Strain Fitness in Pantoea sp. MT58 around IAI47_18260

Experiment: Ying_sugar7 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep A; time point 1
3,885,115	+		IAI47_18250	0.88	-0.7
3,885,115	+		IAI47_18250	0.88	-0.8
3,885,115	+		IAI47_18250	0.88	-0.4
3,885,116	-		IAI47_18250	0.88	-0.9
3,885,116	-		IAI47_18250	0.88	-0.5
3,885,116	-		IAI47_18250	0.88	-0.5
3,885,116	-		IAI47_18250	0.88	-1.6
3,885,173	+				+0.3
3,885,173	+				-1.4
3,885,174	-				-0.1
3,885,174	-				+1.5
3,885,174	-				-1.5
3,885,267	+		IAI47_18255	0.12	+0.6
3,885,267	+		IAI47_18255	0.12	-0.4
3,885,267	+		IAI47_18255	0.12	+0.3
3,885,267	+		IAI47_18255	0.12	+0.3
3,885,267	+		IAI47_18255	0.12	+0.9
3,885,267	+		IAI47_18255	0.12	+1.2
3,885,267	+		IAI47_18255	0.12	+0.9
3,885,267	+		IAI47_18255	0.12	-0.7
3,885,267	+		IAI47_18255	0.12	+1.4
3,885,268	-		IAI47_18255	0.12	-0.3
3,885,268	-		IAI47_18255	0.12	-0.8
3,885,268	-		IAI47_18255	0.12	+0.7
3,885,268	-		IAI47_18255	0.12	+0.6
3,885,268	-		IAI47_18255	0.12	+0.7
3,885,268	-		IAI47_18255	0.12	-0.7
3,885,268	-		IAI47_18255	0.12	+1.8
3,885,268	-		IAI47_18255	0.12	+0.9
3,885,335	+		IAI47_18255	0.21	+0.6
3,885,336	-		IAI47_18255	0.21	-0.7
3,885,336	-		IAI47_18255	0.21	+0.4
3,885,336	-		IAI47_18255	0.21	-0.1
3,885,445	+		IAI47_18255	0.35	+1.7
3,885,489	+		IAI47_18255	0.40	-0.7
3,885,629	+		IAI47_18255	0.58	+0.7
3,885,629	+		IAI47_18255	0.58	+0.5
3,885,629	+		IAI47_18255	0.58	-0.0
3,885,630	-		IAI47_18255	0.58	+0.3
3,885,630	-		IAI47_18255	0.58	+0.3
3,885,630	-		IAI47_18255	0.58	+1.4
3,885,844	-		IAI47_18255	0.86	-1.5
3,885,844	-		IAI47_18255	0.86	-0.9
3,885,852	+		IAI47_18255	0.87	-0.5
3,885,852	+		IAI47_18255	0.87	+0.7
3,885,855	+		IAI47_18255	0.87	-0.3
3,885,855	+		IAI47_18255	0.87	-0.8
3,885,855	+		IAI47_18255	0.87	+1.4
3,885,855	+		IAI47_18255	0.87	-0.3
3,885,855	+		IAI47_18255	0.87	-1.2
3,885,855	+		IAI47_18255	0.87	-0.2
3,885,855	+		IAI47_18255	0.87	+1.3
3,885,855	+		IAI47_18255	0.87	+0.6
3,885,855	+		IAI47_18255	0.87	-1.9
3,885,855	+		IAI47_18255	0.87	-0.1
3,885,855	+		IAI47_18255	0.87	-0.1
3,885,855	+		IAI47_18255	0.87	-1.2
3,885,855	+		IAI47_18255	0.87	+0.9
3,885,855	+		IAI47_18255	0.87	+1.9
3,885,856	-		IAI47_18255	0.87	+0.1
3,885,856	-		IAI47_18255	0.87	+1.2
3,885,856	-		IAI47_18255	0.87	+0.2
3,885,856	-		IAI47_18255	0.87	-0.3
3,885,856	-		IAI47_18255	0.87	+0.3
3,885,856	-		IAI47_18255	0.87	+2.4
3,885,856	-		IAI47_18255	0.87	+1.8
3,885,856	-		IAI47_18255	0.87	-0.1
3,885,892	-				+0.8
3,885,938	-				+0.7
3,885,955	-				-0.3
3,885,971	+				-0.7
3,885,971	+				-0.9
3,885,971	+				+0.2
3,885,971	+				-0.5
3,885,971	+				+0.6
3,885,974	-				-0.9
3,886,093	+				+0.3
3,886,094	-				-0.1
3,886,101	+				-0.6
3,886,101	+				-0.3
3,886,101	+				-1.1
3,886,101	+				+0.7
3,886,101	+				-0.4
3,886,102	-				+1.3
3,886,102	-				+0.1
3,886,102	-				-0.6
3,886,102	-				+1.4
3,886,102	-				-2.2
3,886,102	-				+0.8
3,886,102	-				-1.4
3,886,102	-				+1.1
3,886,102	-				+0.9
3,886,102	-				-0.4
3,886,102	-				+0.2
3,886,104	+				-0.9
3,886,119	-				+0.2
3,887,202	-		IAI47_18265	0.56	+1.5
3,887,251	-		IAI47_18265	0.63	+1.9
3,887,413	+		IAI47_18265	0.86	+1.5
3,887,453	-				+1.4
3,887,477	-				+0.9
3,887,514	-				+2.5
3,887,623	-		IAI47_18270	0.44	+0.5
3,887,623	-		IAI47_18270	0.44	+0.6
3,887,623	-		IAI47_18270	0.44	+2.2
3,887,672	-		IAI47_18270	0.63	+0.9
3,887,672	-		IAI47_18270	0.63	+1.2
3,887,672	-		IAI47_18270	0.63	+1.1
3,887,689	-		IAI47_18270	0.69	-0.1
3,887,689	-		IAI47_18270	0.69	+0.3
3,887,689	-		IAI47_18270	0.69	+0.9
3,887,693	-		IAI47_18270	0.71	-0.9
3,887,693	-		IAI47_18270	0.71	+0.6
3,887,704	-		IAI47_18270	0.75	+1.2
3,887,717	-		IAI47_18270	0.80	+0.7
3,887,717	-		IAI47_18270	0.80	+1.3
3,887,717	-		IAI47_18270	0.80	-0.1
3,887,717	-		IAI47_18270	0.80	+2.3
3,887,738	-		IAI47_18270	0.89	+1.4
3,887,738	-		IAI47_18270	0.89	+0.3
3,887,752	-				+0.4
3,887,752	-				+1.1
3,887,752	-				+0.3
3,887,752	-				+1.3
3,887,752	-				+0.9
3,887,771	+				+1.5
3,887,771	+				+0.3
3,887,772	-				+0.1
3,887,778	+				+1.7
3,887,779	-				+0.4
3,887,779	-				-0.7
3,887,779	-				-1.7
3,887,779	-				+2.4
3,887,781	+				+0.3
3,887,782	-				+0.3
3,887,782	-				-0.7
3,887,782	-				-1.0
3,887,802	+				-1.1
3,887,802	+				+0.9
3,887,802	+				+0.3
3,887,802	+				+0.6
3,887,802	+				+0.3
3,887,802	+				+1.7
3,887,802	+				+1.5
3,887,802	+				-0.1
3,887,803	-				-0.7
3,887,803	-				-3.1
3,887,803	-				+1.2
3,887,803	-				+0.4
3,887,803	-				+0.2
3,887,803	-				+0.6
3,887,803	-				+0.1
3,887,803	-				+0.5
3,887,803	-				+1.7