAI47_04365 and IAI47_04370 are separated by 166 nucleotides
IAI47_04360: IAI47_04360 - HlyC/CorC family transporter, at 915,134 to 916,420
_04360
IAI47_04365: IAI47_04365 - inner membrane protein YpjD, at 916,436 to 917,236
_04365
IAI47_04370: IAI47_04370 - signal recognition particle protein, at 917,403 to 918,764
_04370
Position (kb) 916
917
918 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 915.468 kb on - strand, within IAI47_04360 at 915.468 kb on - strand, within IAI47_04360 at 915.495 kb on + strand, within IAI47_04360 at 915.496 kb on - strand, within IAI47_04360 at 915.496 kb on - strand, within IAI47_04360 at 915.496 kb on - strand, within IAI47_04360 at 915.496 kb on - strand, within IAI47_04360 at 915.499 kb on + strand, within IAI47_04360 at 915.579 kb on + strand, within IAI47_04360 at 915.579 kb on + strand, within IAI47_04360 at 915.580 kb on - strand, within IAI47_04360 at 915.580 kb on - strand, within IAI47_04360 at 915.580 kb on - strand, within IAI47_04360 at 915.580 kb on - strand, within IAI47_04360 at 915.580 kb on - strand, within IAI47_04360 at 915.582 kb on + strand, within IAI47_04360 at 915.582 kb on + strand, within IAI47_04360 at 915.582 kb on + strand, within IAI47_04360 at 915.583 kb on - strand, within IAI47_04360 at 915.583 kb on - strand, within IAI47_04360 at 915.583 kb on - strand, within IAI47_04360 at 915.731 kb on + strand, within IAI47_04360 at 915.731 kb on + strand, within IAI47_04360 at 915.731 kb on + strand, within IAI47_04360 at 915.732 kb on - strand, within IAI47_04360 at 915.732 kb on - strand, within IAI47_04360 at 915.732 kb on - strand, within IAI47_04360 at 915.773 kb on - strand, within IAI47_04360 at 915.773 kb on - strand, within IAI47_04360 at 915.773 kb on - strand, within IAI47_04360 at 915.773 kb on - strand, within IAI47_04360 at 915.773 kb on - strand, within IAI47_04360 at 915.799 kb on + strand, within IAI47_04360 at 915.799 kb on + strand, within IAI47_04360 at 915.799 kb on + strand, within IAI47_04360 at 915.799 kb on + strand, within IAI47_04360 at 915.799 kb on + strand, within IAI47_04360 at 915.799 kb on + strand, within IAI47_04360 at 915.800 kb on - strand, within IAI47_04360 at 915.800 kb on - strand, within IAI47_04360 at 915.800 kb on - strand, within IAI47_04360 at 915.800 kb on - strand, within IAI47_04360 at 915.800 kb on - strand, within IAI47_04360 at 915.800 kb on - strand, within IAI47_04360 at 915.800 kb on - strand, within IAI47_04360 at 915.874 kb on + strand, within IAI47_04360 at 915.874 kb on + strand, within IAI47_04360 at 915.875 kb on - strand, within IAI47_04360 at 915.885 kb on + strand, within IAI47_04360 at 915.885 kb on + strand, within IAI47_04360 at 915.885 kb on + strand, within IAI47_04360 at 915.885 kb on + strand, within IAI47_04360 at 915.885 kb on + strand, within IAI47_04360 at 915.886 kb on - strand, within IAI47_04360 at 915.886 kb on - strand, within IAI47_04360 at 915.886 kb on - strand, within IAI47_04360 at 915.899 kb on + strand, within IAI47_04360 at 915.899 