Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01700

Experiment: Cytosine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01699 and MPMX20_01700 are separated by 243 nucleotidesMPMX20_01700 and MPMX20_01701 overlap by 4 nucleotidesMPMX20_01701 and MPMX20_01702 are separated by 101 nucleotides MPMX20_01699: MPMX20_01699 - Pyrimidine monooxygenase RutA, at 1,794,760 to 1,795,851 _01699 MPMX20_01700: MPMX20_01700 - HTH-type transcriptional regulator RutR, at 1,796,095 to 1,796,733 _01700 MPMX20_01701: MPMX20_01701 - hypothetical protein, at 1,796,730 to 1,797,125 _01701 MPMX20_01702: MPMX20_01702 - Bifunctional protein PutA, at 1,797,227 to 1,801,189 _01702 Position (kb) 1796 1797Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 1795.124 kb on + strand, within MPMX20_01699at 1795.142 kb on - strand, within MPMX20_01699at 1795.183 kb on - strand, within MPMX20_01699at 1795.214 kb on + strand, within MPMX20_01699at 1795.224 kb on - strand, within MPMX20_01699at 1795.224 kb on - strand, within MPMX20_01699at 1795.282 kb on + strand, within MPMX20_01699at 1795.290 kb on - strand, within MPMX20_01699at 1795.311 kb on + strand, within MPMX20_01699at 1795.391 kb on + strand, within MPMX20_01699at 1795.415 kb on - strand, within MPMX20_01699at 1795.426 kb on - strand, within MPMX20_01699at 1795.504 kb on - strand, within MPMX20_01699at 1795.514 kb on - strand, within MPMX20_01699at 1795.578 kb on + strand, within MPMX20_01699at 1795.578 kb on + strand, within MPMX20_01699at 1795.586 kb on - strand, within MPMX20_01699at 1795.586 kb on - strand, within MPMX20_01699at 1795.606 kb on - strand, within MPMX20_01699at 1795.611 kb on - strand, within MPMX20_01699at 1795.644 kb on + strand, within MPMX20_01699at 1795.757 kb on + strandat 1795.757 kb on + strandat 1795.757 kb on + strandat 1795.757 kb on + strandat 1795.757 kb on + strandat 1795.765 kb on - strandat 1795.803 kb on + strandat 1795.963 kb on + strandat 1796.036 kb on + strandat 1796.044 kb on - strandat 1796.061 kb on - strandat 1796.168 kb on + strand, within MPMX20_01700at 1796.173 kb on + strand, within MPMX20_01700at 1796.178 kb on + strand, within MPMX20_01700at 1796.299 kb on - strand, within MPMX20_01700at 1796.364 kb on + strand, within MPMX20_01700at 1796.426 kb on + strand, within MPMX20_01700at 1796.431 kb on + strand, within MPMX20_01700at 1796.431 kb on + strand, within MPMX20_01700at 1796.449 kb on - strand, within MPMX20_01700at 1796.600 kb on + strand, within MPMX20_01700at 1796.607 kb on + strand, within MPMX20_01700at 1796.631 kb on + strand, within MPMX20_01700at 1796.631 kb on + strand, within MPMX20_01700at 1796.744 kb on + strandat 1796.749 kb on + strandat 1796.767 kb on + strandat 1796.776 kb on - strand, within MPMX20_01701at 1796.833 kb on - strand, within MPMX20_01701at 1796.846 kb on + strand, within MPMX20_01701at 1796.854 kb on - strand, within MPMX20_01701at 1796.893 kb on + strand, within MPMX20_01701at 1796.898 kb on + strand, within MPMX20_01701at 1796.901 kb on - strand, within MPMX20_01701at 1796.903 kb on + strand, within MPMX20_01701at 1796.903 kb on + strand, within MPMX20_01701at 1796.903 kb on + strand, within MPMX20_01701at 1796.903 kb on + strand, within MPMX20_01701at 1796.911 kb on - strand, within MPMX20_01701at 1796.911 kb on - strand, within MPMX20_01701at 1796.911 kb on - strand, within MPMX20_01701at 1796.979 kb on + strand, within MPMX20_01701at 1797.004 kb on + strand, within MPMX20_01701at 1797.004 kb on + strand, within MPMX20_01701at 1797.004 kb on + strand, within MPMX20_01701at 1797.004 kb on + strand, within MPMX20_01701at 1797.012 kb on + strand, within MPMX20_01701at 1797.012 kb on + strand, within MPMX20_01701at 1797.020 kb on + strand, within MPMX20_01701at 1797.020 kb on - strand, within MPMX20_01701at 1797.028 kb on - strand, within MPMX20_01701at 1797.092 kb on + strandat 1797.113 kb on + strandat 1797.158 kb on + strandat 1797.158 kb on + strandat 1797.158 kb on + strandat 1797.166 kb on - strandat 1797.197 kb on + strandat 1797.270 kb on + strandat 1797.294 kb on + strandat 1797.294 kb on + strandat 1797.304 kb on - strandat 1797.338 kb on + strandat 1797.338 kb on + strandat 1797.346 kb on - strandat 1797.346 kb on - strandat 1797.450 kb on + strandat 1797.499 kb on - strandat 1797.610 kb on + strandat 1797.610 kb on + strandat 1797.618 kb on - strandat 1797.618 kb on - strandat 1797.631 kb on + strand, within MPMX20_01702at 1797.639 kb on + strand, within MPMX20_01702at 1797.670 kb on - strand, within MPMX20_01702at 1797.678 kb on + strand, within MPMX20_01702at 1797.707 kb on - strand, within MPMX20_01702at 1797.727 kb on - strand, within MPMX20_01702

