Strain Fitness in Pantoea sp. MT58 around IAI47_16845

Experiment: Ying_sugar7 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep A; time point 1
3,565,906	+				+0.4
3,565,906	+				-0.0
3,565,906	+				+1.7
3,565,906	+				+0.6
3,565,907	-				-3.0
3,565,907	-				+0.3
3,565,907	-				+0.5
3,565,907	-				+0.8
3,565,968	-				-0.5
3,565,968	-				+1.0
3,565,974	-				-0.5
3,566,043	+				+2.0
3,566,102	+		IAI47_16840	0.16	+1.4
3,566,103	-		IAI47_16840	0.16	-1.6
3,566,129	+		IAI47_16840	0.19	-2.6
3,566,130	-		IAI47_16840	0.19	-0.8
3,566,130	-		IAI47_16840	0.19	-1.3
3,566,130	-		IAI47_16840	0.19	+0.1
3,566,130	-		IAI47_16840	0.19	+0.2
3,566,130	-		IAI47_16840	0.19	+0.7
3,566,171	-		IAI47_16840	0.23	+0.6
3,566,181	+		IAI47_16840	0.25	-0.2
3,566,182	-		IAI47_16840	0.25	+1.5
3,566,265	+		IAI47_16840	0.34	+1.3
3,566,265	+		IAI47_16840	0.34	-0.1
3,566,266	-		IAI47_16840	0.34	-1.0
3,566,326	+		IAI47_16840	0.40	-0.0
3,566,326	+		IAI47_16840	0.40	+0.4
3,566,326	+		IAI47_16840	0.40	-0.0
3,566,326	+		IAI47_16840	0.40	-1.2
3,566,326	+		IAI47_16840	0.40	-1.4
3,566,327	-		IAI47_16840	0.40	+0.3
3,566,327	-		IAI47_16840	0.40	+0.0
3,566,327	-		IAI47_16840	0.40	-0.4
3,566,327	-		IAI47_16840	0.40	-0.0
3,566,327	-		IAI47_16840	0.40	-0.8
3,566,328	+		IAI47_16840	0.40	+0.1
3,566,328	+		IAI47_16840	0.40	+0.8
3,566,328	+		IAI47_16840	0.40	+0.0
3,566,329	-		IAI47_16840	0.41	+1.7
3,566,407	+		IAI47_16840	0.49	-1.6
3,566,407	+		IAI47_16840	0.49	-0.6
3,566,407	+		IAI47_16840	0.49	-0.6
3,566,450	+		IAI47_16840	0.54	-0.2
3,566,450	+		IAI47_16840	0.54	+0.4
3,566,451	-		IAI47_16840	0.54	+1.0
3,566,451	-		IAI47_16840	0.54	+1.3
3,566,451	-		IAI47_16840	0.54	-0.4
3,566,569	-		IAI47_16840	0.67	-0.2
3,566,574	+		IAI47_16840	0.67	+0.3
3,566,574	+		IAI47_16840	0.67	+0.6
3,566,574	+		IAI47_16840	0.67	-1.2
3,566,574	+		IAI47_16840	0.67	-1.4
3,566,574	+		IAI47_16840	0.67	-1.9
3,566,653	+		IAI47_16840	0.76	-0.9
3,566,718	+		IAI47_16840	0.83	-0.8
3,566,719	-		IAI47_16840	0.83	+0.6
3,566,841	+				-1.3
3,566,842	-				+0.1
3,566,853	+				-0.9
3,566,853	+				-0.2
3,566,854	-				+0.7
3,566,854	-				+1.6
3,566,854	-				+0.5
3,566,854	-				-0.5
3,566,854	-				-0.0
3,566,854	-				-0.0
3,566,854	-				-0.0
3,566,875	+				+0.3
3,566,876	-				+1.0
3,566,876	-				-0.1
3,566,876	-				-1.8
3,566,903	+				-1.6
3,566,903	+				+1.4
3,566,903	+				-0.4
3,566,904	-				+0.4
3,566,904	-				-2.0
3,566,904	-				+0.4
3,566,904	-				-0.0
3,566,904	-				+0.5
3,566,904	-				+0.2
3,566,907	+				+1.1
3,566,907	+				-0.1
3,566,908	-				-1.6
3,566,908	-				+0.1
3,566,908	-				+0.8
3,566,982	+				+0.1
3,566,995	+		IAI47_16845	0.10	+0.6
3,566,995	+		IAI47_16845	0.10	+0.7
3,566,995	+		IAI47_16845	0.10	-2.4
3,566,996	-		IAI47_16845	0.11	-0.0
3,566,996	-		IAI47_16845	0.11	+0.5
3,567,067	-		IAI47_16845	0.18	+0.6
3,567,067	-		IAI47_16845	0.18	-0.0
3,567,109	-		IAI47_16845	0.22	-0.3