kb on + strand, within IAI47_04360 at 915.899 kb on + strand, within IAI47_04360 at 915.900 kb on - strand, within IAI47_04360 at 915.900 kb on - strand, within IAI47_04360 at 915.900 kb on - strand, within IAI47_04360 at 915.900 kb on - strand, within IAI47_04360 at 915.900 kb on - strand, within IAI47_04360 at 915.900 kb on - strand, within IAI47_04360 at 915.900 kb on - strand, within IAI47_04360 at 915.900 kb on - strand, within IAI47_04360 at 915.900 kb on - strand, within IAI47_04360 at 915.900 kb on - strand, within IAI47_04360 at 915.925 kb on + strand, within IAI47_04360 at 915.925 kb on + strand, within IAI47_04360 at 915.946 kb on + strand, within IAI47_04360 at 915.947 kb on - strand, within IAI47_04360 at 915.973 kb on + strand, within IAI47_04360 at 916.001 kb on + strand, within IAI47_04360 at 916.001 kb on + strand, within IAI47_04360 at 916.011 kb on + strand, within IAI47_04360 at 916.011 kb on + strand, within IAI47_04360 at 916.011 kb on + strand, within IAI47_04360 at 916.011 kb on + strand, within IAI47_04360 at 916.011 kb on + strand, within IAI47_04360 at 916.011 kb on + strand, within IAI47_04360 at 916.012 kb on - strand, within IAI47_04360 at 916.012 kb on - strand, within IAI47_04360 at 916.012 kb on - strand, within IAI47_04360 at 916.012 kb on - strand, within IAI47_04360 at 916.012 kb on - strand, within IAI47_04360 at 916.025 kb on - strand, within IAI47_04360 at 916.029 kb on - strand, within IAI47_04360 at 916.029 kb on - strand, within IAI47_04360 at 916.045 kb on - strand, within IAI47_04360 at 916.155 kb on + strand, within IAI47_04360 at 916.155 kb on + strand, within IAI47_04360 at 916.155 kb on + strand, within IAI47_04360 at 916.155 kb on + strand, within IAI47_04360 at 916.155 kb on + strand, within IAI47_04360 at 916.155 kb on + strand, within IAI47_04360 at 916.155 kb on + strand, within IAI47_04360 at 916.155 kb on + strand, within IAI47_04360 at 916.156 kb on - strand, within IAI47_04360 at 916.156 kb on - strand, within IAI47_04360 at 916.156 kb on - strand, within IAI47_04360 at 916.156 kb on - strand, within IAI47_04360 at 916.156 kb on - strand, within IAI47_04360 at 916.156 kb on - strand, within IAI47_04360 at 916.156 kb on - strand, within IAI47_04360 at 916.174 kb on + strand, within IAI47_04360 at 916.174 kb on + strand, within IAI47_04360 at 916.174 kb on + strand, within IAI47_04360 at 916.174 kb on + strand, within IAI47_04360 at 916.175 kb on - strand, within IAI47_04360 at 916.175 kb on - strand, within IAI47_04360 at 916.175 kb on - strand, within IAI47_04360 at 916.175 kb on - strand, within IAI47_04360 at 916.181 kb on + strand, within IAI47_04360 at 916.210 kb on + strand, within IAI47_04360 at 916.210 kb on + strand, within IAI47_04360 at 916.210 kb on + strand, within IAI47_04360 at 916.210 kb on + strand, within IAI47_04360 at 916.211 kb on - strand, within IAI47_04360 at 916.211 kb on - strand, within IAI47_04360 at 916.213 kb on + strand, within IAI47_04360 at 916.213 kb on + strand, within IAI47_04360 at 