Experiment: Cytosine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01699 and MPMX20_01700 are separated by 243 nucleotides MPMX20_01700 and MPMX20_01701 overlap by 4 nucleotides MPMX20_01701 and MPMX20_01702 are separated by 101 nucleotides
MPMX20_01699: MPMX20_01699 - Pyrimidine monooxygenase RutA, at 1,794,760 to 1,795,851
_01699
MPMX20_01700: MPMX20_01700 - HTH-type transcriptional regulator RutR, at 1,796,095 to 1,796,733
_01700
MPMX20_01701: MPMX20_01701 - hypothetical protein, at 1,796,730 to 1,797,125
_01701
MPMX20_01702: MPMX20_01702 - Bifunctional protein PutA, at 1,797,227 to 1,801,189
_01702
Position (kb)
1796
1797 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2 at 1795.124 kb on + strand, within MPMX20_01699 at 1795.142 kb on - strand, within MPMX20_01699 at 1795.183 kb on - strand, within MPMX20_01699 at 1795.214 kb on + strand, within MPMX20_01699 at 1795.224 kb on - strand, within MPMX20_01699 at 1795.224 kb on - strand, within MPMX20_01699 at 1795.282 kb on + strand, within MPMX20_01699 at 1795.290 kb on - strand, within MPMX20_01699 at 1795.311 kb on + strand, within MPMX20_01699 at 1795.391 kb on + strand, within MPMX20_01699 at 1795.415 kb on - strand, within MPMX20_01699 at 1795.426 kb on - strand, within MPMX20_01699 at 1795.504 kb on - strand, within MPMX20_01699 at 1795.514 kb on - strand, within MPMX20_01699 at 1795.578 kb on + strand, within MPMX20_01699 at 1795.578 kb on + strand, within MPMX20_01699 at 1795.586 kb on - strand, within MPMX20_01699 at 1795.586 kb on - strand, within MPMX20_01699 at 1795.606 kb on - strand, within MPMX20_01699 at 1795.611 kb on - strand, within MPMX20_01699 at 1795.644 kb on + strand, within MPMX20_01699 at 1795.757 kb on + strand at 1795.757 kb on + strand at 1795.757 kb on + strand at 1795.757 kb on + strand at 1795.757 kb on + strand at 1795.765 kb on - strand at 1795.803 kb on + strand at 1795.963 kb on + strand at 1796.036 kb on + strand at 1796.044 kb on - strand at 1796.061 kb on - strand at 1796.168 kb on + strand, within MPMX20_01700 at 1796.173 kb on + strand, within MPMX20_01700 at 1796.178 kb on + strand, within MPMX20_01700 at 1796.299 kb on - strand, within MPMX20_01700 at 1796.364 kb on + strand, within MPMX20_01700 at 1796.426 kb on + strand, within MPMX20_01700 at 1796.431 kb on + strand, within MPMX20_01700 at 1796.431 kb on + strand, within MPMX20_01700 at 1796.449 kb on - strand, within MPMX20_01700 at 1796.600 kb on + strand, within MPMX20_01700 at 1796.607 kb on + strand, within MPMX20_01700 at 1796.631 kb on + strand, within MPMX20_01700 at 1796.631 kb on + strand, within MPMX20_01700 at 1796.744 kb on + strand at 1796.749 kb on + strand at 1796.767 kb on + strand at 1796.776 kb on - strand, within MPMX20_01701 at 1796.833 kb on - strand, within MPMX20_01701 at 1796.846 kb on + strand, within MPMX20_01701 at 1796.854 kb on - strand, within MPMX20_01701 at 1796.893 kb on + strand, within MPMX20_01701 at 1796.898 kb on + strand, within MPMX20_01701 at 1796.901 kb on - strand, within MPMX20_01701 at 1796.903 kb on + strand, within MPMX20_01701 at 1796.903 kb on + strand, within MPMX20_01701 at 1796.903 kb on + strand, within MPMX20_01701 at 1796.903 kb on + strand, within MPMX20_01701 at 1796.911 kb on - strand, within MPMX20_01701 at 1796.911 kb on - strand, within MPMX20_01701 at 1796.911 kb on - strand, within MPMX20_01701 at 1796.979 kb on + strand, within MPMX20_01701 at 1797.004 kb on + strand, within MPMX20_01701 at 1797.004 kb on + strand, within MPMX20_01701 at 1797.004 kb on + strand, within MPMX20_01701 at 1797.004 kb on + strand, within MPMX20_01701 at 1797.012 kb on + strand, within MPMX20_01701 at 1797.012 kb on + strand, within MPMX20_01701 at 1797.020 kb on + strand, within MPMX20_01701 at 1797.020 kb on - strand, within MPMX20_01701 at 1797.028 kb on - strand, within MPMX20_01701 at 1797.092 kb on + strand at 1797.113 kb on + strand at 1797.158 kb on + strand at 1797.158 kb on + strand at 1797.158 kb on + strand at 1797.166 kb on - strand at 1797.197 kb on + strand at 1797.270 kb on + strand at 1797.294 kb on + strand at 1797.294 kb on + strand at 1797.304 kb on - strand at 1797.338 kb on + strand at 1797.338 kb on + strand at 1797.346 kb on - strand at 1797.346 kb on - strand at 1797.450 kb on + strand at 1797.499 kb on - strand at 1797.610 kb on + strand at 1797.610 kb on + strand at 1797.618 kb on - strand at 1797.618 kb on - strand at 1797.631 kb on + strand, within MPMX20_01702 at 1797.639 kb on + strand, within MPMX20_01702 at 1797.670 kb on - strand, within MPMX20_01702 at 1797.678 kb on + strand, within MPMX20_01702 at 1797.707 kb on - strand, within MPMX20_01702 at 1797.727 kb on - strand, within MPMX20_01702
Per-strain Table
Position Strand Gene LocusTag Fraction Cytosine (N) remove 1,795,124 + MPMX20_01699 0.33 -2.2 1,795,142 - MPMX20_01699 0.35 -4.1 1,795,183 - MPMX20_01699 0.39 -2.1 1,795,214 + MPMX20_01699 0.42 +1.0 1,795,224 - MPMX20_01699 0.42 -3.3 1,795,224 - MPMX20_01699 0.42 -3.5 1,795,282 + MPMX20_01699 0.48 -3.3 1,795,290 - MPMX20_01699 0.49 -2.5 1,795,311 + MPMX20_01699 0.50 -3.0 1,795,391 + MPMX20_01699 0.58 -4.8 1,795,415 - MPMX20_01699 0.60 -1.4 1,795,426 - MPMX20_01699 0.61 -3.5 1,795,504 - MPMX20_01699 0.68 -3.1 1,795,514 - MPMX20_01699 0.69 -2.4 1,795,578 + MPMX20_01699 0.75 -2.3 1,795,578 + MPMX20_01699 0.75 -3.6 1,795,586 - MPMX20_01699 0.76 -4.6 1,795,586 - MPMX20_01699 0.76 -2.9 1,795,606 - MPMX20_01699 0.77 -2.8 1,795,611 - MPMX20_01699 0.78 -1.4 1,795,644 + MPMX20_01699 0.81 -1.7 1,795,757 + -3.0 1,795,757 + -4.0 1,795,757 + -3.1 1,795,757 + -2.2 1,795,757 + +0.6 1,795,765 - -2.6 1,795,803 + -4.1 1,795,963 + -1.6 1,796,036 + -0.2 1,796,044 - +0.2 1,796,061 - -1.2 1,796,168 + MPMX20_01700 0.11 +1.6 1,796,173 + MPMX20_01700 0.12 +0.7 1,796,178 + MPMX20_01700 0.13 +1.0 1,796,299 - MPMX20_01700 0.32 +1.1 1,796,364 + MPMX20_01700 0.42 +2.0 1,796,426 + MPMX20_01700 0.52 +1.8 1,796,431 + MPMX20_01700 0.53 +0.7 1,796,431 + MPMX20_01700 0.53 +1.3 1,796,449 - MPMX20_01700 0.55 +2.3 1,796,600 + MPMX20_01700 0.79 +0.0 1,796,607 + MPMX20_01700 0.80 +2.3 1,796,631 + MPMX20_01700 0.84 -0.3 1,796,631 + MPMX20_01700 0.84 +1.5 1,796,744 + +1.3 1,796,749 + -1.1 1,796,767 + -0.7 1,796,776 - MPMX20_01701 0.12 -0.2 1,796,833 - MPMX20_01701 0.26 -0.2 1,796,846 + MPMX20_01701 0.29 +0.2 1,796,854 - MPMX20_01701 0.31 -0.3 1,796,893 + MPMX20_01701 0.41 +0.5 1,796,898 + MPMX20_01701 0.42 -0.1 1,796,901 - MPMX20_01701 0.43 -0.3 1,796,903 + MPMX20_01701 0.44 +0.1 1,796,903 + MPMX20_01701 0.44 +0.5 1,796,903 + MPMX20_01701 0.44 +1.1 1,796,903 + MPMX20_01701 0.44 -1.3 1,796,911 - MPMX20_01701 0.46 +0.2 1,796,911 - MPMX20_01701 0.46 -1.3 1,796,911 - MPMX20_01701 0.46 -0.5 1,796,979 + MPMX20_01701 0.63 +0.6 1,797,004 + MPMX20_01701 0.69 +0.6 1,797,004 + MPMX20_01701 0.69 -0.7 1,797,004 + MPMX20_01701 0.69 -0.8 1,797,004 + MPMX20_01701 0.69 +0.6 1,797,012 + MPMX20_01701 0.71 -0.2 1,797,012 + MPMX20_01701 0.71 -0.3 1,797,020 + MPMX20_01701 0.73 -0.4 1,797,020 - MPMX20_01701 0.73 -2.1 1,797,028 - MPMX20_01701 0.75 -0.0 1,797,092 + -0.0 1,797,113 + +1.3 1,797,158 + +0.9 1,797,158 + +1.0 1,797,158 + -0.3 1,797,166 - -0.7 1,797,197 + +0.0 1,797,270 + -0.4 1,797,294 + +0.6 1,797,294 + -0.5 1,797,304 - +0.4 1,797,338 + +2.5 1,797,338 + +0.5 1,797,346 - -1.2 1,797,346 - -1.1 1,797,450 + -0.2 1,797,499 - +0.3 1,797,610 + +0.6 1,797,610 + +0.6 1,797,618 - -2.2 1,797,618 - +0.4 1,797,631 + MPMX20_01702 0.10 +0.3 1,797,639 + MPMX20_01702 0.10 +0.1 1,797,670 - MPMX20_01702 0.11 +0.4 1,797,678 + MPMX20_01702 0.11 -0.2 1,797,707 - MPMX20_01702 0.12 -2.7 1,797,727 - MPMX20_01702 0.13 -1.8
Or see this region's nucleotide sequence