3,567,109	-		IAI47_16845	0.22	+0.1
3,567,109	-		IAI47_16845	0.22	+0.6
3,567,118	+		IAI47_16845	0.23	-0.3
3,567,118	+		IAI47_16845	0.23	-2.1
3,567,118	+		IAI47_16845	0.23	-0.2
3,567,119	-		IAI47_16845	0.23	-0.2
3,567,119	-		IAI47_16845	0.23	+1.1
3,567,151	-		IAI47_16845	0.26	-0.4
3,567,168	+		IAI47_16845	0.28	-0.0
3,567,193	+		IAI47_16845	0.30	+1.2
3,567,193	+		IAI47_16845	0.30	-0.6
3,567,193	+		IAI47_16845	0.30	+1.0
3,567,193	+		IAI47_16845	0.30	+0.5
3,567,194	-		IAI47_16845	0.30	+0.1
3,567,194	-		IAI47_16845	0.30	+1.2
3,567,194	-		IAI47_16845	0.30	-0.5
3,567,194	-		IAI47_16845	0.30	-0.9
3,567,194	-		IAI47_16845	0.30	+0.7
3,567,194	-		IAI47_16845	0.30	-0.9
3,567,194	-		IAI47_16845	0.30	-0.6
3,567,201	+		IAI47_16845	0.31	+1.3
3,567,208	+		IAI47_16845	0.32	+0.5
3,567,373	+		IAI47_16845	0.48	-0.5
3,567,373	+		IAI47_16845	0.48	+2.4
3,567,373	+		IAI47_16845	0.48	+0.5
3,567,397	-		IAI47_16845	0.50	-0.5
3,567,397	-		IAI47_16845	0.50	+0.1
3,567,453	-		IAI47_16845	0.56	-0.0
3,567,533	+		IAI47_16845	0.64	-1.1
3,567,533	+		IAI47_16845	0.64	-0.2
3,567,534	-		IAI47_16845	0.64	+0.1
3,567,580	+		IAI47_16845	0.69	-0.0
3,567,652	+		IAI47_16845	0.76	+0.1
3,567,653	-		IAI47_16845	0.76	+1.7
3,567,653	-		IAI47_16845	0.76	-0.0
3,567,705	+		IAI47_16845	0.81	+2.0
3,567,706	-		IAI47_16845	0.81	-0.4
3,567,706	-		IAI47_16845	0.81	-0.6
3,567,849	+				+0.1
3,567,849	+				-1.3
3,567,849	+				+0.4
3,567,849	+				-0.2
3,567,849	+				+0.4
3,567,892	+				-1.2
3,567,892	+				-1.0
3,567,892	+				-1.3
3,567,892	+				-1.4
3,567,892	+				+1.0
3,567,893	-				+1.0
3,567,893	-				-0.5
3,567,893	-				-1.2
3,567,893	-				-0.2
3,567,913	+				-0.0
3,567,949	+				+0.7
3,567,949	+				-0.6
3,567,950	-				+1.4
3,567,950	-				-0.9
3,567,963	+				-0.5
3,567,963	+				-0.2
3,567,964	-				-0.5
3,567,964	-				-0.4
3,567,964	-				+0.3
3,567,964	-				+0.8
3,567,985	+				+0.1
3,567,985	+				-1.7
3,567,985	+				-0.6
3,567,986	-				-0.2
3,567,988	-				-0.0
3,567,988	-				-0.3
3,568,035	+				-1.0
3,568,036	-				+0.3
3,568,036	-				-0.9
3,568,080	+				-1.2
3,568,081	-				+0.2
3,568,145	+		IAI47_16850	0.13	-1.6
3,568,146	-		IAI47_16850	0.13	+0.8
3,568,146	-		IAI47_16850	0.13	-1.9
3,568,146	-		IAI47_16850	0.13	+0.1
3,568,146	-		IAI47_16850	0.13	+0.5
3,568,146	-		IAI47_16850	0.13	-0.5
3,568,146	-		IAI47_16850	0.13	+0.2
3,568,146	-		IAI47_16850	0.13	-0.9
3,568,146	-		IAI47_16850	0.13	-0.6
3,568,148	+		IAI47_16850	0.14	-0.3
3,568,149	-		IAI47_16850	0.14	-0.3
3,568,149	-		IAI47_16850	0.14	+0.1
3,568,149	-		IAI47_16850	0.14	+0.3
3,568,149	-		IAI47_16850	0.14	-0.4
3,568,171	+		IAI47_16850	0.15	-0.5
3,568,172	-		IAI47_16850	0.15	-0.3
3,568,172	-		IAI47_16850	0.15	-1.6
3,568,214	+		IAI47_16850	0.18	-0.0
3,568,215	-		IAI47_16850	0.18	-0.9
3,568,215	-		IAI47_16850	0.18	-1.4
3,568,218	+		IAI47_16850	0.18	+0.4
3,568,218	+		IAI47_16850	0.18	-0.1