916.213 kb on + strand, within IAI47_04360 at 916.214 kb on - strand, within IAI47_04360 at 916.214 kb on - strand, within IAI47_04360 at 916.295 kb on - strand at 916.295 kb on - strand at 916.312 kb on + strand at 916.312 kb on + strand at 916.312 kb on + strand at 916.313 kb on - strand at 916.313 kb on - strand at 916.313 kb on - strand at 916.313 kb on - strand at 916.313 kb on - strand at 916.314 kb on + strand at 916.356 kb on + strand at 916.357 kb on - strand at 916.357 kb on - strand at 916.357 kb on - strand at 916.357 kb on - strand at 916.357 kb on - strand at 916.357 kb on - strand at 916.357 kb on - strand at 916.358 kb on - strand at 916.370 kb on + strand at 916.370 kb on + strand at 916.371 kb on - strand at 916.371 kb on - strand at 916.387 kb on + strand at 916.387 kb on + strand at 916.387 kb on + strand at 916.387 kb on + strand at 916.388 kb on - strand at 916.388 kb on - strand at 916.388 kb on - strand at 916.390 kb on + strand at 916.390 kb on + strand at 916.390 kb on + strand at 916.391 kb on - strand at 916.391 kb on - strand at 916.402 kb on + strand at 916.403 kb on - strand at 916.403 kb on - strand at 916.485 kb on + strand at 916.485 kb on + strand at 916.485 kb on + strand at 916.486 kb on - strand at 916.486 kb on - strand at 916.519 kb on + strand, within IAI47_04365 at 916.520 kb on - strand, within IAI47_04365 at 916.557 kb on + strand, within IAI47_04365 at 916.557 kb on + strand, within IAI47_04365 at 916.557 kb on + strand, within IAI47_04365 at 916.557 kb on + strand, within IAI47_04365 at 916.557 kb on + strand, within IAI47_04365 at 916.557 kb on + strand, within IAI47_04365 at 916.558 kb on - strand, within IAI47_04365 at 916.558 kb on - strand, within IAI47_04365 at 916.558 kb on - strand, within IAI47_04365 at 916.579 kb on + strand, within IAI47_04365 at 916.579 kb on + strand, within IAI47_04365 at 916.579 kb on + strand, within IAI47_04365 at 916.580 kb on - strand, within IAI47_04365 at 916.580 kb on - strand, within IAI47_04365 at 916.580 kb on - strand, within IAI47_04365 at 916.581 kb on + strand, within IAI47_04365 at 916.581 kb on + strand, within IAI47_04365 at 916.581 kb on + strand, within IAI47_04365 at 916.581 kb on + strand, within IAI47_04365 at 916.581 kb on + strand, within IAI47_04365 at 916.582 kb on - strand, within IAI47_04365 at 916.582 kb on - strand, within IAI47_04365 at 916.582 kb on - strand, within IAI47_04365 at 916.615 kb on + strand, within IAI47_04365 at 916.615 kb on + strand, within IAI47_04365 at 916.648 kb on + strand, within IAI47_04365 at 916.648 kb on + strand, within IAI47_04365 at 916.648 kb on + strand, within IAI47_04365 at 916.648 kb on + strand, within IAI47_04365 at 916.649 kb on - strand, within IAI47_04365 at 916.649 kb on - strand, within IAI47_04365 at 916.650 kb on + strand, within IAI47_04365 at 916.650 kb on + strand, within IAI47_04365 at 916.650 kb on + strand, within IAI47_04365 at 916.650 kb on + strand, within IAI47_04365 at 916.651 kb on - strand, within IAI47_04365 at 