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytosine (N)
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1,795,124 + MPMX20_01699 0.33 -2.2
1,795,142 - MPMX20_01699 0.35 -4.1
1,795,183 - MPMX20_01699 0.39 -2.1
1,795,214 + MPMX20_01699 0.42 +1.0
1,795,224 - MPMX20_01699 0.42 -3.3
1,795,224 - MPMX20_01699 0.42 -3.5
1,795,282 + MPMX20_01699 0.48 -3.3
1,795,290 - MPMX20_01699 0.49 -2.5
1,795,311 + MPMX20_01699 0.50 -3.0
1,795,391 + MPMX20_01699 0.58 -4.8
1,795,415 - MPMX20_01699 0.60 -1.4
1,795,426 - MPMX20_01699 0.61 -3.5
1,795,504 - MPMX20_01699 0.68 -3.1
1,795,514 - MPMX20_01699 0.69 -2.4
1,795,578 + MPMX20_01699 0.75 -2.3
1,795,578 + MPMX20_01699 0.75 -3.6
1,795,586 - MPMX20_01699 0.76 -4.6
1,795,586 - MPMX20_01699 0.76 -2.9
1,795,606 - MPMX20_01699 0.77 -2.8
1,795,611 - MPMX20_01699 0.78 -1.4
1,795,644 + MPMX20_01699 0.81 -1.7
1,795,757 + -3.0
1,795,757 + -4.0
1,795,757 + -3.1
1,795,757 + -2.2
1,795,757 + +0.6
1,795,765 - -2.6
1,795,803 + -4.1
1,795,963 + -1.6
1,796,036 + -0.2
1,796,044 - +0.2
1,796,061 - -1.2
1,796,168 + MPMX20_01700 0.11 +1.6
1,796,173 + MPMX20_01700 0.12 +0.7
1,796,178 + MPMX20_01700 0.13 +1.0
1,796,299 - MPMX20_01700 0.32 +1.1
1,796,364 + MPMX20_01700 0.42 +2.0
1,796,426 + MPMX20_01700 0.52 +1.8
1,796,431 + MPMX20_01700 0.53 +0.7
1,796,431 + MPMX20_01700 0.53 +1.3
1,796,449 - MPMX20_01700 0.55 +2.3
1,796,600 + MPMX20_01700 0.79 +0.0
1,796,607 + MPMX20_01700 0.80 +2.3
1,796,631 + MPMX20_01700 0.84 -0.3
1,796,631 + MPMX20_01700 0.84 +1.5
1,796,744 + +1.3
1,796,749 + -1.1
1,796,767 + -0.7
1,796,776 - MPMX20_01701 0.12 -0.2
1,796,833 - MPMX20_01701 0.26 -0.2
1,796,846 + MPMX20_01701 0.29 +0.2
1,796,854 - MPMX20_01701 0.31 -0.3
1,796,893 + MPMX20_01701 0.41 +0.5
1,796,898 + MPMX20_01701 0.42 -0.1
1,796,901 - MPMX20_01701 0.43 -0.3
1,796,903 + MPMX20_01701 0.44 +0.1
1,796,903 + MPMX20_01701 0.44 +0.5
1,796,903 + MPMX20_01701 0.44 +1.1
1,796,903 + MPMX20_01701 0.44 -1.3
1,796,911 - MPMX20_01701 0.46 +0.2
1,796,911 - MPMX20_01701 0.46 -1.3
1,796,911 - MPMX20_01701 0.46 -0.5
1,796,979 + MPMX20_01701 0.63 +0.6
1,797,004 + MPMX20_01701 0.69 +0.6
1,797,004 + MPMX20_01701 0.69 -0.7
1,797,004 + MPMX20_01701 0.69 -0.8
1,797,004 + MPMX20_01701 0.69 +0.6
1,797,012 + MPMX20_01701 0.71 -0.2
1,797,012 + MPMX20_01701 0.71 -0.3
1,797,020 + MPMX20_01701 0.73 -0.4
1,797,020 - MPMX20_01701 0.73 -2.1
1,797,028 - MPMX20_01701 0.75 -0.0
1,797,092 + -0.0
1,797,113 + +1.3
1,797,158 + +0.9
1,797,158 + +1.0
1,797,158 + -0.3
1,797,166 - -0.7
1,797,197 + +0.0
1,797,270 + -0.4
1,797,294 + +0.6
1,797,294 + -0.5
1,797,304 - +0.4
1,797,338 + +2.5
1,797,338 + +0.5
1,797,346 - -1.2
1,797,346 - -1.1
1,797,450 + -0.2
1,797,499 - +0.3
1,797,610 + +0.6
1,797,610 + +0.6
1,797,618 - -2.2
1,797,618 - +0.4
1,797,631 + MPMX20_01702 0.10 +0.3
1,797,639 + MPMX20_01702 0.10 +0.1
1,797,670 - MPMX20_01702 0.11 +0.4
1,797,678 + MPMX20_01702 0.11 -0.2
1,797,707 - MPMX20_01702 0.12 -2.7
1,797,727 - MPMX20_01702 0.13 -1.8

Or see this region's nucleotide sequence