3,568,219	-		IAI47_16850	0.19	-0.6
3,568,219	-		IAI47_16850	0.19	-0.0
3,568,219	-		IAI47_16850	0.19	+0.8
3,568,331	+		IAI47_16850	0.27	+0.1
3,568,366	+		IAI47_16850	0.29	+0.4
3,568,366	+		IAI47_16850	0.29	+2.0
3,568,366	+		IAI47_16850	0.29	+0.4
3,568,366	+		IAI47_16850	0.29	+0.5
3,568,366	+		IAI47_16850	0.29	+2.0
3,568,366	+		IAI47_16850	0.29	+0.4
3,568,366	+		IAI47_16850	0.29	+2.5
3,568,367	-		IAI47_16850	0.29	-0.7
3,568,367	-		IAI47_16850	0.29	+0.8
3,568,367	-		IAI47_16850	0.29	+0.1
3,568,367	-		IAI47_16850	0.29	+0.3
3,568,388	+		IAI47_16850	0.31	-0.6
3,568,389	-				-2.3
3,568,396	+		IAI47_16850	0.31	+0.2
3,568,396	+		IAI47_16850	0.31	-0.3
3,568,396	+		IAI47_16850	0.31	-0.7
3,568,396	+		IAI47_16850	0.31	+0.8
3,568,397	-		IAI47_16850	0.31	-1.1
3,568,406	+		IAI47_16850	0.32	-0.5
3,568,407	-		IAI47_16850	0.32	+0.5
3,568,423	-		IAI47_16850	0.33	+2.4
3,568,457	+		IAI47_16850	0.35	-0.6
3,568,457	+		IAI47_16850	0.35	-0.7
3,568,458	-		IAI47_16850	0.36	-1.5
3,568,458	-		IAI47_16850	0.36	+0.5
3,568,458	-		IAI47_16850	0.36	+0.2
3,568,458	-		IAI47_16850	0.36	+1.0
3,568,458	-		IAI47_16850	0.36	-1.5
3,568,458	-		IAI47_16850	0.36	-0.0
3,568,458	-		IAI47_16850	0.36	+0.1
3,568,458	-		IAI47_16850	0.36	+1.0
3,568,458	-		IAI47_16850	0.36	+1.0
3,568,460	+		IAI47_16850	0.36	+0.6
3,568,460	+		IAI47_16850	0.36	-0.0
3,568,460	+		IAI47_16850	0.36	-0.0
3,568,460	+		IAI47_16850	0.36	-0.4
3,568,461	-		IAI47_16850	0.36	+2.0
3,568,461	-		IAI47_16850	0.36	+1.4
3,568,461	-		IAI47_16850	0.36	-1.1
3,568,461	-		IAI47_16850	0.36	-0.2
3,568,461	-		IAI47_16850	0.36	+0.6
3,568,461	-		IAI47_16850	0.36	+2.0
3,568,461	-		IAI47_16850	0.36	-0.6
3,568,461	-		IAI47_16850	0.36	-1.0
3,568,513	-		IAI47_16850	0.39	-0.0
3,568,517	+		IAI47_16850	0.40	-0.2
3,568,517	+		IAI47_16850	0.40	+0.8
3,568,518	-		IAI47_16850	0.40	+0.3
3,568,518	-		IAI47_16850	0.40	+0.8
3,568,518	-		IAI47_16850	0.40	-0.5
3,568,518	-		IAI47_16850	0.40	-0.4
3,568,518	-		IAI47_16850	0.40	-1.9
3,568,520	+		IAI47_16850	0.40	+0.1
3,568,521	-		IAI47_16850	0.40	+0.7
3,568,521	-		IAI47_16850	0.40	+0.4
3,568,548	+		IAI47_16850	0.42	-0.5
3,568,548	+		IAI47_16850	0.42	-0.2
3,568,548	+		IAI47_16850	0.42	+0.2
3,568,548	+		IAI47_16850	0.42	+0.7
3,568,548	+		IAI47_16850	0.42	+0.5
3,568,701	+		IAI47_16850	0.53	-0.2
3,568,701	+		IAI47_16850	0.53	+0.5
3,568,702	-		IAI47_16850	0.53	+0.4
3,568,743	+		IAI47_16850	0.56	-1.0
3,568,743	+		IAI47_16850	0.56	+0.7
3,568,743	+		IAI47_16850	0.56	-0.7
3,568,744	-		IAI47_16850	0.56	-0.2
3,568,744	-		IAI47_16850	0.56	-0.8
3,568,744	-		IAI47_16850	0.56	+0.4
3,568,770	-		IAI47_16850	0.58	-0.5
3,568,770	-		IAI47_16850	0.58	-1.7
3,568,789	+		IAI47_16850	0.59	+0.4
3,568,790	-		IAI47_16850	0.59	+1.2
3,568,854	+		IAI47_16850	0.64	-1.5
3,568,854	+		IAI47_16850	0.64	+1.1
3,568,854	+		IAI47_16850	0.64	-0.4
3,568,854	+		IAI47_16850	0.64	+0.7
3,568,855	-		IAI47_16850	0.64	-0.9