916.651 kb on - strand, within IAI47_04365 at 916.705 kb on + strand, within IAI47_04365 at 916.705 kb on + strand, within IAI47_04365 at 916.705 kb on + strand, within IAI47_04365 at 916.706 kb on - strand, within IAI47_04365 at 916.706 kb on - strand, within IAI47_04365 at 916.706 kb on - strand, within IAI47_04365 at 916.706 kb on - strand, within IAI47_04365 at 916.706 kb on - strand, within IAI47_04365 at 916.717 kb on + strand, within IAI47_04365 at 916.717 kb on + strand, within IAI47_04365 at 916.717 kb on + strand, within IAI47_04365 at 916.718 kb on - strand, within IAI47_04365 at 916.718 kb on - strand, within IAI47_04365 at 916.718 kb on - strand, within IAI47_04365 at 916.718 kb on - strand, within IAI47_04365 at 916.718 kb on - strand, within IAI47_04365 at 916.718 kb on - strand, within IAI47_04365 at 916.718 kb on - strand, within IAI47_04365 at 916.718 kb on - strand, within IAI47_04365 at 916.718 kb on - strand, within IAI47_04365 at 916.718 kb on - strand, within IAI47_04365 at 916.745 kb on - strand, within IAI47_04365 at 916.745 kb on - strand, within IAI47_04365 at 916.776 kb on - strand, within IAI47_04365 at 916.810 kb on - strand, within IAI47_04365 at 916.836 kb on + strand, within IAI47_04365 at 916.879 kb on + strand, within IAI47_04365 at 916.880 kb on - strand, within IAI47_04365 at 916.880 kb on - strand, within IAI47_04365 at 916.948 kb on + strand, within IAI47_04365 at 916.948 kb on + strand, within IAI47_04365 at 916.948 kb on + strand, within IAI47_04365 at 916.948 kb on + strand, within IAI47_04365 at 916.949 kb on - strand, within IAI47_04365 at 916.949 kb on - strand, within IAI47_04365 at 916.949 kb on - strand, within IAI47_04365 at 916.949 kb on - strand, within IAI47_04365 at 916.949 kb on - strand, within IAI47_04365 at 916.949 kb on - strand, within IAI47_04365 at 916.950 kb on + strand, within IAI47_04365 at 916.951 kb on - strand, within IAI47_04365 at 916.951 kb on - strand, within IAI47_04365 at 916.967 kb on + strand, within IAI47_04365 at 917.041 kb on + strand, within IAI47_04365 at 917.041 kb on + strand, within IAI47_04365 at 917.042 kb on - strand, within IAI47_04365 at 917.042 kb on - strand, within IAI47_04365 at 917.042 kb on - strand, within IAI47_04365 at 917.042 kb on - strand, within IAI47_04365 at 917.042 kb on - strand, within IAI47_04365 at 917.042 kb on - strand, within IAI47_04365 at 917.042 kb on - strand, within IAI47_04365 at 917.051 kb on + strand, within IAI47_04365 at 917.051 kb on + strand, within IAI47_04365 at 917.051 kb on + strand, within IAI47_04365 at 917.052 kb on - strand, within IAI47_04365 at 917.052 kb on - strand, within IAI47_04365 at 917.052 kb on - strand, within IAI47_04365 at 917.065 kb on + strand, within IAI47_04365 at 917.068 kb on - strand, within IAI47_04365 at 917.071 kb on + strand, within IAI47_04365 at 917.071 kb on + strand, within IAI47_04365 at 917.071 kb on + strand, within IAI47_04365 at 917.072 kb on - strand, within IAI47_04365 at 917.078 kb on + strand, within IAI47_04365 at 917.078 kb on + strand, within IAI47_04365 at 917.078 kb on + strand, within IAI47_04365 at 917.078 kb on + strand, within IAI47_04365 at 917.078 kb on + strand, within IAI47_04365 at 917.078 kb on + strand, within IAI47_04365 at 917.078 kb on + strand, within IAI47_04365 at 917.078 kb on + strand, within IAI47_04365 at 917.079 kb on - strand, within IAI47_04365 at 917.079 kb on - strand, within IAI47_04365 at 917.079 kb on - strand, within IAI47_04365 at 917.079 kb on - strand, within IAI47_04365 at 917.158 kb on + strand at 917.159 kb on - strand at 917.195 kb on + strand at 917.195 kb on + strand at 917.195 kb on + strand at 917.196 kb on - strand at 917.196 kb on - strand at 917.196 kb on - strand at 917.196 kb on - strand at 917.196 kb on - strand at 917.196 kb on - strand at 917.202 kb on + strand at 917.203 kb on - strand at 917.203 kb on - strand at 917.210 kb on + strand at 917.220 kb on - strand at 917.236 kb on + strand at 917.236 kb on + strand at 917.236 kb on + strand at 917.236 kb on + strand at 917.236 kb on + strand at 917.237 kb on - strand at 917.237 kb on - strand at 917.237 kb on - strand at 917.237 kb on - strand at 917.237 kb on - strand at 917.237 kb on - strand at 917.237 kb on - strand at 917.237 kb on - strand at 917.260 kb on + strand at 917.261 kb on - strand at 917.261 kb on - strand at 917.275 kb on + strand at 917.275 kb on + strand at 917.275 kb on + strand at 917.275 kb on + strand at 917.276 kb on - strand at 917.276 kb on - strand at 917.276 kb on - strand at 917.277 kb on + strand at 917.277 kb on + strand at 917.278 kb on - strand at 917.278 kb on - strand at 917.278 kb on - strand at 917.344 kb on + strand at 917.346 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 1 remove 915,468 - IAI47_04360 0.26 +0.0 915,468 - IAI47_04360 0.26 -0.5 915,495 + IAI47_04360 0.28 -0.1 915,496 - IAI47_04360 0.28 -0.4 915,496 - IAI47_04360 0.28 -0.7 915,496 - IAI47_04360 0.28 +0.9 915,496 - IAI47_04360 0.28 -0.7 915,499 + IAI47_04360 0.28 -1.4 915,579 + IAI47_04360 0.35 +1.0 915,579 + IAI47_04360 0.35 +0.6 915,580 - IAI47_04360 0.35 +0.0 915,580 - IAI47_04360 0.35 -0.9 915,580 - IAI47_04360 0.35 -0.4 915,580 - IAI47_04360 0.35 -1.1 915,580 - IAI47_04360 0.35 -1.3 915,582 + IAI47_04360 0.35 -0.2 915,582 + IAI47_04360 0.35 -0.9 915,582 + IAI47_04360 0.35 -1.3 915,583 - IAI47_04360 0.35 -0.5 915,583 - IAI47_04360 0.35 -0.4 915,583 - IAI47_04360 0.35 -0.4 915,731 + IAI47_04360 0.46 -0.0 915,731 + IAI47_04360 0.46 -0.9 915,731 + IAI47_04360 0.46 +0.5 915,732 - IAI47_04360 0.46 -1.3 915,732 - IAI47_04360 0.46 +0.2 915,732 - IAI47_04360 0.46 -0.8 915,773 - IAI47_04360 0.50 -1.2 915,773 - IAI47_04360 0.50 +1.3 915,773 - IAI47_04360 0.50 -0.9 915,773 - IAI47_04360 0.50 +0.5 915,773 - IAI47_04360 0.50 +0.2 915,799 + IAI47_04360 0.52 +0.4 915,799 + IAI47_04360 0.52 -0.6 915,799 + IAI47_04360 0.52 +3.6 915,799 + IAI47_04360 0.52 -0.2 915,799 + IAI47_04360 0.52 +0.3 915,799 + IAI47_04360 0.52 +0.6 915,800 - IAI47_04360 0.52 +0.8 915,800 - IAI47_04360 0.52 +0.4 915,800 - IAI47_04360 0.52 -0.4 915,800 - IAI47_04360 0.52 +0.1 915,800 - IAI47_04360 0.52 +0.6 915,800 - IAI47_04360 0.52 -0.8 915,800 - IAI47_04360 0.52 -0.8 915,874 + IAI47_04360 0.57 -0.1 915,874 + IAI47_04360 0.57 +0.6 915,875 - IAI47_04360 0.58 +0.9 915,885 + IAI47_04360 0.58 -0.4 915,885 + IAI47_04360 0.58 +0.9 915,885 + IAI47_04360 0.58 -0.5 915,885 + IAI47_04360 0.58 -0.8 915,885 + IAI47_04360 0.58 -0.4 915,886 - IAI47_04360 0.58 -1.2 915,886 - IAI47_04360 0.58 +1.1 915,886 - IAI47_04360 0.58 -0.7 915,899 + IAI47_04360 0.59 +0.2 915,899 + IAI47_04360 0.59 +0.2 915,899 + IAI47_04360 0.59 -1.2 915,900 - IAI47_04360 0.60 -0.5 915,900 - IAI47_04360 0.60 +0.9 915,900 - IAI47_04360 0.60 -1.1 915,900 - IAI47_04360 0.60 -0.4 915,900 - IAI47_04360 0.60 -0.1 915,900 - IAI47_04360 0.60 -1.9 915,900 - IAI47_04360 0.60 +0.2 915,900 - IAI47_04360 0.60 +0.2 915,900 - IAI47_04360 0.60 +0.4 915,900 - IAI47_04360 0.60 -0.1 915,925 + IAI47_04360 0.61 -0.9 915,925 + IAI47_04360 0.61 +3.0 915,946 + IAI47_04360 0.63 -0.8 915,947 - IAI47_04360 0.63 +1.2 915,973 + IAI47_04360 0.65 +0.9 916,001 + IAI47_04360 0.67 -0.4 916,001 + IAI47_04360 0.67 -1.7 916,011 + IAI47_04360 0.68 -0.7 916,011 + IAI47_04360 0.68 -2.5 916,011 + IAI47_04360 0.68 +0.2 916,011 + IAI47_04360 0.68 +0.1 916,011 + IAI47_04360 0.68 +0.5 916,011 + IAI47_04360 0.68 +1.4 916,012 - IAI47_04360 0.68 -0.3 916,012 - IAI47_04360 0.68 -0.1 916,012 - IAI47_04360 0.68 -0.6 916,012 - IAI47_04360 0.68 +0.2 916,012 - IAI47_04360 0.68 +0.6 916,025 - IAI47_04360 0.69 +0.3 916,029 - IAI47_04360 0.70 -0.2 916,029 - IAI47_04360 0.70 +0.5 916,045 - IAI47_04360 0.71 +0.3 916,155 + IAI47_04360 0.79 +0.1 916,155 + IAI47_04360 0.79 +1.1 916,155 + IAI47_04360 0.79 +0.4 916,155 + IAI47_04360 0.79 -1.6 916,155 + IAI47_04360 0.79 -0.4 916,155 + IAI47_04360 0.79 -0.2 916,155 + IAI47_04360 0.79 -0.0 916,155 + IAI47_04360 0.79 -0.1 916,156 - IAI47_04360 0.79 -0.1 916,156 - IAI47_04360 0.79 +0.5 916,156 - IAI47_04360 0.79 -0.5 916,156 - IAI47_04360 0.79 -2.8 916,156 - IAI47_04360 0.79 -1.6 916,156 - IAI47_04360 0.79 -1.9 916,156 - IAI47_04360 0.79 +0.0 916,174 + IAI47_04360 0.81 +1.6 916,174 + IAI47_04360 0.81 +1.0 916,174 + IAI47_04360 0.81 -0.2 916,174 + IAI47_04360 0.81 -0.7 916,175 - IAI47_04360 0.81 +0.1 916,175 - IAI47_04360 0.81 +1.9 916,175 - IAI47_04360 0.81 -0.1 916,175 - IAI47_04360 0.81 +0.6 916,181 + IAI47_04360 0.81 -0.3 916,210 + IAI47_04360 0.84 -0.2 916,210 + IAI47_04360 0.84 +1.2 916,210 + IAI47_04360 0.84 -1.4 916,210 + IAI47_04360 0.84 +0.2 916,211 - IAI47_04360 0.84 -0.9 916,211 - IAI47_04360 0.84 -0.8 916,213 + IAI47_04360 0.84 -0.4 916,213 + IAI47_04360 0.84 -0.4 916,213 + IAI47_04360 0.84 +1.2 916,214 - IAI47_04360 0.84 -1.5 916,214 - IAI47_04360 0.84 +2.2 916,295 - -0.8 916,295 - -0.1 916,312 + -0.9 916,312 + -1.7 916,312 + +0.8 916,313 - +1.1 916,313 - -0.2 916,313 - -0.7 916,313 - +0.1 916,313 - -0.9 916,314 + +0.6 916,356 + +0.0 916,357 - 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Or see this region's nucleotide sequence